mRNA_M-pyrifera_M_contig78489.18446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78489.18446.1
Unique NamemRNA_M-pyrifera_M_contig78489.18446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A078AC40_STYLE (CH_2 domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AC40_STYLE)

HSP 1 Score: 72.0 bits (175), Expect = 8.050e-14
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   31 PALDELELQKIYNWIDEIPLSRPKRNITRDFSDGGK 138
            PALDE E+Q IYNW+DEIPLSRPKRNI RDFSDGGK
Sbjct:    4 PALDEEEMQMIYNWVDEIPLSRPKRNIARDFSDGGK 39
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A7S1CID1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CID1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.690e-12
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   28 APALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            A  LD+ +LQKIY+W+DEIPLSRPKRNITRDFSDG
Sbjct:   47 AAPLDDDQLQKIYSWVDEIPLSRPKRNITRDFSDG 81
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A0V0QAQ9_PSEPJ (Calponin homology domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QAQ9_PSEPJ)

HSP 1 Score: 64.7 bits (156), Expect = 2.460e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   28 APALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            AP L+E EL  IYNWIDEIPLSRPK+NITRDF+DG
Sbjct:    3 APPLNEEELNSIYNWIDEIPLSRPKKNITRDFADG 37
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: J9JC92_9SPIT (DUF1042 multi-domain protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9JC92_9SPIT)

HSP 1 Score: 64.7 bits (156), Expect = 3.930e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   31 PALDELELQKIYNWIDEIPLSRPKRNITRDFSD 129
            PALDE E+Q IYNW+DEIPLSRPKRNI RDFSD
Sbjct:    4 PALDEEEMQIIYNWVDEIPLSRPKRNIARDFSD 36
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A7S3F330_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F330_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-10
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   19 HTSAPALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            H     +D+ ELQ++Y W+DEIPLSRPKRNI RDF+DG
Sbjct:    9 HGKIEMMDDDELQRVYQWVDEIPLSRPKRNIARDFADG 46
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: Q22DM0_TETTS (Sperm flagellar protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22DM0_TETTS)

HSP 1 Score: 62.4 bits (150), Expect = 1.470e-10
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   28 APALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            AP L+E EL +IYNWID IPLSRPK+NITRDF+DG
Sbjct:    3 APPLNEEELNQIYNWIDGIPLSRPKKNITRDFADG 37
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A6A5BQ61_NAEFO (Calponin-homology (CH) domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BQ61_NAEFO)

HSP 1 Score: 62.4 bits (150), Expect = 1.720e-10
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   25 SAPALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            S P  DE ELQ +Y W+DEIPLSRPK+NI RDFSDG
Sbjct:   34 SVPPFDEEELQMLYTWVDEIPLSRPKKNIARDFSDG 69
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A7S1NEJ9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NEJ9_9EUGL)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-10
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   31 PALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            P +DE ELQ +Y W+DEIPLSRPKRNI RDFSDG
Sbjct:    5 PMMDENELQALYQWVDEIPLSRPKRNIARDFSDG 38
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: A0A7J6MPF6_PERCH (Sperm flagellar 1 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MPF6_PERCH)

HSP 1 Score: 62.0 bits (149), Expect = 2.240e-10
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   31 PALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            P   + E+QK+YNW+DEIPLSRPKRNI+RDF+DG
Sbjct:   10 PLASDAEIQKLYNWVDEIPLSRPKRNISRDFADG 43
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BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Match: C3YJ05_BRAFL (Calponin-homology (CH) domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YJ05_BRAFL)

HSP 1 Score: 62.0 bits (149), Expect = 2.480e-10
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   28 APALDELELQKIYNWIDEIPLSRPKRNITRDFSDG 132
            A  LDE  LQ++Y+WIDEIPLSRPK+NITRDFSDG
Sbjct:    2 AGELDEESLQELYSWIDEIPLSRPKKNITRDFSDG 36
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78489.18446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078AC40_STYLE8.050e-1486.11CH_2 domain-containing protein n=1 Tax=Stylonychia... [more]
A0A7S1CID1_9STRA8.690e-1280.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0V0QAQ9_PSEPJ2.460e-1180.00Calponin homology domain n=1 Tax=Pseudocohnilembus... [more]
J9JC92_9SPIT3.930e-1184.85DUF1042 multi-domain protein n=1 Tax=Oxytricha tri... [more]
A0A7S3F330_9EUKA1.340e-1063.16Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
Q22DM0_TETTS1.470e-1077.14Sperm flagellar protein n=1 Tax=Tetrahymena thermo... [more]
A0A6A5BQ61_NAEFO1.720e-1072.22Calponin-homology (CH) domain-containing protein n... [more]
A0A7S1NEJ9_9EUGL1.770e-1076.47Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7J6MPF6_PERCH2.240e-1070.59Sperm flagellar 1 n=1 Tax=Perkinsus chesapeaki Tax... [more]
C3YJ05_BRAFL2.480e-1077.14Calponin-homology (CH) domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78489contigM-pyrifera_M_contig78489:723..860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog5911.EAR83434
Preferred nameSPEF1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0007026,GO:0007498,GO:0008017,GO:0008092,GO:0008150,GO:0009888,GO:0009987,GO:0010639,GO:0015631,GO:0016477,GO:0031110,GO:0031111,GO:0031114,GO:0031514,GO:0032502,GO:0032838,GO:0032886,GO:0033043,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0070507,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.CAMSAP CH domain
EggNOG OGs2CSC3@1,2S497@2759,3ZBUQ@5878
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.1824577-CDS-M-pyrifera_M_contig78489:722..8601622816687.1824577-CDS-M-pyrifera_M_contig78489:722..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78489 723..860 +
1692278119.8241255-CDS-M-pyrifera_M_contig78489:722..8601692278119.8241255-CDS-M-pyrifera_M_contig78489:722..860Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78489 723..860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78489.18446.1prot_M-pyrifera_M_contig78489.18446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78489 723..860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78489.18446.1

>prot_M-pyrifera_M_contig78489.18446.1 ID=prot_M-pyrifera_M_contig78489.18446.1|Name=mRNA_M-pyrifera_M_contig78489.18446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MSFGESHTSAPALDELELQKIYNWIDEIPLSRPKRNITRDFSDGGK
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mRNA from alignment at M-pyrifera_M_contig78489:723..860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78489.18446.1 ID=mRNA_M-pyrifera_M_contig78489.18446.1|Name=mRNA_M-pyrifera_M_contig78489.18446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig78489:723..860+ (Macrocystis pyrifera P11B4 male)
ATGTCATTTGGGGAAAGCCACACAAGTGCTCCGGCACTGGATGAGCTGGA
GCTGCAGAAGATCTACAATTGGATCGACGAGATTCCCTTGTCCCGGCCGA
AGCGCAATATTACGAGGGATTTTAGTGATGGGGGTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78489:723..860+

>mRNA_M-pyrifera_M_contig78489.18446.1 ID=mRNA_M-pyrifera_M_contig78489.18446.1|Name=mRNA_M-pyrifera_M_contig78489.18446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig78489:723..860+ (Macrocystis pyrifera P11B4 male)
ATGTCATTTGGGGAAAGCCACACAAGTGCTCCGGCACTGGATGAGCTGGA
GCTGCAGAAGATCTACAATTGGATCGACGAGATTCCCTTGTCCCGGCCGA
AGCGCAATATTACGAGGGATTTTAGTGATGGGGGTAAGATGTCATTTGGG
GAAAGCCACACAAGTGCTCCGGCACTGGATGAGCTGGAGCTGCAGAAGAT
CTACAATTGGATCGACGAGATTCCCTTGTCCCGGCCGAAGCGCAATATTA
CGAGGGATTTTAGTGATGGGGGTAAG
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