mRNA_M-pyrifera_M_contig78488.18445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig78488.18445.1
Unique Name	mRNA_M-pyrifera_M_contig78488.18445.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A7Z9PV29_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A7Z9PV29_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 1.710e-23
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            HAKEVYVVWKPSKNPSPFITETATKVF STE+AL YFEE GMFAEKNLFG+
Sbjct:  328 HAKEVYVVWKPSKNPSPFITETATKVFDSTEDALSYFEEKGMFAEKNLFGH 378

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A3D0JZH5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D0JZH5_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 8.200e-22
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H KEVYVVWKP KNPSPFITETATK+FTS EEAL YFE  GMFA  +LFG+
Sbjct:   28 HTKEVYVVWKPKKNPSPFITETATKIFTSVEEALAYFENEGMFAPGDLFGH 78

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: UPI0019954046 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019954046)

HSP 1 Score: 89.0 bits (219), Expect = 2.880e-21
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H KEVY+VWKP K+PSPFITETATKVF STEEAL YFE  GMF E+NLFG+
Sbjct:  101 HTKEVYIVWKPKKSPSPFITETATKVFRSTEEALGYFESAGMFGERNLFGH 151

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: UPI001ACBE921 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001ACBE921)

HSP 1 Score: 92.0 bits (227), Expect = 8.490e-21
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H KEV+VVWKP K PSPFI+ETAT++F STEEALKYFE+NG F+EKNLFGN
Sbjct:  323 HTKEVFVVWKPKKTPSPFISETATRIFKSTEEALKYFEDNGYFSEKNLFGN 373

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A651FAH4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651FAH4_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 1.290e-20
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H K+VYVVWKP K+PSPFITETAT++F STEEAL +FEEN + A+ NLFGN
Sbjct:   52 HTKDVYVVWKPKKSPSPFITETATRIFKSTEEALSHFEENNLLAQTNLFGN 102

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A7C5WKU6_9BACT (AAA family ATPase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WKU6_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 1.750e-20
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFG 150
            HAKEVYVVWKP+K PSPFITET+TKVFTST+EAL YFEE GMFA  NLFG
Sbjct:  331 HAKEVYVVWKPTKAPSPFITETSTKVFTSTDEALNYFEEKGMFAPTNLFG 380

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A518BY76_9BACT (Adenylate kinase n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518BY76_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.100e-20
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFG 150
            H KEVYVVWKP+KNPSPFITETAT+VFTST+EAL YFE +GMF + NLFG
Sbjct:  321 HGKEVYVVWKPAKNPSPFITETATRVFTSTDEALAYFESSGMFVQHNLFG 370

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A7Y5SUY5_9BACT (AAA family ATPase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5SUY5_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.210e-20
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H KEVYVVWKP K PSPFITETATK+F ST+EAL YFE  GMFAEKNLFG+
Sbjct:  325 HTKEVYVVWKPKKAPSPFITETATKIFASTDEALAYFEAEGMFAEKNLFGH 375

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A3M2B9T9_9BACT (AAA family ATPase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2B9T9_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 3.290e-20
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            HAKEVYVVWKP KNPSPFITETATKVF S ++AL YF+E GMF+ +NLFGN
Sbjct:  328 HAKEVYVVWKPKKNPSPFITETATKVFDSVDDALTYFDEQGMFSARNLFGN 378

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BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Match: A0A2D5B7J0_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B7J0_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 8.690e-20
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    1 HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFGN 153
            H KEVYVVWKP KNPSPFITETATK+F+S +EAL YFEE GMFA  NLFG+
Sbjct:  327 HTKEVYVVWKPKKNPSPFITETATKIFSSVDEALAYFEEQGMFAPGNLFGH 377

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig78488.18445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7Z9PV29_9BACT	1.710e-23	90.20	Uncharacterized protein n=3 Tax=Phycisphaerae TaxI...	[more]
A0A3D0JZH5_9BACT	8.200e-22	78.43	Uncharacterized protein n=1 Tax=Phycisphaerales ba...	[more]
UPI0019954046	2.880e-21	78.43	Uncharacterized protein n=1 Tax=Phycisphaerales ba...	[more]
UPI001ACBE921	8.490e-21	78.43	Uncharacterized protein n=1 Tax=Phycisphaerales ba...	[more]
A0A651FAH4_9BACT	1.290e-20	72.55	Uncharacterized protein (Fragment) n=1 Tax=Phycisp...	[more]
A0A7C5WKU6_9BACT	1.750e-20	84.00	AAA family ATPase n=1 Tax=Phycisphaerales bacteriu...	[more]
A0A518BY76_9BACT	3.100e-20	80.00	Adenylate kinase n=1 Tax=Mucisphaera calidilacus T...	[more]
A0A7Y5SUY5_9BACT	3.210e-20	80.39	AAA family ATPase n=1 Tax=Phycisphaerales bacteriu...	[more]
A0A3M2B9T9_9BACT	3.290e-20	78.43	AAA family ATPase n=1 Tax=Planctomycetes bacterium...	[more]
A0A2D5B7J0_9BACT	8.690e-20	78.43	Uncharacterized protein n=2 Tax=Phycisphaerae bact...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig78488	contig	M-pyrifera_M_contig78488:2..157 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	77.0
Seed ortholog evalue	2.8e-12
Seed eggNOG ortholog	1142394.PSMK_11820
KEGG rclass	RC00002
KEGG ko	ko:K00939
KEGG Reaction	R00127,R01547,R11319
KEGG Pathway	ko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG Module	M00049
Hectar predicted targeting category	no signal peptide or anchor
EggNOG free text desc.	adenylate kinase activity
EggNOG OGs	COG2019@1,COG2019@2
EC	2.7.4.3
COG Functional cat.	F
Best tax level	Bacteria
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147
Exons	1
Model size	156
Cds size	156
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816687.1483061-CDS-M-pyrifera_M_contig78488:1..157	1622816687.1483061-CDS-M-pyrifera_M_contig78488:1..157	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78488 2..157 +
1692278119.812502-CDS-M-pyrifera_M_contig78488:1..157	1692278119.812502-CDS-M-pyrifera_M_contig78488:1..157	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig78488 2..157 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig78488.18445.1	prot_M-pyrifera_M_contig78488.18445.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig78488 2..157 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig78488:2..157+
coding sequence from alignment at M-pyrifera_M_contig78488:2..157+

protein sequence of mRNA_M-pyrifera_M_contig78488.18445.1

>prot_M-pyrifera_M_contig78488.18445.1 ID=prot_M-pyrifera_M_contig78488.18445.1|Name=mRNA_M-pyrifera_M_contig78488.18445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
HAKEVYVVWKPSKNPSPFITETATKVFTSTEEALKYFEENGMFAEKNLFG
N*

mRNA from alignment at M-pyrifera_M_contig78488:2..157+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig78488.18445.1 ID=mRNA_M-pyrifera_M_contig78488.18445.1|Name=mRNA_M-pyrifera_M_contig78488.18445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig78488:2..157+ (Macrocystis pyrifera P11B4 male)
CACGCAAAAGAAGTCTATGTCGTCTGGAAACCCTCCAAAAACCCCTCGCC
GTTCATCACCGAGACCGCGACCAAAGTCTTCACATCGACAGAAGAAGCGC
TCAAGTACTTCGAAGAGAACGGCATGTTCGCCGAAAAGAACCTCTTCGGG
AACTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78488:2..157+

>mRNA_M-pyrifera_M_contig78488.18445.1 ID=mRNA_M-pyrifera_M_contig78488.18445.1|Name=mRNA_M-pyrifera_M_contig78488.18445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig78488:2..157+ (Macrocystis pyrifera P11B4 male)
CACGCAAAAGAAGTCTATGTCGTCTGGAAACCCTCCAAAAACCCCTCGCC
GTTCATCACCGAGACCGCGACCAAAGTCTTCACATCGACAGAAGAAGCGC
TCAAGTACTTCGAAGAGAACGGCATGTTCGCCGAAAAGAACCTCTTCGGG
AACTAACACGCAAAAGAAGTCTATGTCGTCTGGAAACCCTCCAAAAACCC
CTCGCCGTTCATCACCGAGACCGCGACCAAAGTCTTCACATCGACAGAAG
AAGCGCTCAAGTACTTCGAAGAGAACGGCATGTTCGCCGAAAAGAACCTC
TTCGGGAACTAA