mRNA_M-pyrifera_M_contig7851.18451.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI) HSP 1 Score: 149 bits (376), Expect = 1.340e-38 Identity = 136/290 (46.90%), Postives = 145/290 (50.00%), Query Frame = 1 Query: 1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQ---------------------------------------------RGAGAD------------------------GKPSTAAAA----------------------------------------PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543 RSLKISQRIE+LR MLSQFGVDVK SKSAVLSEATDYIAHLQRQHAQSEAERARILQLL N++ RGAG G+P++A A P+ XXX XXXXXXXXXXXXXXXXXX VFRT+P+PMAIANVNGNLVDCN RLTQVTGFRKEE LFMTIFDLVAD FLQHTF Sbjct: 282 RSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTF 571
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA) HSP 1 Score: 105 bits (261), Expect = 5.660e-24 Identity = 100/181 (55.25%), Postives = 122/181 (67.40%), Query Frame = 1 Query: 1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543 RSLKISQ+I+ELR +L Q GV VK+SKS +L EAT I LQR+ A E ER +LQL+Q G G S A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +F +P+A+ +VNGN+VDCN R+ TG+R+EE+L +T+F+LVADAFLQ +F Sbjct: 79 RSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQLVQ------GLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQL-------IFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSF 246
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA) HSP 1 Score: 101 bits (251), Expect = 8.090e-23 Identity = 99/181 (54.70%), Postives = 122/181 (67.40%), Query Frame = 1 Query: 1 RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543 RSLKISQRI+ELRL+L Q G+ VK SKS VL E T+ I L RQ EAERA +L L+Q G G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +F +P+A+ ++NGN+V+CN R+ TGFR++E+L +T+F+LVADA+LQ +F Sbjct: 32 RSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSAGGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASVGMDYQL----IFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSF 208
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A7S4JQS6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JQS6_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.140e-6 Identity = 70/210 (33.33%), Postives = 95/210 (45.24%), Query Frame = 1 Query: 1 RSLKISQRIEELRLMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGA----------------------GADGKPSTAA------AAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTF 543 RS +IS++I ELR +LS GV V K +KSAVL+EA +YI LQ+ +SE +R +++Q +Q GA G P +A A XXXXXXXXXX VF + V MAIA++ G +DCN Q++ + K+EV MTIF+L + LQH F Sbjct: 261 RSFRISKQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYKSEIDRHQLVQQMQIIGNGALGPQAATAVRHVAAQNGVWSLGNFGGVPPRSAMTYYQQGAYGSPGPATASMDGSQPQQTPXXXXXXXXXXETKPDPQLVSKIDDHEYRYVFNSCSVGMAIASMGGAFIDCNSLFCQLSQYSKQEVCAMTIFNLTSRQDLQHAF 470
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Match: A0A7S1B928_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B928_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.140e-6 Identity = 57/183 (31.15%), Postives = 80/183 (43.72%), Query Frame = 1 Query: 1 RSLKISQRIEELRLMLSQFGVDV-KTSKSAVLSEATDYIAHLQRQHAQSEAERARILQLLQNAQRGAGADGKPSTAAAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVFRTVPVPMAIANVNGNLVDCNVRLTQVTGFRKEEVLFMTIFDLVADAFLQHTFR 546 RS +IS++I LR +LS GV V K +KS+VL+EA YI LQ+ +SE ER +++Q +Q G GA G + AA T EVF T V MA+A++ G V N +G+ K+E+ +TIF+L LQ F Sbjct: 315 RSYQISKQICGLRELLSAGGVIVPKGTKSSVLTEAASYIRMLQQHQYRSEIERQQLIQQIQMI--GKGALGPQAAAAIRHTAAKNGIWPLGSFGGVPPMSAMTSSPRPSGSSTKDSYDYT-------EVFNTTAVAMALASMGGTFVAANKLFLIKSGYTKQELCSLTIFNLTQREDLQTAFE 488 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7851.18451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7851.18451.1 >prot_M-pyrifera_M_contig7851.18451.1 ID=prot_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp RSLKISQRIEELRLMLSQFGVDVKTSKSAVLSEATDYIAHLQRQHAQSEAback to top mRNA from alignment at M-pyrifera_M_contig7851:2630..3679+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7851.18451.1 ID=mRNA_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig7851:2630..3679+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7851:2630..3679+ >mRNA_M-pyrifera_M_contig7851.18451.1 ID=mRNA_M-pyrifera_M_contig7851.18451.1|Name=mRNA_M-pyrifera_M_contig7851.18451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig7851:2630..3679+ (Macrocystis pyrifera P11B4 male)back to top |