mRNA_M-pyrifera_M_contig7855.18457.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI) HSP 1 Score: 207 bits (528), Expect = 2.130e-65 Identity = 102/119 (85.71%), Postives = 110/119 (92.44%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPYTG 358 VVGWILVDQGVRFPG QYAAISQSV AHDPMVA+GNMT++LL F LEMVGGAAIFGAASGSGR PGDFG+DPLNLTSNP+KKAR+EL+EIQHCRLAM AI GIATQ+VLNGG FPYTG Sbjct: 117 VVGWILVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA) HSP 1 Score: 138 bits (347), Expect = 4.480e-38 Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 VVGW+ VD G+R PG +Y +S ++ AHD MV+ GNM +ML A LE++ GAAIF AA GSGR PGDF +DPL L + +K AR++LSE+++ RLAM+A SGIATQ+VL G +FPY Sbjct: 114 VVGWLAVDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPY 229
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A8J5XPQ1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPQ1_DIALT) HSP 1 Score: 110 bits (274), Expect = 1.870e-27 Identity = 53/117 (45.30%), Postives = 78/117 (66.67%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 V GW++VD G+ FPGAQY + +++ AH+ MV +GNM ++L+ LE+ GG A++ A+GSGRA GD+ DPL + + +L EI++ RLAM+A SGI TQ+ L+G PY Sbjct: 84 VAGWLVVDLGIHFPGAQYEGL-RALTAHNAMVESGNMWLLLIAVSILELAGGLALYEQANGSGRAAGDYKFDPLGYAQDEATLQELQLKEIKNGRLAMIAFSGIVTQAALSGRGLPY 199
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK) HSP 1 Score: 110 bits (275), Expect = 5.080e-27 Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTS-NPSKKARFELSEIQHCRLAMMAISGIATQSVLNG-GAFPY 352 V+G + VD G R PGA +A + ++ AHD MVA G M ++LL A E++GGAA++ AA GSGR PGDF +DP +L +P +K F+ EI++ RLAM+ ISGI TQ+ L G FPY Sbjct: 115 VLGCVAVDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPY 233
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN) HSP 1 Score: 107 bits (267), Expect = 3.260e-26 Identity = 59/117 (50.43%), Postives = 73/117 (62.39%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 +VG++ VD G+ FPGA+Y +S S+ AHD MVA+GNM MLL LE++ + AA GSGR GDF DPL T FE +EIQH RLAM+A SG+ TQS L FPY Sbjct: 103 IVGYLTVDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA) HSP 1 Score: 103 bits (258), Expect = 6.550e-25 Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 V G+ D G + PG Q+ S DAH+ V+AG MT+M F LE + G AI + +GSGRA GD+G+DPL L+ P K A ++ EI H RLAM+A SG+ TQ+VL FPY Sbjct: 99 VTGFAATDLGFKLPGEQFNVAS--ADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSDKPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA) HSP 1 Score: 104 bits (260), Expect = 7.070e-25 Identity = 62/146 (42.47%), Postives = 80/146 (54.79%), Query Frame = 2 Query: 5 VGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNL-TSNPSKKARFELSEIQHCR-----------------------------LAMMAISGIATQSVLNGGAFPY 352 +GW+ D G RFPG Y+ IS ++ AHD MV GNM +L F +E++ GAAI+ AA GSGRAPGD+G DPL L N +KKA + L EI++ R LAM+ SGI TQ+ L G +FPY Sbjct: 103 LGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.220e-24 Identity = 62/146 (42.47%), Postives = 80/146 (54.79%), Query Frame = 2 Query: 5 VGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNL-TSNPSKKARFELSEIQHCR-----------------------------LAMMAISGIATQSVLNGGAFPY 352 +GW+ D G RFPG Y+ IS ++ AHD MV GNM +L F +E++ GAAI+ AA GSGRAPGD+G DPL L N +KKA + L EI++ R LAM+ SGI TQ+ L G +FPY Sbjct: 130 LGWVATDLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A0G4FEH5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEH5_VITBC) HSP 1 Score: 104 bits (259), Expect = 1.230e-24 Identity = 58/121 (47.93%), Postives = 75/121 (61.98%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASG--SGRAPGDFGMDPLNL--TSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 V+G++ D G+RFPGAQ+ S + +AHD MVA+GNM +MLL A FLE G I+ G + R PGD+ DPLN N S K E+++ RLAM+A GI TQ+VLN G FPY Sbjct: 136 VLGYVATDLGLRFPGAQFQGFS-AAEAHDKMVASGNMMVMLLAAGFLEFFRGITIWDFTRGFYAEREPGDYNFDPLNFYKNKNDSTKDAMRARELKNGRLAMLAFGGIVTQAVLNDGGFPY 255
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Match: A0A7S2CMP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMP0_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.200e-21 Identity = 54/117 (46.15%), Postives = 65/117 (55.56%), Query Frame = 2 Query: 2 VVGWILVDQGVRFPGAQYAAISQSVDAHDPMVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPSKKARFELSEIQHCRLAMMAISGIATQSVLNGGAFPY 352 + G+I D G R PG QY S AHD V +G MT M + +E V AI +GSGR PGDF +DPL L S+P K L EI H RLAM+A G+ TQ+VL FPY Sbjct: 130 ITGFIATDIGFRLPGEQYDVPSYL--AHDVAVKSGAMTFMFIAISLIETVSFLAIQEMLAGSGRKPGDFNLDPLQLASSPEKLETMLLKEITHARLAMLAFGGLVTQAVLTEKGFPY 244 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7855.18457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7855.18457.1 >prot_M-pyrifera_M_contig7855.18457.1 ID=prot_M-pyrifera_M_contig7855.18457.1|Name=mRNA_M-pyrifera_M_contig7855.18457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp MVAAGNMTIMLLGAFFLEMVGGAAIFGAASGSGRAPGDFGMDPLNLTSNPback to top mRNA from alignment at M-pyrifera_M_contig7855:8121..10491- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7855.18457.1 ID=mRNA_M-pyrifera_M_contig7855.18457.1|Name=mRNA_M-pyrifera_M_contig7855.18457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2371bp|location=Sequence derived from alignment at M-pyrifera_M_contig7855:8121..10491- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7855:8121..10491- >mRNA_M-pyrifera_M_contig7855.18457.1 ID=mRNA_M-pyrifera_M_contig7855.18457.1|Name=mRNA_M-pyrifera_M_contig7855.18457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig7855:8121..10491- (Macrocystis pyrifera P11B4 male)back to top |