mRNA_M-pyrifera_M_contig7851.18451.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7851.18451.1
Unique NamemRNA_M-pyrifera_M_contig7851.18451.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.340e-38
Identity = 136/290 (46.90%), Postives = 145/290 (50.00%), Query Frame = 1
Query:    1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQ---------------------------------------------RGAGAD------------------------GKPSTAAAA----------------------------------------PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543
            RSLKISQRIE+LR MLSQFGVDVK SKSAVLSEATDYIAHLQRQHAQSEAERARILQLL N++                                             RGAG                          G+P++A  A                                        P+       XXX   XXXXXXXXXXXXXXXXXX                VFRT+P+PMAIANVNGNLVDCN RLTQVTGFRKEE LFMTIFDLVAD FLQHTF
Sbjct:  282 RSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTF 571          
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.660e-24
Identity = 100/181 (55.25%), Postives = 122/181 (67.40%), Query Frame = 1
Query:    1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543
            RSLKISQ+I+ELR +L Q GV VK+SKS +L EAT  I  LQR+ A  E ER  +LQL+Q      G  G  S  A    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +F    +P+A+ +VNGN+VDCN R+   TG+R+EE+L +T+F+LVADAFLQ +F
Sbjct:   79 RSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQ------GLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQL-------IFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSF 246          
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.090e-23
Identity = 99/181 (54.70%), Postives = 122/181 (67.40%), Query Frame = 1
Query:    1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543
            RSLKISQRI+ELRL+L Q G+ VK SKS VL E T+ I  L RQ    EAERA +L L+Q    G    G          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +F    +P+A+ ++NGN+V+CN R+   TGFR++E+L +T+F+LVADA+LQ +F
Sbjct:   32 RSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQL----IFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSF 208          
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A7S4JQS6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JQS6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.140e-6
Identity = 70/210 (33.33%), Postives = 95/210 (45.24%), Query Frame = 1
Query:    1 RSLKISQRIEELRLMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGA----------------------GADGKPSTAA------AAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543
            RS +IS++I ELR +LS  GV V K +KSAVL+EA +YI  LQ+   +SE +R +++Q +Q    GA                         G P  +A       A                    XXXXXXXXXX                   VF +  V MAIA++ G  +DCN    Q++ + K+EV  MTIF+L +   LQH F
Sbjct:  261 RSFRISKQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYKSEIDRHQLVQQMQIIGNGALGPQAATAVRHVAAQNGVWSLGNFGGVPPRSAMTYYQQGAYGSPGPATASMDGSQPQQTPXXXXXXXXXXETKPDPQLVSKIDDHEYRYVFNSCSVGMAIASMGGAFIDCNSLFCQLSQYSKQEVCAMTIFNLTSRQDLQHAF 470          
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A7S1B928_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B928_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.140e-6
Identity = 57/183 (31.15%), Postives = 80/183 (43.72%), Query Frame = 1
Query:    1 RSLKISQRIEELRLMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTFR 546
            RS +IS++I  LR +LS  GV V K +KS+VL+EA  YI  LQ+   +SE ER +++Q +Q    G GA G  + AA   T                                              EVF T  V MA+A++ G  V  N      +G+ K+E+  +TIF+L     LQ  F 
Sbjct:  315 RSYQISKQICGLRELLSAGGVIVPKGTKSSVLTEAASYIRMLQQHQYRSEIERQQLIQQIQMI--GKGALGPQAAAAIRHTAAKNGIWPLGSFGGVPPMSAMTSSPRPSGSSTKDSYDYT-------EVFNTTAVAMALASMGGTFVAANKLFLIKSGYTKQELCSLTIFNLTQREDLQTAFE 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ51_ECTSI1.340e-3846.90N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A835Z815_9STRA5.660e-2455.25BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YRU1_9STRA8.090e-2354.70BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4JQS6_9STRA2.140e-633.33Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1B928_9STRA2.140e-631.15Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7851contigM-pyrifera_M_contig7851:2630..3679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue3.8e-11
Seed eggNOG ortholog159749.K0SGS0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helix loop helix domain
EggNOG OGs2C415@1,2T5J0@2759,2XF85@2836
Ec32 ortholog descriptionbHLH and PAS domain protein
Ec32 orthologEc-02_004780.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size549
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.528252-CDS-M-pyrifera_M_contig7851:2629..30091622816687.528252-CDS-M-pyrifera_M_contig7851:2629..3009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7851 2630..3009 +
1692278120.0342066-CDS-M-pyrifera_M_contig7851:2629..30091692278120.0342066-CDS-M-pyrifera_M_contig7851:2629..3009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7851 2630..3009 +
1622816687.5390446-CDS-M-pyrifera_M_contig7851:3510..36791622816687.5390446-CDS-M-pyrifera_M_contig7851:3510..3679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7851 3511..3679 +
1692278120.0464673-CDS-M-pyrifera_M_contig7851:3510..36791692278120.0464673-CDS-M-pyrifera_M_contig7851:3510..3679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7851 3511..3679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7851.18451.1prot_M-pyrifera_M_contig7851.18451.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7851 2630..3679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7851.18451.1

>prot_M-pyrifera_M_contig7851.18451.1 ID=prot_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEA
ERARILQLLQNAQRGAGADGKPSTAAAAPTAAAGSAAAGAAGPSAGGPAP
AVPKAAAAAAAAAAAAAAAAAAAAAAEVFRTVPVPMAIANVNGNLVDCNV
RLTQVTGFRKEEVLFMTIFDLVADAFLQHTFR*
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mRNA from alignment at M-pyrifera_M_contig7851:2630..3679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7851.18451.1 ID=mRNA_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig7851:2630..3679+ (Macrocystis pyrifera P11B4 male)
AGATCGCTCAAGATCAGTCAGCGCATCGAGGAACTGCGGCTGATGCTGAG CCAGTTCGGCGTGGACGTGAAGACGAGCAAGTCCGCCGTCCTGTCGGAGG CCACGGACTACATCGCGCACCTACAGCGCCAGCACGCGCAATCGGAGGCC GAGCGCGCGAGAATTCTTCAGCTGTTGCAGAACGCGCAGCGTGGGGCAGG GGCTGACGGAAAACCCTCGACTGCGGCGGCAGCACCAACAGCGGCCGCCG GCTCTGCCGCAGCAGGCGCTGCCGGCCCCAGCGCAGGTGGTCCAGCACCT GCTGTGCCCAAGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGC AGCGGCAGCGGCGGCGGCGGCGGCGGCAGAGTCATCTGCGGCTGCGGTAG CCGTAGCCGCCCCTGCACCTACCCCCACGATGCATCCGGTGCGAACAGTA AAGCCGCCTCCTTCTGGCGCCCAGCAGAGGACGATTCCGTTAGGTGCGGC GGCTTCGCCGGCTAGCGCCGCCAACTCCGGCGTGGCAAGACCAACGACCG CGCGGTTCACGGCTGTCGAGGGTATGAGCGTGTGCGGGGTCGAGCCGATG TCCGAGTCGTGGATGAACGACGAGGGCGCGGCAGCAGCGGCGGTGGTGGC GGGCGTCGCGCCGCAGCAGGCGGGCGTACCGGGTTTCCCTGGTCTGTCGA TGGCCGCGAGGGGTGGCGTGGAGGGGGTTGTGCCGATGCAGATGCCACCG CCGGGGGGGTTGATGCCGGCATCGGCGGCGTCGGTTGCGGTGGCCGCGCC GGCGGTGGCGTGCGGTGGTGGGGGCGGGGCGACGGACCTGGATGCCACCG CGCGGGCCCTGTCGCACGTTAACTACGACAGGGTGTTCCGGACGGTGCCG GTACCGATGGCGATAGCGAATGTGAACGGCAACCTTGTGGACTGCAACGT GAGATTGACGCAGGTCACCGGGTTCCGGAAGGAGGAGGTGCTGTTCATGA CCATCTTCGACCTCGTGGCCGACGCGTTCCTTCAACACACCTTCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7851:2630..3679+

>mRNA_M-pyrifera_M_contig7851.18451.1 ID=mRNA_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig7851:2630..3679+ (Macrocystis pyrifera P11B4 male)
AGATCGCTCAAGATCAGTCAGCGCATCGAGGAACTGCGGCTGATGCTGAG
CCAGTTCGGCGTGGACGTGAAGACGAGCAAGTCCGCCGTCCTGTCGGAGG
CCACGGACTACATCGCGCACCTACAGCGCCAGCACGCGCAATCGGAGGCC
GAGCGCGCGAGAATTCTTCAGCTGTTGCAGAACGCGCAGCGTGGGGCAGG
GGCTGACGGAAAACCCTCGACTGCGGCGGCAGCACCAACAGCGGCCGCCG
GCTCTGCCGCAGCAGGCGCTGCCGGCCCCAGCGCAGGTGGTCCAGCACCT
GCTGTGCCCAAGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGC
AGCGGCAGCGGCGGCGGCGGCGGCGGCAGAAGATCGCTCAAGATCAGTCA
GCGCATCGAGGAACTGCGGCTGATGCTGAGCCAGTTCGGCGTGGACGTGA
AGACGAGCAAGTCCGCCGTCCTGTCGGAGGCCACGGACTACATCGCGCAC
CTACAGCGCCAGCACGCGCAATCGGAGGCCGAGCGCGCGAGAATTCTTCA
GCTGTTGCAGAACGCGCAGCGTGGGGCAGGGGCTGACGGAAAACCCTCGA
CTGCGGCGGCAGCACCAACAGCGGCCGCCGGCTCTGCCGCAGCAGGCGCT
GCCGGCCCCAGCGCAGGTGGTCCAGCACCTGCTGTGCCCAAGGCAGCGGC
AGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGG
CGGCGGCAGAGGTGTTCCGGACGGTGCCGGTACCGATGGCGATAGCGAAT
GTGAACGGCAACCTTGTGGACTGCAACGTGAGATTGACGCAGGTCACCGG
GTTCCGGAAGGAGGAGGTGCTGTTCATGACCATCTTCGACCTCGTGGCCG
ACGCGTTCCTTCAACACACCTTCAGGTGAGGTGTTCCGGACGGTGCCGGT
ACCGATGGCGATAGCGAATGTGAACGGCAACCTTGTGGACTGCAACGTGA
GATTGACGCAGGTCACCGGGTTCCGGAAGGAGGAGGTGCTGTTCATGACC
ATCTTCGACCTCGTGGCCGACGCGTTCCTTCAACACACCTTCAGGTGA
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