mRNA_M-pyrifera_M_contig78439.18436.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78439.18436.1
Unique NamemRNA_M-pyrifera_M_contig78439.18436.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A7J9A4U3_9ROSI (TPT domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9A4U3_9ROSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.770e-6
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AALS   Y   S+ +L  ++P  H++ N +K VVVIV++ +F     S++  +G GIA+ GV+LY+R
Sbjct:  176 LLAALSFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSLINSLGTGIALAGVFLYSR 244
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A2P5W924_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5W924_GOSBA)

HSP 1 Score: 52.0 bits (123), Expect = 9.160e-6
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AALS   Y   S+ +L  ++P  H++ N +K VVVIV++ +F     S++  +G GIA+ GV+LY+R
Sbjct:  242 LLAALSFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSLINSLGTGIALAGVFLYSR 310
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A0D2T995_GOSRA (TPT domain-containing protein n=25 Tax=Gossypium TaxID=3633 RepID=A0A0D2T995_GOSRA)

HSP 1 Score: 52.0 bits (123), Expect = 9.600e-6
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AALS   Y   S+ +L  ++P  H++ N +K VVVIV++ +F     S++  +G GIA+ GV+LY+R
Sbjct:  325 LLAALSFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSLINSLGTGIALAGVFLYSR 393
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A7S1C3Q2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3Q2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.660e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   40 ALSHAGYTLCS---FAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNRESAAEKA 258
            AL  A Y L S   + ++  ++P  HA+AN+ K  ++I+A+  F G+  S M   G G+ +VGV LYNRE A E A
Sbjct:   32 ALDGASYHLQSVFAYQLMGEISPVTHAVANTAKRALLILASVRFFGNPLSWMSVGGIGLVVVGVLLYNRERAREAA 107
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A022Q2F3_ERYGU (TPT domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q2F3_ERYGU)

HSP 1 Score: 50.1 bits (118), Expect = 4.590e-5
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AAL    Y   S+ +L  ++P  H++AN +K VVVIV + +F     S++  +G GIA+ GV++Y+R
Sbjct:  332 LVAALCFHAYQQVSYMILQRVSPVTHSVANCVKRVVVIVTSVLFFRTPVSLINAIGTGIALAGVFIYSR 400
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A2P5DFY9_PARAD (Triose phosphate/phosphoenolpyruvate translocator n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5DFY9_PARAD)

HSP 1 Score: 49.7 bits (117), Expect = 6.280e-5
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AAL    Y   S+ +L  ++P  H++ N +K VVVIV++ +F     S++  +G G+A+ GV+LY+R
Sbjct:  338 LLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSLINSLGTGVALAGVFLYSR 406
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BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Match: A0A803PA73_CANSA (TPT domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PA73_CANSA)

HSP 1 Score: 49.3 bits (116), Expect = 8.590e-5
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   31 LFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVAASVFLGDAPSVMQFVGAGIAIVGVYLYNR 237
            L AAL    Y   S+ +L  ++P  H++ N +K VVVIV++ +F     S++  +G G+A+ GV+LY+R
Sbjct:  337 LIAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQSPVSLINSLGTGVALSGVFLYSR 405
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78439.18436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7J9A4U3_9ROSI7.770e-640.58TPT domain-containing protein n=2 Tax=Gossypium Ta... [more]
A0A2P5W924_GOSBA9.160e-640.58Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
A0A0D2T995_GOSRA9.600e-640.58TPT domain-containing protein n=25 Tax=Gossypium T... [more]
A0A7S1C3Q2_9STRA3.660e-540.79Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A022Q2F3_ERYGU4.590e-539.13TPT domain-containing protein n=1 Tax=Erythranthe ... [more]
A0A2P5DFY9_PARAD6.280e-537.68Triose phosphate/phosphoenolpyruvate translocator ... [more]
A0A803PA73_CANSA8.590e-537.68TPT domain-containing protein n=1 Tax=Cannabis sat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78439contigM-pyrifera_M_contig78439:321..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.6933975-CDS-M-pyrifera_M_contig78439:320..5841622816686.6933975-CDS-M-pyrifera_M_contig78439:320..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78439 321..584 +
1692278119.5451577-CDS-M-pyrifera_M_contig78439:320..5841692278119.5451577-CDS-M-pyrifera_M_contig78439:320..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78439 321..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78439.18436.1prot_M-pyrifera_M_contig78439.18436.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78439 321..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78439.18436.1

>prot_M-pyrifera_M_contig78439.18436.1 ID=prot_M-pyrifera_M_contig78439.18436.1|Name=mRNA_M-pyrifera_M_contig78439.18436.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MGASASWQFALFAALSHAGYTLCSFAVLSSLTPAAHAIANSMKHVVVIVA
ASVFLGDAPSVMQFVGAGIAIVGVYLYNRESAAEKARN
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mRNA from alignment at M-pyrifera_M_contig78439:321..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78439.18436.1 ID=mRNA_M-pyrifera_M_contig78439.18436.1|Name=mRNA_M-pyrifera_M_contig78439.18436.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig78439:321..584+ (Macrocystis pyrifera P11B4 male)
ATGGGAGCGTCTGCGTCGTGGCAATTTGCGCTGTTTGCTGCTCTGAGTCA
TGCTGGATACACGCTGTGCAGTTTTGCAGTGCTCTCCTCTCTCACCCCTG
CAGCTCACGCGATTGCAAACTCGATGAAGCACGTCGTGGTCATCGTTGCA
GCCTCAGTGTTCCTTGGTGACGCCCCCTCCGTCATGCAATTCGTGGGTGC
CGGTATCGCCATCGTGGGGGTGTACCTCTACAACAGAGAGTCAGCAGCAG
AAAAAGCCAGAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78439:321..584+

>mRNA_M-pyrifera_M_contig78439.18436.1 ID=mRNA_M-pyrifera_M_contig78439.18436.1|Name=mRNA_M-pyrifera_M_contig78439.18436.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig78439:321..584+ (Macrocystis pyrifera P11B4 male)
ATGGGAGCGTCTGCGTCGTGGCAATTTGCGCTGTTTGCTGCTCTGAGTCA
TGCTGGATACACGCTGTGCAGTTTTGCAGTGCTCTCCTCTCTCACCCCTG
CAGCTCACGCGATTGCAAACTCGATGAAGCACGTCGTGGTCATCGTTGCA
GCCTCAGTGTTCCTTGGTGACGCCCCCTCCGTCATGCAATTCGTGGGTGC
CGGTATCGCCATCGTGGGGGTGTACCTCTACAACAGAGAGTCAGCAGCAG
AAAAAGCCAGAAACATGGGAGCGTCTGCGTCGTGGCAATTTGCGCTGTTT
GCTGCTCTGAGTCATGCTGGATACACGCTGTGCAGTTTTGCAGTGCTCTC
CTCTCTCACCCCTGCAGCTCACGCGATTGCAAACTCGATGAAGCACGTCG
TGGTCATCGTTGCAGCCTCAGTGTTCCTTGGTGACGCCCCCTCCGTCATG
CAATTCGTGGGTGCCGGTATCGCCATCGTGGGGGTGTACCTCTACAACAG
AGAGTCAGCAGCAGAAAAAGCCAGAAAC
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