mRNA_M-pyrifera_M_contig78554.18459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78554.18459.1
Unique NamemRNA_M-pyrifera_M_contig78554.18459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78554.18459.1 vs. uniprot
Match: A0A3D0I8I0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I8I0_9DELT)

HSP 1 Score: 146 bits (369), Expect = 2.180e-40
Identity = 73/151 (48.34%), Postives = 104/151 (68.87%), Query Frame = 1 
Query:    1 MRRWDGLLDRYMAECVTRGLAEATVAGRRRELERFGVWLKRQRPKVVLRDVDVELVTRYIKSRKTFRAKASVVGSMSSLRCMGEFLVREGEWESSPLRWMRGPKIDPRSRLPRRVFKSDLEKLWSAAAELKSEHARYQALCVLAILYGLGL 453
            MRRWD L++ Y+ E   RG+  ATVA     L+R+G WLK++RP+V +  +  EL+TRYI S  TFRAKA+V G++S +R  G++LVR+G W  SPLRWM+GPK+ P SRLP+R+ +  ++ LW  A   + E + +  + VLA+LYG GL
Sbjct:    1 MRRWDRLVEGYIEEYRARGINPATVAHTAATLDRWGRWLKQRRPRVSIERIGAELITRYIASCSTFRAKATVYGNLSMMRGFGDYLVRQGLWSVSPLRWMKGPKLTPYSRLPKRIDREHMQALWREAGSRRGECSAHLWVTVLALLYGTGL 151
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BLAST of mRNA_M-pyrifera_M_contig78554.18459.1 vs. uniprot
Match: A0A1V5ZDX9_9BACT (Tyrosine recombinase XerD n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZDX9_9BACT)

HSP 1 Score: 146 bits (369), Expect = 2.510e-40
Identity = 71/151 (47.02%), Postives = 100/151 (66.23%), Query Frame = 1 
Query:    1 MRRWDGLLDRYMAECVTRGLAEATVAGRRRELERFGVWLKRQRPKVVLRDVDVELVTRYIKSRKTFRAKASVVGSMSSLRCMGEFLVREGEWESSPLRWMRGPKIDPRSRLPRRVFKSDLEKLWSAAAELKSEHARYQALCVLAILYGLGL 453
            MRRWDGL+D Y+ EC TRGL  +T+ G   ELER G WLKR+RP++ L  +D      Y K+R  FRA+ +V  S+  +R  GE+L R+G W ++P+RW++GPK+DPR  LPRR+    +++LW    ++ S+  R    CVLAILYG G+
Sbjct:    1 MRRWDGLVDGYIKECETRGLQGSTIKGMVYELERCGRWLKRRRPRIDLEQIDSVQFVEYFKTRTAFRARCTVYRSVGIVRGFGEYLSRQGVWLNNPVRWIKGPKMDPRMCLPRRIDSGVMKRLWDGVEQMTSDSKRSVLRCVLAILYGTGI 151
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BLAST of mRNA_M-pyrifera_M_contig78554.18459.1 vs. uniprot
Match: A0A7C5HU80_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C5HU80_9CHLR)

HSP 1 Score: 146 bits (368), Expect = 4.070e-40
Identity = 74/151 (49.01%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:    1 MRRWDGLLDRYMAECVTRGLAEATVAGRRRELERFGVWLKRQRPKVVLRDVDVELVTRYIKSRKTFRAKASVVGSMSSLRCMGEFLVREGEWESSPLRWMRGPKIDPRSRLPRRVFKSDLEKLWSAAAELKSEHARYQALCVLAILYGLGL 453
            MRRW+ L+D+Y+    TRGL++  +    REL+R+G WL+R++PK  L DV  E++ +YI SR   RAKA+V G +S LR MG+ LVREG W  +PLRW+RGP++DPR+R+PRR+ K  LE L   AA    ++ RY  + VL +LY  GL
Sbjct:    1 MRRWEVLVDKYLTTFKTRGLSDDYIKNTGRELDRWGAWLRRRKPKPRLEDVSSEMLIKYIGSRTVCRAKATVYGVISKLRGMGDLLVREGVWRQNPLRWIRGPRLDPRARVPRRIKKVHLENLLVTAARSHLKYYRYMWVAVLMLLYSTGL 151
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78554.18459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3D0I8I0_9DELT2.180e-4048.34Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1V5ZDX9_9BACT2.510e-4047.02Tyrosine recombinase XerD n=1 Tax=Candidatus Hydro... [more]
A0A7C5HU80_9CHLR4.070e-4049.01Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78554contigM-pyrifera_M_contig78554:3..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816688.0018058-CDS-M-pyrifera_M_contig78554:2..4551622816688.0018058-CDS-M-pyrifera_M_contig78554:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78554 3..455 -
1692278120.384486-CDS-M-pyrifera_M_contig78554:2..4551692278120.384486-CDS-M-pyrifera_M_contig78554:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78554 3..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78554.18459.1prot_M-pyrifera_M_contig78554.18459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78554 3..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78554.18459.1

>prot_M-pyrifera_M_contig78554.18459.1 ID=prot_M-pyrifera_M_contig78554.18459.1|Name=mRNA_M-pyrifera_M_contig78554.18459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MRRWDGLLDRYMAECVTRGLAEATVAGRRRELERFGVWLKRQRPKVVLRD
VDVELVTRYIKSRKTFRAKASVVGSMSSLRCMGEFLVREGEWESSPLRWM
RGPKIDPRSRLPRRVFKSDLEKLWSAAAELKSEHARYQALCVLAILYGLG
L
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mRNA from alignment at M-pyrifera_M_contig78554:3..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78554.18459.1 ID=mRNA_M-pyrifera_M_contig78554.18459.1|Name=mRNA_M-pyrifera_M_contig78554.18459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig78554:3..455- (Macrocystis pyrifera P11B4 male)
ATGCGGAGATGGGATGGACTATTGGATCGGTACATGGCTGAGTGCGTGAC
GCGGGGGTTGGCGGAAGCGACGGTCGCTGGGCGTCGACGTGAGCTTGAGC
GCTTTGGTGTTTGGCTGAAGCGGCAGCGACCAAAGGTTGTTTTGCGGGAC
GTTGATGTGGAGCTCGTCACTCGCTACATCAAGTCGCGCAAGACGTTTCG
GGCAAAGGCATCCGTGGTCGGATCCATGTCTTCGCTGCGGTGCATGGGTG
AGTTTCTCGTTCGTGAAGGGGAATGGGAGAGCAGTCCCCTTCGTTGGATG
CGTGGCCCGAAGATCGACCCTCGCAGCCGACTTCCGCGTCGCGTGTTCAA
GAGCGACTTAGAAAAACTCTGGAGTGCTGCAGCTGAACTAAAAAGCGAGC
ATGCGCGCTATCAAGCCCTGTGCGTTCTCGCGATTCTCTACGGCTTGGGA
TTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78554:3..455-

>mRNA_M-pyrifera_M_contig78554.18459.1 ID=mRNA_M-pyrifera_M_contig78554.18459.1|Name=mRNA_M-pyrifera_M_contig78554.18459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig78554:3..455- (Macrocystis pyrifera P11B4 male)
ATGCGGAGATGGGATGGACTATTGGATCGGTACATGGCTGAGTGCGTGAC
GCGGGGGTTGGCGGAAGCGACGGTCGCTGGGCGTCGACGTGAGCTTGAGC
GCTTTGGTGTTTGGCTGAAGCGGCAGCGACCAAAGGTTGTTTTGCGGGAC
GTTGATGTGGAGCTCGTCACTCGCTACATCAAGTCGCGCAAGACGTTTCG
GGCAAAGGCATCCGTGGTCGGATCCATGTCTTCGCTGCGGTGCATGGGTG
AGTTTCTCGTTCGTGAAGGGGAATGGGAGAGCAGTCCCCTTCGTTGGATG
CGTGGCCCGAAGATCGACCCTCGCAGCCGACTTCCGCGTCGCGTGTTCAA
GAGCGACTTAGAAAAACTCTGGAGTGCTGCAGCTGAACTAAAAAGCGAGC
ATGCGCGCTATCAAGCCCTGTGCGTTCTCGCGATTCTCTACGGCTTGGGA
TTGATGCGGAGATGGGATGGACTATTGGATCGGTACATGGCTGAGTGCGT
GACGCGGGGGTTGGCGGAAGCGACGGTCGCTGGGCGTCGACGTGAGCTTG
AGCGCTTTGGTGTTTGGCTGAAGCGGCAGCGACCAAAGGTTGTTTTGCGG
GACGTTGATGTGGAGCTCGTCACTCGCTACATCAAGTCGCGCAAGACGTT
TCGGGCAAAGGCATCCGTGGTCGGATCCATGTCTTCGCTGCGGTGCATGG
GTGAGTTTCTCGTTCGTGAAGGGGAATGGGAGAGCAGTCCCCTTCGTTGG
ATGCGTGGCCCGAAGATCGACCCTCGCAGCCGACTTCCGCGTCGCGTGTT
CAAGAGCGACTTAGAAAAACTCTGGAGTGCTGCAGCTGAACTAAAAAGCG
AGCATGCGCGCTATCAAGCCCTGTGCGTTCTCGCGATTCTCTACGGCTTG
GGATTG
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