mRNA_M-pyrifera_M_contig78595.18466.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78595.18466.1
Unique NamemRNA_M-pyrifera_M_contig78595.18466.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78595.18466.1 vs. uniprot
Match: A0A2E9XVB1_9RICK (30S ribosomal protein S13 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E9XVB1_9RICK)

HSP 1 Score: 174 bits (441), Expect = 2.040e-54
Identity = 83/107 (77.57%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:    1 MSKLVILDTTISLEKEFKSALNSIFGFSYIKLRHLNKLFGTNVRSLYKIKDLTLNERNLISYYLPDLSIFGSDLKKKISDEQDKYFSLKCYRRNRILLGLPAHGQRT 321
            MS LVILDTTI LEKEFK AL SIFGFSYIKLRHLNK+FG+NV S+YK++DLT ++RN +S+YLP+L++FGSDLKKKIS EQ+K+F+LKCYRRNR+LLGLPAHGQRT
Sbjct:    1 MSNLVILDTTILLEKEFKLALKSIFGFSYIKLRHLNKIFGSNVNSIYKVQDLTASDRNSMSFYLPELALFGSDLKKKISVEQEKFFTLKCYRRNRLLLGLPAHGQRT 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78595.18466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E9XVB1_9RICK2.040e-5477.5730S ribosomal protein S13 n=1 Tax=Rickettsiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78595contigM-pyrifera_M_contig78595:665..985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.3055203-CDS-M-pyrifera_M_contig78595:664..9851622816688.3055203-CDS-M-pyrifera_M_contig78595:664..985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78595 665..985 +
1692278120.5398858-CDS-M-pyrifera_M_contig78595:664..9851692278120.5398858-CDS-M-pyrifera_M_contig78595:664..985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78595 665..985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78595.18466.1prot_M-pyrifera_M_contig78595.18466.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78595 665..985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78595.18466.1

>prot_M-pyrifera_M_contig78595.18466.1 ID=prot_M-pyrifera_M_contig78595.18466.1|Name=mRNA_M-pyrifera_M_contig78595.18466.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MSKLVILDTTISLEKEFKSALNSIFGFSYIKLRHLNKLFGTNVRSLYKIK
DLTLNERNLISYYLPDLSIFGSDLKKKISDEQDKYFSLKCYRRNRILLGL
PAHGQRT
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mRNA from alignment at M-pyrifera_M_contig78595:665..985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78595.18466.1 ID=mRNA_M-pyrifera_M_contig78595.18466.1|Name=mRNA_M-pyrifera_M_contig78595.18466.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig78595:665..985+ (Macrocystis pyrifera P11B4 male)
ATGTCAAAGTTAGTTATATTAGATACTACTATATCATTGGAAAAAGAATT
TAAATCAGCATTAAATTCTATTTTTGGTTTTAGTTATATAAAATTAAGAC
ATTTAAATAAACTTTTTGGAACAAATGTAAGAAGTTTATATAAAATTAAA
GATTTAACACTAAATGAACGTAATTTAATTTCTTATTATTTACCTGATTT
ATCGATTTTTGGTTCAGATTTAAAAAAAAAAATATCTGATGAACAAGATA
AATATTTTTCATTAAAATGTTATAGACGTAATAGAATTTTATTAGGTTTA
CCAGCGCACGGCCAACGAACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78595:665..985+

>mRNA_M-pyrifera_M_contig78595.18466.1 ID=mRNA_M-pyrifera_M_contig78595.18466.1|Name=mRNA_M-pyrifera_M_contig78595.18466.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig78595:665..985+ (Macrocystis pyrifera P11B4 male)
ATGTCAAAGTTAGTTATATTAGATACTACTATATCATTGGAAAAAGAATT
TAAATCAGCATTAAATTCTATTTTTGGTTTTAGTTATATAAAATTAAGAC
ATTTAAATAAACTTTTTGGAACAAATGTAAGAAGTTTATATAAAATTAAA
GATTTAACACTAAATGAACGTAATTTAATTTCTTATTATTTACCTGATTT
ATCGATTTTTGGTTCAGATTTAAAAAAAAAAATATCTGATGAACAAGATA
AATATTTTTCATTAAAATGTTATAGACGTAATAGAATTTTATTAGGTTTA
CCAGCGCACGGCCAACGAACAATGTCAAAGTTAGTTATATTAGATACTAC
TATATCATTGGAAAAAGAATTTAAATCAGCATTAAATTCTATTTTTGGTT
TTAGTTATATAAAATTAAGACATTTAAATAAACTTTTTGGAACAAATGTA
AGAAGTTTATATAAAATTAAAGATTTAACACTAAATGAACGTAATTTAAT
TTCTTATTATTTACCTGATTTATCGATTTTTGGTTCAGATTTAAAAAAAA
AAATATCTGATGAACAAGATAAATATTTTTCATTAAAATGTTATAGACGT
AATAGAATTTTATTAGGTTTACCAGCGCACGGCCAACGAACA
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