mRNA_M-pyrifera_M_contig78595.18465.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78595.18465.1
Unique NamemRNA_M-pyrifera_M_contig78595.18465.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A2E9XVF3_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E9XVF3_9RICK)

HSP 1 Score: 221 bits (563), Expect = 3.730e-71
Identity = 109/162 (67.28%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 FLSKTKFKLKLNQFF-------VYKDNFVLIHKNYIRTFFSLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKSRLGSGFGYYG 465
            +L  +KFKLK N+ F             +L+HK YIR FF+L W +L+G SHGYKT LYVKGKGLRLQLKTRK  L IYLKLGYSHKIFL LP+ CWAK+FGRRR+++LY+LNYI+LRNLVLKIRSFYP+GLYK RGFY+E+++I+I+EGKSRL +GFGYYG
Sbjct:   31 YLINSKFKLKSNKVFSLNPLDSATNTTIILVHKRYIRVFFTLVWMHLEGSSHGYKTILYVKGKGLRLQLKTRKGHLCIYLKLGYSHKIFLHLPEFCWAKLFGRRRTMKLYALNYIVLRNLVLKIRSFYPLGLYKVRGFYVENDDIRIIEGKSRL-TGFGYYG 191          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A7X8EIA5_9BACT (50S ribosomal protein L6 n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X8EIA5_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 6.060e-9
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  100 SLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRS---IRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKSRLGS 447
            SL  + + GVS GY  TL + G G R +     N  ++ L LGYSH IF++LPK    +    RRS   I L S++  L+ ++  KIRS      YK +G   E+E ++   GKS + S
Sbjct:   71 SLVKNMVVGVSEGYNITLELVGVGFRAEA----NGQMLELNLGYSHSIFIELPKEISVEAKSDRRSNPKITLSSIDKQLIGHVAAKIRSLRKPEPYKGKGIRYENEIVRRKAGKSAVKS 185          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: I4ALV2_BERLS (50S ribosomal protein L6 n=2 Tax=Cytophagales TaxID=768507 RepID=I4ALV2_BERLS)

HSP 1 Score: 60.8 bits (146), Expect = 1.570e-8
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  100 SLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAK---IFGRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKS 435
            SL  + ++GVS+GYKT L + G G + + K +    ++ L LGYSH IFL +PK        + G+   + L S +  LL ++  KIRS   V  YK +G     E ++   GKS
Sbjct:   70 SLVQNMVEGVSNGYKTHLELVGVGYKAEAKGQ----ILELNLGYSHAIFLQVPKEIAVSAEMLKGQNPKVTLESSDKELLGHITAKIRSLRKVEPYKGKGVRFVGEQVRRKAGKS 180          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A7T5BN29_9STRA (Ribosomal protein L6 n=1 Tax=Odontella regia TaxID=1335017 RepID=A0A7T5BN29_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.740e-8
Identity = 46/149 (30.87%), Postives = 67/149 (44.97%), Query Frame = 1
Query:    7 SKTKFKLKLNQFFVYKDNFVLIHKN-------YIRTFFSLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGK 432
            +K  F +  N   +   NF L  KN       Y+    S+    +  VS+     L   G G ++ + +  NK+++ LK+G+SH +FL LP N     F     I L+  NY  L  +   IR       YK +G   E ENIK+ EGK
Sbjct:   40 NKLNFSISSNYIKITPYNFYLPSKNVKKKTKSYLGLICSIIKQSVLEVSNILCKKLKFVGVGFKVFIHSIFNKIILQLKIGFSHTVFLKLPNNIKVHCFKSNSKIYLFGTNYRKLLQITSFIRKLKIPEPYKGKGILYELENIKLKEGK 188          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A1F3M3X5_9BACT (50S ribosomal protein L6 n=5 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A1F3M3X5_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 8.480e-7
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = 1
Query:    7 SKTKFKLKLNQFFVYKDNFVLIHKNYIRTFFSLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIF---GRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKS 435
            S    K+K  Q  +++ +  L HK     + SL  + + GVS GYK    + G G + + K +    ++ L LG+SH IF++LPK    +     G+   I+L S++  LL  +  KIRS      YK +G   + E ++   GK+
Sbjct:   40 SAITLKVKDGQIELHRISEELDHKAKHGLYRSLIHNMVIGVSEGYKLVQELVGVGYKAEAKGQ----ILELSLGFSHHIFMELPKEVKVETLAERGKLPQIKLSSIDKQLLGQVAAKIRSLRKPEPYKGKGIKFQGEVLRKKAGKA 181          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A1V6H567_9BACT (50S ribosomal protein L6 n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V6H567_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.160e-6
Identity = 42/115 (36.52%), Postives = 57/115 (49.57%), Query Frame = 1
Query:  100 SLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRS---IRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKS 435
            SL  + + GVS GYK  L + G G R    T  N  ++ L LGY+H I+L+LPK    +    R     I L S +  LL  +  KIRSF     YK +G   + E I+   GK+
Sbjct:   71 SLINNMVVGVSEGYKKVLELVGVGFR----TSNNGQILELILGYTHNIYLELPKEVSVETKSERNQNPLILLESCDKQLLGQICAKIRSFRKPEPYKGKGVKFQGEVIRRKAGKT 181          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A0G2RKW1_TUROR (Ribosomal protein L6 n=1 Tax=Turbinaria ornata TaxID=86657 RepID=A0A0G2RKW1_TUROR)

HSP 1 Score: 54.7 bits (130), Expect = 2.290e-6
Identity = 38/130 (29.23%), Postives = 63/130 (48.46%), Query Frame = 1
Query:   46 VYKDNFVLIHKNYIRTF-FSLFWSYLDGVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGK 432
            +Y+   ++I   Y+ ++  S+F   + GV  GY   L +KG G ++     K    +   LG+SH IF+D+PK    +    +++  L S N+ LL+N    IR +     YK  G    +E +   EGK
Sbjct:   38 IYRKGNMIIFLPYLTSYDSSIFTQAVLGVVLGYSVELILKGIGYKVYKSDEK----LIFSLGFSHSIFIDIPKGVLVRF--NKKTFSLVSANFGLLQNFATSIRRYRFPDSYKGAGVVYANEIVICKEGK 161          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A2E8MX61_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8MX61_9RICK)

HSP 1 Score: 54.7 bits (130), Expect = 3.820e-6
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  151 LYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDEN-IKIVE 426
            L ++G GL++   T K+   + LKLG+SH I+L +PK     IF ++  I  Y  N I + N   K+++  P+ LY  +GF+L+ +N I++ E
Sbjct:  110 LIIRGAGLKV---TFKDNNCLQLKLGFSHLIYLSIPKTIVVSIFKKKVIIEGY--NQIEVYNYSHKLKNLKPLNLYTGKGFFLKSDNKIELKE 197          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A0A2DUF3_9PORP (50S ribosomal protein L6 n=1 Tax=Porphyromonas sp. COT-239 OH1446 TaxID=1515613 RepID=A0A0A2DUF3_9PORP)

HSP 1 Score: 53.9 bits (128), Expect = 5.890e-6
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1
Query:  124 GVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRS---IRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKS 435
            GVS G+K TL + G G R   + +    ++ L LG++H +FL LPK    +    R     I L S +  LL  +  KIRSF     YK +G   E E I+   GKS
Sbjct:   78 GVSEGFKKTLELVGVGYRASNQGQ----ILELSLGFTHNVFLQLPKEISVETKSERNKNPLIILESADKQLLGQVCTKIRSFRKPEPYKGKGIKFEGEVIRRKSGKS 180          
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Match: A0A7X7LGW2_9BACT (50S ribosomal protein L6 n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7LGW2_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 5.970e-6
Identity = 39/107 (36.45%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  124 GVSHGYKTTLYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIF---GRRRSIRLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKS 435
            GVS GYK    + G G     K   N  ++ L +GYSH IFL+LPK          G+   I L S++  L+  +  KIRSF     YK +G   E E ++   GKS
Sbjct:   79 GVSTGYKIVQELVGVGY----KAANNGQILELAVGYSHSIFLELPKEIKVTTVTERGKNPIITLESIDKQLIGQVAAKIRSFRKPEPYKGKGIKFEGEVLRRKAGKS 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78595.18465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E9XVF3_9RICK3.730e-7167.28Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A7X8EIA5_9BACT6.060e-936.9750S ribosomal protein L6 n=1 Tax=Bacteroidales bac... [more]
I4ALV2_BERLS1.570e-835.6550S ribosomal protein L6 n=2 Tax=Cytophagales TaxI... [more]
A0A7T5BN29_9STRA1.740e-830.87Ribosomal protein L6 n=1 Tax=Odontella regia TaxID... [more]
A0A1F3M3X5_9BACT8.480e-730.1450S ribosomal protein L6 n=5 Tax=unclassified Bact... [more]
A0A1V6H567_9BACT1.160e-636.5250S ribosomal protein L6 n=2 Tax=Bacteroidetes Tax... [more]
A0A0G2RKW1_TUROR2.290e-629.23Ribosomal protein L6 n=1 Tax=Turbinaria ornata Tax... [more]
A0A2E8MX61_9RICK3.820e-635.48Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A0A2DUF3_9PORP5.890e-636.4550S ribosomal protein L6 n=1 Tax=Porphyromonas sp.... [more]
A0A7X7LGW2_9BACT5.970e-636.4550S ribosomal protein L6 n=1 Tax=Bacteroidales bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78595contigM-pyrifera_M_contig78595:33..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog880071.Fleli_2573
Preferred namerplF
KEGG koko:K02933
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070180,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
EggNOG OGs47PER@768503,4NGJM@976,COG0097@1,COG0097@2
COG Functional cat.J
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size468
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.3548481-CDS-M-pyrifera_M_contig78595:32..5001622816688.3548481-CDS-M-pyrifera_M_contig78595:32..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78595 33..500 +
1692278120.560357-CDS-M-pyrifera_M_contig78595:32..5001692278120.560357-CDS-M-pyrifera_M_contig78595:32..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78595 33..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78595.18465.1prot_M-pyrifera_M_contig78595.18465.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78595 33..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78595.18465.1

>prot_M-pyrifera_M_contig78595.18465.1 ID=prot_M-pyrifera_M_contig78595.18465.1|Name=mRNA_M-pyrifera_M_contig78595.18465.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
FLSKTKFKLKLNQFFVYKDNFVLIHKNYIRTFFSLFWSYLDGVSHGYKTT
LYVKGKGLRLQLKTRKNKLLIYLKLGYSHKIFLDLPKNCWAKIFGRRRSI
RLYSLNYILLRNLVLKIRSFYPVGLYKFRGFYLEDENIKIVEGKSRLGSG
FGYYG*
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mRNA from alignment at M-pyrifera_M_contig78595:33..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78595.18465.1 ID=mRNA_M-pyrifera_M_contig78595.18465.1|Name=mRNA_M-pyrifera_M_contig78595.18465.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig78595:33..500+ (Macrocystis pyrifera P11B4 male)
TTTCTTTCTAAAACAAAATTTAAATTAAAATTAAATCAATTTTTTGTTTA TAAAGATAATTTTGTTTTAATACATAAAAATTATATTAGAACTTTTTTTT CATTATTTTGGAGTTATTTAGATGGAGTTTCTCATGGTTATAAAACAACA TTATATGTTAAAGGTAAAGGTTTACGTTTACAATTAAAAACTCGTAAAAA TAAATTATTAATTTATTTAAAGTTAGGTTATAGTCATAAGATTTTTTTAG ATTTACCTAAAAATTGTTGGGCAAAAATTTTTGGACGTCGTAGAAGTATA CGTTTATACTCTTTAAATTATATTTTATTACGTAATTTAGTTTTAAAAAT AAGAAGTTTTTATCCTGTTGGTTTATATAAATTTAGAGGTTTTTATCTTG AAGATGAAAATATAAAAATAGTAGAAGGTAAATCACGTTTAGGATCAGGT TTTGGTTATTATGGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78595:33..500+

>mRNA_M-pyrifera_M_contig78595.18465.1 ID=mRNA_M-pyrifera_M_contig78595.18465.1|Name=mRNA_M-pyrifera_M_contig78595.18465.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig78595:33..500+ (Macrocystis pyrifera P11B4 male)
TTTCTTTCTAAAACAAAATTTAAATTAAAATTAAATCAATTTTTTGTTTA
TAAAGATAATTTTGTTTTAATACATAAAAATTATATTAGAACTTTTTTTT
CATTATTTTGGAGTTATTTAGATGGAGTTTCTCATGGTTATAAAACAACA
TTATATGTTAAAGGTAAAGGTTTACGTTTACAATTAAAAACTCGTAAAAA
TAAATTATTAATTTATTTAAAGTTAGGTTATAGTCATAAGATTTTTTTAG
ATTTACCTAAAAATTGTTGGGCAAAAATTTTTGGACGTCGTAGAAGTATA
CGTTTATACTCTTTAAATTATATTTTATTACGTAATTTAGTTTTAAAAAT
AAGAAGTTTTTATCCTGTTGGTTTATATAAATTTAGAGGTTTTTATCTTG
AAGATGAAAATATAAAAATAGTAGAAGGTAAATCACGTTTAGGATCAGGT
TTTGGTTATTATGGTTAATTTCTTTCTAAAACAAAATTTAAATTAAAATT
AAATCAATTTTTTGTTTATAAAGATAATTTTGTTTTAATACATAAAAATT
ATATTAGAACTTTTTTTTCATTATTTTGGAGTTATTTAGATGGAGTTTCT
CATGGTTATAAAACAACATTATATGTTAAAGGTAAAGGTTTACGTTTACA
ATTAAAAACTCGTAAAAATAAATTATTAATTTATTTAAAGTTAGGTTATA
GTCATAAGATTTTTTTAGATTTACCTAAAAATTGTTGGGCAAAAATTTTT
GGACGTCGTAGAAGTATACGTTTATACTCTTTAAATTATATTTTATTACG
TAATTTAGTTTTAAAAATAAGAAGTTTTTATCCTGTTGGTTTATATAAAT
TTAGAGGTTTTTATCTTGAAGATGAAAATATAAAAATAGTAGAAGGTAAA
TCACGTTTAGGATCAGGTTTTGGTTATTATGGTTAA
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