mRNA_M-pyrifera_M_contig78435.18435.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78435.18435.1
Unique NamemRNA_M-pyrifera_M_contig78435.18435.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: A0A2D9C5I5_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C5I5_9BACT)

HSP 1 Score: 181 bits (459), Expect = 5.360e-48
Identity = 111/254 (43.70%), Postives = 151/254 (59.45%), Query Frame = 1
Query:  118 ESIIEAYTTLAMPDVLEQSTAVNAALRGNP---STSELALARPVDDWLNSMLFDGDEGQRQAAFDAYAS--------RADIVAAELSDAIDLPLAGHSLLKWTLAELRNLRDNAESLVIADTYLIE-NGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLVEESSSCSPADFTAD-GVLDIFDVLAFVNLFNAEDP 840
            ES+I+AY TL MP  +++S  + AALRG P   +  EL +       L + +F  D     A   + AS        R DI+  E+   +  P A    + W LAEL +LR  A  L   DTY    NGS  +   DG+L+ND+ QEY +++VDL+YE DPEYVAP+HG +++NADGSFSYQADPGFVG D F+YRSTT V G+ +  +S P +V++ V  + +C+ AD     G L+ FDV AF+  FNA DP
Sbjct:  912 ESLIDAYVTLGMPLEMQESEVLRAALRGTPDLVTPRELGIRSGDVFGLVADMFTNDTTSDWADPGSDASQIGTLLRDRIDIIEKEIERGLQRPSATPGYVGWMLAELSHLRGTASELATDDTYSAGINGSIEVSPTDGLLSNDVMQEYSSVLVDLSYETDPEYVAPKHGQVTVNADGSFSYQADPGFVGSDSFTYRSTTTVNGTANTVYSAPATVMIKVS-NPACNSADLEEPYGELNFFDVSAFLIAFNASDP 1164          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: UPI001BAB42EC (Ig-like domain-containing protein n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAB42EC)

HSP 1 Score: 67.4 bits (163), Expect = 6.400e-9
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  439 IADTYLIENGSA-TIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLVEESSSCSPAD 768
            +AD Y ++ G A T+    GVLAND D   +++   LA         PQHGTL+LNADGSF+Y  + GF G D F+Y ++  +T         PT+V L V   +  + AD
Sbjct:  529 VADGYAVKAGHALTVGAASGVLANDTDNNGQSLAATLATN-----GGPQHGTLTLNADGSFTYTPNAGFAGTDSFTYIASDSLTAGT------PTTVTLTVAAQAPTATAD 628          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: UPI001D084111 (FG-GAP-like repeat-containing protein n=1 Tax=Rhodobacter sp. Har01 TaxID=2883999 RepID=UPI001D084111)

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-8
Identity = 55/146 (37.67%), Postives = 71/146 (48.63%), Query Frame = 1
Query:  421 NAESLVIADTY-LIENGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRST--------------------TIVTGSRDEAFSKPTSVVLLVEESSSCSPADFTADGVLDI 795
            NA  L   D+Y L  +G+ ++  EDGVL ND D E   + V L         +P HGT++LNADGSFSY A+ G+ G D F+Y  T                     +VTG+   AFSK T V   +  +     ADF  DG LDI
Sbjct:  207 NAVPLSTDDSYQLASDGTLSVAAEDGVLRNDRDPEGGVLAVTLGS-------SPAHGTVTLNADGSFSYSANAGYTGPDSFAYTVTDALGATATATVSLQPDNTAPVLVTGT--SAFSK-TVVSTAMPLTHIALAADFDLDGDLDI 342          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: L0D5Y2_SINAD (Putative membrane protein n=5 Tax=Singulisphaera acidiphila TaxID=466153 RepID=L0D5Y2_SINAD)

HSP 1 Score: 63.9 bits (154), Expect = 9.950e-8
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  433 LVIADTYLIENGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFS 711
            + + D Y+ E G+       GVL NDI      +   L          P HGTL+LNA+GSF+Y  DPG+ G D+F+YR+T  VT S   A S
Sbjct: 1636 IAVPDQYVTEEGTPLAVPGPGVLGNDISPNGTPLTAVLV-------TGPSHGTLTLNANGSFNYIPDPGYFGSDQFTYRNTDGVTFSNSAAVS 1721          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: A0A3A0DYW7_9BACT (Peptidylprolyl isomerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DYW7_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-7
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  433 LVIADTYLIE-NGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGS 693
            + + DTY++  N + T+ Q  G+LAND D +  N+   L          P +GTL+LNA+GSF+Y  + GFVG D F+YR++  V+ S
Sbjct: 1750 VAVVDTYVVNRNTTLTVDQAGGLLANDSDPDSTNLTAQLVTN-------PTNGTLTLNANGSFTYVPNTGFVGTDTFTYRASDGVSSS 1830          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: A0A539DD41_9BACT (Outer membrane adhesin-like protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A539DD41_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.980e-7
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  391 TLAELRNLRDNAESLVIADTY-LIENGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYV----APQHGTLSLNADGSFSYQADPGFVGIDRFSYRST 675
            T   +  +  NA    +AD+Y L +NGS  I    GVLAND D +            DP  V     PQHGTL+LN DGSF+Y    GF G+D FSYR++
Sbjct:  377 TTVSINVVNHNALPDAVADSYELDKNGSLVIDAAGGVLANDGDAD------------DPLTVEVVNGPQHGTLTLNPDGSFTYVPHAGFHGVDSFSYRAS 464          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: A0A7X5YND2_9CAUL (VCBS repeat-containing protein n=1 Tax=Brevundimonas alba TaxID=74314 RepID=A0A7X5YND2_9CAUL)

HSP 1 Score: 62.4 bits (150), Expect = 2.990e-7
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  412 LRDNAESLVIADTYLIE-NGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRST 675
            + +NA  +   D Y ++ +G  T+ + +GVLAND D +   + V++          P +GTL+LNADGSF+Y  +PGF G D FSYR++
Sbjct:  391 VNNNAAPVAADDAYRLDKDGILTVERANGVLANDADADGDVLTVEVT-------TGPANGTLTLNADGSFTYIPNPGFHGSDNFSYRTS 472          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: UPI001BAAC8E7 (Ig-like domain-containing protein n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAAC8E7)

HSP 1 Score: 60.5 bits (145), Expect = 1.350e-6
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  445 DTYLIENG-SATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLV 738
            DTY I    +AT+    GVLAND+D    ++   LA     +   P HGTL+LNA+GSF+Y    GFVG D F+Y +       +D   S PT+V L V
Sbjct: 1139 DTYAIAGDKAATVAAAQGVLANDVDNNGLSLTAVLA-----QNGGPSHGTLTLNANGSFTYTPTLGFVGTDSFTYLA-------QDSLSSTPTTVTLNV 1225          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: UPI001BA517B4 (Ig-like domain-containing protein n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BA517B4)

HSP 1 Score: 60.1 bits (144), Expect = 1.840e-6
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  445 DTYLIENGS-ATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLV 738
            DTY I     AT+    GVLAND+D    N  + L+  L P    P+HGTL+LNADGSF+Y    GFVG D F+Y +       +D   S P +V L V
Sbjct: 1340 DTYAIAGDKVATVAAAQGVLANDVD----NNGISLSAVLAPNG-GPKHGTLTLNADGSFTYTPTLGFVGTDSFTYLA-------QDSLSSTPATVTLNV 1426          
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Match: A0A3A0DSW7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DSW7_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-6
Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  445 DTYLIENGSATIPQED-GVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSLNADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLVEESSSCSPADFTADGVLDIFDVLAFV 816
            D Y++ N    I     GVL ND D     ++V L+        +P HG+LSL ADGSF+Y  DPGFVGID F+YR   +  GS   AF+  T++V +V +    +     AD   D+FD  A V
Sbjct:  624 DRYVVRNNRTIIVSAAAGVLLNDFDLNGDEMLVALSS-------SPIHGSLSLAADGSFAYTPDPGFVGIDSFTYR---LSDGSG--AFAVATAIVHVVPQHDPINGIPL-ADH--DVFDAAAGV 733          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78435.18435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9C5I5_9BACT5.360e-4843.70Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
UPI001BAB42EC6.400e-938.74Ig-like domain-containing protein n=1 Tax=Caulobac... [more]
UPI001D0841111.500e-837.67FG-GAP-like repeat-containing protein n=1 Tax=Rhod... [more]
L0D5Y2_SINAD9.950e-839.78Putative membrane protein n=5 Tax=Singulisphaera a... [more]
A0A3A0DYW7_9BACT1.370e-739.77Peptidylprolyl isomerase n=1 Tax=Planctomycetes ba... [more]
A0A539DD41_9BACT2.980e-742.00Outer membrane adhesin-like protein n=1 Tax=bacter... [more]
A0A7X5YND2_9CAUL2.990e-739.33VCBS repeat-containing protein n=1 Tax=Brevundimon... [more]
UPI001BAAC8E71.350e-641.41Ig-like domain-containing protein n=1 Tax=Caulobac... [more]
UPI001BA517B41.840e-643.43Ig-like domain-containing protein n=1 Tax=Caulobac... [more]
A0A3A0DSW7_9BACT2.250e-639.20Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78435contigM-pyrifera_M_contig78435:4..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog886293.Sinac_0216
KEGG koko:K11904
KEGG TC3.A.23.1
KEGG Pathwayko03070,map03070
KEGG ModuleM00334
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative Flp pilus-assembly TadE/G-like
EggNOG OGs2J54T@203682,COG4655@1,COG4655@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size840
Cds size840
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.657473-CDS-M-pyrifera_M_contig78435:3..8431622816686.657473-CDS-M-pyrifera_M_contig78435:3..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78435 4..843 -
1692278119.533836-CDS-M-pyrifera_M_contig78435:3..8431692278119.533836-CDS-M-pyrifera_M_contig78435:3..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78435 4..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78435.18435.1prot_M-pyrifera_M_contig78435.18435.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78435 4..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78435.18435.1

>prot_M-pyrifera_M_contig78435.18435.1 ID=prot_M-pyrifera_M_contig78435.18435.1|Name=mRNA_M-pyrifera_M_contig78435.18435.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=280bp
VPAASSYVQDRLDSIQNNIWESASDDAVIDDLDTELSGWESIIEAYTTLA
MPDVLEQSTAVNAALRGNPSTSELALARPVDDWLNSMLFDGDEGQRQAAF
DAYASRADIVAAELSDAIDLPLAGHSLLKWTLAELRNLRDNAESLVIADT
YLIENGSATIPQEDGVLANDIDQEYRNIIVDLAYELDPEYVAPQHGTLSL
NADGSFSYQADPGFVGIDRFSYRSTTIVTGSRDEAFSKPTSVVLLVEESS
SCSPADFTADGVLDIFDVLAFVNLFNAEDP
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mRNA from alignment at M-pyrifera_M_contig78435:4..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78435.18435.1 ID=mRNA_M-pyrifera_M_contig78435.18435.1|Name=mRNA_M-pyrifera_M_contig78435.18435.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig78435:4..843- (Macrocystis pyrifera P11B4 male)
GTCCCCGCTGCGTCCAGCTATGTGCAGGATCGTCTCGACAGTATTCAGAA CAATATCTGGGAGTCTGCATCAGACGATGCTGTGATAGACGATCTGGACA CAGAACTCTCGGGATGGGAATCGATCATCGAAGCGTACACGACACTCGCG ATGCCGGATGTGCTTGAGCAGAGCACGGCCGTGAACGCTGCGCTGCGAGG GAATCCCTCGACAAGCGAGCTGGCGCTCGCGCGTCCTGTCGATGATTGGC TCAACTCGATGCTGTTCGACGGCGATGAAGGACAGCGCCAAGCCGCGTTC GATGCGTATGCATCGCGTGCAGACATCGTTGCAGCAGAGCTGAGCGACGC GATCGATCTCCCGCTTGCGGGACACAGTCTGCTCAAGTGGACGCTCGCAG AGCTGCGAAATCTGCGAGACAACGCAGAGTCCCTCGTGATCGCTGATACA TATCTCATCGAGAATGGATCCGCAACGATCCCACAAGAAGACGGCGTGCT CGCAAACGACATCGATCAGGAGTATCGCAACATCATCGTCGATCTCGCGT ACGAGCTTGATCCCGAGTATGTCGCGCCGCAGCACGGCACGCTATCCCTC AACGCCGACGGCTCATTCAGCTATCAAGCTGATCCGGGATTCGTTGGGAT CGATCGTTTCAGCTATCGTTCAACGACTATTGTCACGGGATCACGGGACG AAGCGTTTTCAAAGCCGACAAGTGTTGTGCTTCTTGTTGAAGAATCAAGC AGCTGCAGTCCAGCAGATTTCACAGCCGACGGCGTGCTCGATATCTTCGA TGTGCTCGCGTTCGTGAATCTGTTCAATGCTGAGGATCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78435:4..843-

>mRNA_M-pyrifera_M_contig78435.18435.1 ID=mRNA_M-pyrifera_M_contig78435.18435.1|Name=mRNA_M-pyrifera_M_contig78435.18435.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1680bp|location=Sequence derived from alignment at M-pyrifera_M_contig78435:4..843- (Macrocystis pyrifera P11B4 male)
GTCCCCGCTGCGTCCAGCTATGTGCAGGATCGTCTCGACAGTATTCAGAA
CAATATCTGGGAGTCTGCATCAGACGATGCTGTGATAGACGATCTGGACA
CAGAACTCTCGGGATGGGAATCGATCATCGAAGCGTACACGACACTCGCG
ATGCCGGATGTGCTTGAGCAGAGCACGGCCGTGAACGCTGCGCTGCGAGG
GAATCCCTCGACAAGCGAGCTGGCGCTCGCGCGTCCTGTCGATGATTGGC
TCAACTCGATGCTGTTCGACGGCGATGAAGGACAGCGCCAAGCCGCGTTC
GATGCGTATGCATCGCGTGCAGACATCGTTGCAGCAGAGCTGAGCGACGC
GATCGATCTCCCGCTTGCGGGACACAGTCTGCTCAAGTGGACGCTCGCAG
AGCTGCGAAATCTGCGAGACAACGCAGAGTCCCTCGTGATCGCTGATACA
TATCTCATCGAGAATGGATCCGCAACGATCCCACAAGAAGACGGCGTGCT
CGCAAACGACATCGATCAGGAGTATCGCAACATCATCGTCGATCTCGCGT
ACGAGCTTGATCCCGAGTATGTCGCGCCGCAGCACGGCACGCTATCCCTC
AACGCCGACGGCTCATTCAGCTATCAAGCTGATCCGGGATTCGTTGGGAT
CGATCGTTTCAGCTATCGTTCAACGACTATTGTCACGGGATCACGGGACG
AAGCGTTTTCAAAGCCGACAAGTGTTGTGCTTCTTGTTGAAGAATCAAGC
AGCTGCAGTCCAGCAGATTTCACAGCCGACGGCGTGCTCGATATCTTCGA
TGTGCTCGCGTTCGTGAATCTGTTCAATGCTGAGGATCCGGTCCCCGCTG
CGTCCAGCTATGTGCAGGATCGTCTCGACAGTATTCAGAACAATATCTGG
GAGTCTGCATCAGACGATGCTGTGATAGACGATCTGGACACAGAACTCTC
GGGATGGGAATCGATCATCGAAGCGTACACGACACTCGCGATGCCGGATG
TGCTTGAGCAGAGCACGGCCGTGAACGCTGCGCTGCGAGGGAATCCCTCG
ACAAGCGAGCTGGCGCTCGCGCGTCCTGTCGATGATTGGCTCAACTCGAT
GCTGTTCGACGGCGATGAAGGACAGCGCCAAGCCGCGTTCGATGCGTATG
CATCGCGTGCAGACATCGTTGCAGCAGAGCTGAGCGACGCGATCGATCTC
CCGCTTGCGGGACACAGTCTGCTCAAGTGGACGCTCGCAGAGCTGCGAAA
TCTGCGAGACAACGCAGAGTCCCTCGTGATCGCTGATACATATCTCATCG
AGAATGGATCCGCAACGATCCCACAAGAAGACGGCGTGCTCGCAAACGAC
ATCGATCAGGAGTATCGCAACATCATCGTCGATCTCGCGTACGAGCTTGA
TCCCGAGTATGTCGCGCCGCAGCACGGCACGCTATCCCTCAACGCCGACG
GCTCATTCAGCTATCAAGCTGATCCGGGATTCGTTGGGATCGATCGTTTC
AGCTATCGTTCAACGACTATTGTCACGGGATCACGGGACGAAGCGTTTTC
AAAGCCGACAAGTGTTGTGCTTCTTGTTGAAGAATCAAGCAGCTGCAGTC
CAGCAGATTTCACAGCCGACGGCGTGCTCGATATCTTCGATGTGCTCGCG
TTCGTGAATCTGTTCAATGCTGAGGATCCG
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