mRNA_M-pyrifera_M_contig7848.18440.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7848.18440.1
Unique NamemRNA_M-pyrifera_M_contig7848.18440.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7848.18440.1 vs. uniprot
Match: A0A6H5KZ75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ75_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.110e-5
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 MDNIIQRFEKVLSFRESREET-------TALPKQPPLPQPEPVKDSRDRSVSARPMTVXXXXXXXXXXXXXXXSVASSLHFDDELSALGSAQSNTKHNENTERYRR 297
            MDN++QR        ++  E        +A P+ PPLP P P  ++R R VSAR +T+   XXXXXXXXXXXXSVAS LHFDDELSA  S  SN++H E+ +R +R
Sbjct:  106 MDNVVQRLATYFPPDDTEGEPNTDVVPPSAAPELPPLPLPPP-DNARGRYVSARVLTMDRAXXXXXXXXXXXXSVASGLHFDDELSA--STASNSRHGEDEQRAKR 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7848.18440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ75_9PHAE4.110e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7848contigM-pyrifera_M_contig7848:3962..4568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004540.1
Exons2
Model size371
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.9372888-CDS-M-pyrifera_M_contig7848:3961..40921622816686.9372888-CDS-M-pyrifera_M_contig7848:3961..4092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7848 3962..4092 -
1692278119.701697-CDS-M-pyrifera_M_contig7848:3961..40921692278119.701697-CDS-M-pyrifera_M_contig7848:3961..4092Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7848 3962..4092 -
1622816686.9490848-CDS-M-pyrifera_M_contig7848:4330..45681622816686.9490848-CDS-M-pyrifera_M_contig7848:4330..4568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7848 4331..4568 -
1692278119.7168918-CDS-M-pyrifera_M_contig7848:4330..45681692278119.7168918-CDS-M-pyrifera_M_contig7848:4330..4568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7848 4331..4568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7848.18440.1prot_M-pyrifera_M_contig7848.18440.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7848 3962..4568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7848.18440.1

>prot_M-pyrifera_M_contig7848.18440.1 ID=prot_M-pyrifera_M_contig7848.18440.1|Name=mRNA_M-pyrifera_M_contig7848.18440.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MDNIIQRFEKVLSFRESREETTALPKQPPLPQPEPVKDSRDRSVSARPMT
VDRAVSAWRLTTDRAVSVASSLHFDDELSALGSAQSNTKHNENTERYRRG
QRRMTALRRRSRDRGGRNGANKR
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mRNA from alignment at M-pyrifera_M_contig7848:3962..4568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7848.18440.1 ID=mRNA_M-pyrifera_M_contig7848.18440.1|Name=mRNA_M-pyrifera_M_contig7848.18440.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=607bp|location=Sequence derived from alignment at M-pyrifera_M_contig7848:3962..4568- (Macrocystis pyrifera P11B4 male)
ATGGACAACATCATCCAACGTTTCGAAAAGGTATTATCTTTTCGTGAGAG
TCGGGAAGAAACAACGGCACTTCCTAAACAACCCCCCTTGCCCCAACCGG
AGCCGGTGAAAGACTCGAGAGATAGGTCGGTGTCTGCAAGGCCCATGACA
GTGGATCGAGCAGTGTCTGCTTGGCGTCTGACAACGGATCGGGCTGTTTC
GGTGGCAAGCAGTTTACACTTCGACGACGAGCTTTCAGGCAAGTGGCACG
CAAACCACTCGGATGGCGGTAGATGCAAGCAGGTCGGCTTTCGAAAACAA
AATCGCGTGTTTTACCAGGGCAGCAAGCATAGGTGAAGCTCCTTGTGTTC
ATGCTCTCACCCGCTCCACCCCCGAAGGAATGACGTCGCGGTTACGAAGG
ACTTGCAGCAAAAATGCCAGCGCCTCCATCCTCGTCTAACATGTTTGTCC
CCAAACTTACTTTTGCCTCGCATTAGCATTAGGTTCAGCGCAATCGAACA
CCAAGCACAACGAAAACACAGAGCGCTACAGACGAGGGCAAAGGAGAATG
ACGGCGCTTAGAAGAAGAAGCAGGGACCGGGGAGGGAGGAACGGAGCCAA
CAAACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7848:3962..4568-

>mRNA_M-pyrifera_M_contig7848.18440.1 ID=mRNA_M-pyrifera_M_contig7848.18440.1|Name=mRNA_M-pyrifera_M_contig7848.18440.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig7848:3962..4568- (Macrocystis pyrifera P11B4 male)
ATGGACAACATCATCCAACGTTTCGAAAAGGTATTATCTTTTCGTGAGAG
TCGGGAAGAAACAACGGCACTTCCTAAACAACCCCCCTTGCCCCAACCGG
AGCCGGTGAAAGACTCGAGAGATAGGTCGGTGTCTGCAAGGCCCATGACA
GTGGATCGAGCAGTGTCTGCTTGGCGTCTGACAACGGATCGGGCTGTTTC
GGTGGCAAGCAGTTTACACTTCGACGACGAGCTTTCAGATGGACAACATC
ATCCAACGTTTCGAAAAGGTATTATCTTTTCGTGAGAGTCGGGAAGAAAC
AACGGCACTTCCTAAACAACCCCCCTTGCCCCAACCGGAGCCGGTGAAAG
ACTCGAGAGATAGGTCGGTGTCTGCAAGGCCCATGACAGTGGATCGAGCA
GTGTCTGCTTGGCGTCTGACAACGGATCGGGCTGTTTCGGTGGCAAGCAG
TTTACACTTCGACGACGAGCTTTCAGCATTAGGTTCAGCGCAATCGAACA
CCAAGCACAACGAAAACACAGAGCGCTACAGACGAGGGCAAAGGAGAATG
ACGGCGCTTAGAAGAAGAAGCAGGGACCGGGGAGGGAGGAACGGAGCCAA
CAAACGCCATTAGGTTCAGCGCAATCGAACACCAAGCACAACGAAAACAC
AGAGCGCTACAGACGAGGGCAAAGGAGAATGACGGCGCTTAGAAGAAGAA
GCAGGGACCGGGGAGGGAGGAACGGAGCCAACAAACGC
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