mRNA_M-pyrifera_M_contig78431.18434.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78431.18434.1
Unique NamemRNA_M-pyrifera_M_contig78431.18434.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A5A8CU45_CAFRO (UMP-CMP kinase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CU45_CAFRO)

HSP 1 Score: 264 bits (675), Expect = 8.550e-77
Identity = 139/281 (49.47%), Postives = 197/281 (70.11%), Query Frame = 1
Query:   10 ELLMAVGPSRG-SSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRG--LEAVRFLGQWMLEHNPRNGRVEE 843
            +L + VGP  G ++A+DKAP S+NA+ S P   DG    A A  S   A R I  +F G LP+E+TLA++KPG ++     +++  R  GF++ A  R RL+ E+ E+FY EHRG+ FFERLT Y++SGPV+A+VLAK GAI +WRAL+GPT+  +A+ +AP+S+RAR+G+DGTRNA HGSD+  SA+REIRF+FP FA   LPS +    + + FV RR +A  ++P     +P TL++VLV+G+ ALA+A+P    LEA+R+LGQW+++HNPR G   E
Sbjct:  268 QLYLMVGPREGKATAKDKAPASINAVFS-PGADDGDGLAALAPRSAVDAARAIDAVFEGPLPVEHTLAVIKPGTADEHRADIMREIRAHGFTIAAQRRARLSKEQVESFYEEHRGKFFFERLTSYIASGPVIAMVLAKPGAIKAWRALMGPTNTFKARTDAPSSLRARFGIDGTRNATHGSDAPGSAAREIRFYFPDFAPHTLPSDD----EAKAFVERRQVAMVYNPVENNSVPATLRSVLVQGMTALAKARPSEDKLEALRWLGQWLVDHNPRRGTSAE 543          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A5A8CJQ2_CAFRO (UMP-CMP kinase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJQ2_CAFRO)

HSP 1 Score: 264 bits (675), Expect = 9.410e-77
Identity = 139/281 (49.47%), Postives = 197/281 (70.11%), Query Frame = 1
Query:   10 ELLMAVGPSRG-SSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRG--LEAVRFLGQWMLEHNPRNGRVEE 843
            +L + VGP  G ++A+DKAP S+NA+ S P   DG    A A  S   A R I  +F G LP+E+TLA++KPG ++     +++  R  GF++ A  R RL+ E+ E+FY EHRG+ FFERLT Y++SGPV+A+VLAK GAI +WRAL+GPT+  +A+ +AP+S+RAR+G+DGTRNA HGSD+  SA+REIRF+FP FA   LPS +    + + FV RR +A  ++P     +P TL++VLV+G+ ALA+A+P    LEA+R+LGQW+++HNPR G   E
Sbjct: 1335 QLYLMVGPREGKATAKDKAPASINAVFS-PGADDGDGLAALAPRSAVDAARAIDAVFEGPLPVEHTLAVIKPGTADEHRADIMREIRAHGFTIAAQRRARLSKEQVESFYEEHRGKFFFERLTSYIASGPVIAMVLAKPGAIKAWRALMGPTNTFKARTDAPSSLRARFGIDGTRNATHGSDAPGSAAREIRFYFPDFAPHTLPSDD----EAKAFVERRQVAMVYNPVENNSVPATLRSVLVQGMTALAKARPSEDKLEALRWLGQWLVDHNPRRGTSAE 1610          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A7S1CGX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGX1_9STRA)

HSP 1 Score: 251 bits (640), Expect = 3.020e-73
Identity = 140/273 (51.28%), Postives = 175/273 (64.10%), Query Frame = 1
Query:   28 GPSRGSSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRGLEAVRFLGQWMLEHNPRNGRVEEE 846
            GP+  S ARD AP S+ A        DG       S S E A R++   F   LP+E TLA++KPG ++A G A+   A   GF++ A  R  L+ E+A AFYAEHRG+PFF  L  YMSSGP  ALVLAK  AI  WRAL+GPT+   A++EAP S+RAR+G DGTRNA HGSDS ASA+REIRFFFP F   PL +G     D   F+ +R +A  F P     +P TL +VLVE L  L +AKP GL+AV++LG W+L +NPR GRV+EE
Sbjct:  319 GPTDTSKARDCAPASIRAQFG----TDGTKNAVHGSDSIESAAREVAFWFPAPLPVERTLALIKPGAADAHGTAIKLEAEAYGFTIAAHRRLTLSPEQAGAFYAEHRGKPFFNALVAYMSSGPTEALVLAKPAAIKCWRALMGPTNSDTARVEAPQSLRARFGEDGTRNATHGSDSPASAAREIRFFFPEFRAAPLRTG----ADARDFIVKREVATEFTPMGA--VPKTLNDVLVEALTELCKAKPTGLDAVKYLGNWLLANNPRAGRVQEE 581          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A482RC62_9ARCH (Nucleoside diphosphate kinase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RC62_9ARCH)

HSP 1 Score: 227 bits (579), Expect = 3.360e-68
Identity = 133/286 (46.50%), Postives = 174/286 (60.84%), Query Frame = 1
Query:    1 AVHELLMAVGPSRGSSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRG--LEAVRFLGQWMLEHNPRNGRVEEEDG 852
            AV   L   GP   S A+   P SL+A L   + + G        V+E+G    I  L+   LPL+ TL ++KPG ++    A++   R  GF+V A ARR LT+EE E FYAEH G+PFF  L  YMSSGPVVAL LAK   I  WR  +GPT+ A AK E P ++RAR+GVDGTRNA HGSDSVASA+RE+RF+FP   L+     +        ++    I+E +D  RG + P T + V+V+GL ALARAKP      A+R+LG+W+L+HNPR+G V  E G
Sbjct:  139 AVARCLALCGPPV-SVAKASVPASLHAKLGVDDARCGVLAAPSWQVAEDGV---IAKLWPTGLPLQKTLCVIKPGTAQTHYTAIMNDIRAAGFTVLAEARRSLTVEEVELFYAEHEGKPFFPGLVAYMSSGPVVALALAKPNGIKCWRQFMGPTNTAAAKREKPDTLRARYGVDGTRNATHGSDSVASAARELRFYFPSLLLDETVVRDAAVA----YIKNTVISETYDRTRGGMYPKTFEAVIVDGLTALARAKPASDAPSAIRWLGEWLLQHNPRHGSVAGEAG 416          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A7S0GSN3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GSN3_9EUKA)

HSP 1 Score: 186 bits (472), Expect = 6.150e-53
Identity = 110/248 (44.35%), Postives = 148/248 (59.68%), Query Frame = 1
Query:  127 FASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGM--SEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRGLEAVRFLGQWMLEHNPRNGRVEEEDGDAVG 864
            + S+S     RDI  LF    P++ TL M+KP    + AD  AV++   + GF V       L+   +  FYAEH+GR FFERLT +MSSGP+ A+VL K  AI SWR L+G TD  +A++  P  +RARWG+D TRN  HGSDS  SA+REI+FFFP      L        D E F T    A+   P      PT+L++VLVEGL  L R+KP GLEA+ +LG+W++E+NP    V++ + + VG
Sbjct:   46 YHSLSPFDGNRDIDCLFSDGFPIQRTLVMIKPNAYPNLADILAVIK---QNGFKVIVEESMTLSKARSTEFYAEHKGRSFFERLTTFMSSGPIHAMVLQKPAAIKSWRTLIGKTDVFKARIHNPNCLRARWGLDQTRNGFHGSDSEKSAAREIKFFFPTLTATTL-------ADPEVFAT----ADLSTPT-----PTSLKDVLVEGLTKLCRSKPVGLEAIEWLGRWLIENNPARPNVQDPEPNEVG 274          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A5J4Y7T1_9CHLO (Nucleoside-diphosphate kinase (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y7T1_9CHLO)

HSP 1 Score: 173 bits (439), Expect = 6.930e-50
Identity = 100/220 (45.45%), Postives = 135/220 (61.36%), Query Frame = 1
Query:  190 PLEYTLAMLKPGMSEADGRA--VVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKP--RGLEAVRFLGQWMLEHNPRNGRV 837
            P E T AM+KP    A G+A  + QL    GF++ A  + +LT + A+ FY+EH+G+ FFE L ++M+SGPV ALVLAK  AI  WR+L+GPT+   A+ E P S+RA +G DGT+NA HGSDS ASA+REIRFFFP  + E +  G G                       + + + LQ VLV+GL  LA+ KP    +EA+ FLGQW+L++NP   RV
Sbjct:   24 PFEKTYAMIKPDALRA-GKAEEICQLIEVHGFTIVAKQKLQLTQQRAQEFYSEHKGKSFFETLVNFMTSGPVYALVLAKQNAIKEWRSLMGPTNSNTARAEKPKSLRALYGTDGTQNATHGSDSPASAAREIRFFFPQLSQEAVVEGVG-----------------------QYMESMLQPVLVQGLTVLAKEKPCAHPVEALSFLGQWLLDNNPNKPRV 219          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A0G4FPF0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FPF0_9ALVE)

HSP 1 Score: 183 bits (465), Expect = 1.160e-48
Identity = 117/290 (40.34%), Postives = 165/290 (56.90%), Query Frame = 1
Query:   10 ELLMAVGPSRGSSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIGTLF--GGALPLEYTLAMLKPGMSEADGR----AVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRT--IAEAFDPA------RGRVLPTTLQNVLVEGLAALARAKPRGLEAVRFLGQWMLEHNPRNGRV 837
            +LLM  GP   + A+ KAP S+ AL      K+        S  EE A  ++ T F    A  ++ TLAM+KP   +A G+    A+ ++    GF++       L+ + AE FYAEHR +PFF  L  +MSSGP+VALVL++ GAI  WR L+GPTD   A+ + P+SVRA +G DGTRNA HGSDS  SA REI+FFFP   L+PLPS       +  FV R++  +++  D        +G  +  +LQ  L  GL AL + K  G++AV++L  W+ ++NP    V
Sbjct:  244 QLLM--GPEDAAVAKTKAPWSVRALFGSSALKN----AVHVSADEESAASELRTFFPEDAAGSVDRTLAMIKP---DAHGKGSSVAIEEMMEAAGFTIIKRREALLSRKRAEEFYAEHRSKPFFSNLVTFMSSGPIVALVLSRKGAIPVWRQLMGPTDSNAARAKRPSSVRALFGTDGTRNACHGSDSQMSAEREIQFFFPDIPLDPLPSDAA----LRDFVFRKSAKMSDKLDSLSQEDFNKGFKVELSLQAFLSRGLTALCKEKATGVQAVKWLADWLEQNNPNKAEV 520          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A1Y1HJ21_KLENI (Nucleoside-diphosphate kinase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJ21_KLENI)

HSP 1 Score: 169 bits (428), Expect = 1.700e-48
Identity = 98/218 (44.95%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  193 LEYTLAMLKP-GMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRG--LEAVRFLGQWMLEHNPRNGRV 837
            LE T AM+KP  +   +   ++Q     GF++   A+ +LT E AE FYAEH G+PFFE L  +MSSGPVVALVLAK  AI  WR L GPT+  RA+ EAP SVRA +G DG RNA HGSDS +SA REIRFFFP+  L+P+P     T  +++                      LQ +L + L ALA+ KP     EA+ +L  W+ ++NP   +V
Sbjct:    7 LERTYAMIKPDAVGAGNAERIMQQIEVNGFTIVQQAKLQLTREMAEEFYAEHAGKPFFEGLVTFMSSGPVVALVLAKVNAIREWRTLAGPTNSNRAREEAPESVRALYGTDGQRNAVHGSDSPSSAQREIRFFFPNLVLDPVPDSASATEYIQK---------------------NLQPILTKALTALAKEKPSSDPNEAIVWLAHWLQKNNPNAPQV 203          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A7S0R1P3_9CHLO (Nucleoside-diphosphate kinase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R1P3_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 7.840e-48
Identity = 96/217 (44.24%), Postives = 135/217 (62.21%), Query Frame = 1
Query:  193 LEYTLAMLKP-GMSEADGRAVVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRG--LEAVRFLGQWMLEHNPRNGR 834
            +E TLA++KP  +   D   ++Q    +GF++   +R +LT E A  FYAEH+G+PF++ L ++MSSGP++ALVLAK+ AI++WR+L+GPT+  +A+ EAP S+RA +G DGT NA HGSDSVASA REIRFFFP    +PLP   G     + FV R                  LQ  LV+ L  L + KP    LEA+ ++  W+L++NP   R
Sbjct:    7 VEKTLALIKPDAIRNGDTANILQKIELKGFTIVTRSRIQLTPERAGEFYAEHKGKPFYDNLVNFMSSGPLMALVLAKSDAILAWRSLMGPTNSLKAREEAPKSLRALYGTDGTCNATHGSDSVASACREIRFFFPKLVQDPLPDSTGA----KDFVARE-----------------LQPTLVKCLTTLCKVKPTANKLEAITWVANWLLDNNPNKPR 202          
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Match: A0A0G4J0W0_PLABS (Nucleoside diphosphate kinase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J0W0_PLABS)

HSP 1 Score: 174 bits (441), Expect = 1.900e-47
Identity = 103/239 (43.10%), Postives = 144/239 (60.25%), Query Frame = 1
Query:  109 GFDTVAFASVSEEGAKRDIGTLFGGALPLEYTLAMLKPGMSEADGRA-VVQLARERGFSVEATARRRLTLEEAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDPARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLPSGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKPRGLEAVRFLGQWMLEHNP 822
            G  TV   S +   A   I T +    PL+ TLA+LKP ++ A  RA ++Q   + GF+V A    ++TLE+ +AFYAEH G+PF++ L  +MSSGP+VAL L+K  A+ +WR LLGPT+   A+  AP S+RA++G DG RNAAHGSDS  SA+RE+RFFF                D+     R   A+  +   G+    +L  VL++GL AL R KP GL AV+ LG+W+ ++NP
Sbjct:  190 GDATVVSVSRTLAEADNAIQTYWPEGFPLQRTLALLKPDVTAAGHRAAILQAIVDAGFTVIAERCLQMTLEKTKAFYAEHAGKPFYDGLVEFMSSGPIVALALSKPNAVSAWRTLLGPTNSDTARQTAPNSIRAQFGTDGRRNAAHGSDSELSAARELRFFF---------------ADLPAASHRPVSAQEIE---GKQQEASLNQVLIKGLTALCRTKPVGLAAVKQLGEWLRDNNP 410          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78431.18434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CU45_CAFRO8.550e-7749.47UMP-CMP kinase n=1 Tax=Cafeteria roenbergensis Tax... [more]
A0A5A8CJQ2_CAFRO9.410e-7749.47UMP-CMP kinase n=3 Tax=Cafeteria roenbergensis Tax... [more]
A0A7S1CGX1_9STRA3.020e-7351.28Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482RC62_9ARCH3.360e-6846.50Nucleoside diphosphate kinase (Fragment) n=1 Tax=a... [more]
A0A7S0GSN3_9EUKA6.150e-5344.35Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A5J4Y7T1_9CHLO6.930e-5045.45Nucleoside-diphosphate kinase (Fragment) n=1 Tax=T... [more]
A0A0G4FPF0_9ALVE1.160e-4840.34Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1Y1HJ21_KLENI1.700e-4844.95Nucleoside-diphosphate kinase n=1 Tax=Klebsormidiu... [more]
A0A7S0R1P3_9CHLO7.840e-4844.24Nucleoside-diphosphate kinase n=1 Tax=Pyramimonas ... [more]
A0A0G4J0W0_PLABS1.900e-4743.10Nucleoside diphosphate kinase n=1 Tax=Plasmodiopho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78431contigM-pyrifera_M_contig78431:17..880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue9.3e-41
Seed eggNOG ortholog227086.JGI_V11_87358
Preferred nameRSP23
KEGG rclassRC00002
KEGG koko:K00940,ko:K19868,ko:K20790
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleoside diphosphate kinase
EggNOG OGsCOG0105@1,KOG0888@2759
EC2.7.4.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131
Exons1
Model size864
Cds size846
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.6079483-CDS-M-pyrifera_M_contig78431:16..8621622816686.6079483-CDS-M-pyrifera_M_contig78431:16..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78431 17..862 -
1692278119.5091927-CDS-M-pyrifera_M_contig78431:16..8621692278119.5091927-CDS-M-pyrifera_M_contig78431:16..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78431 17..862 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816686.6216528-UTR-M-pyrifera_M_contig78431:862..8801622816686.6216528-UTR-M-pyrifera_M_contig78431:862..880Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78431 863..880 -
1692278119.5231833-UTR-M-pyrifera_M_contig78431:862..8801692278119.5231833-UTR-M-pyrifera_M_contig78431:862..880Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78431 863..880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78431.18434.1prot_M-pyrifera_M_contig78431.18434.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78431 17..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78431.18434.1

>prot_M-pyrifera_M_contig78431.18434.1 ID=prot_M-pyrifera_M_contig78431.18434.1|Name=mRNA_M-pyrifera_M_contig78431.18434.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=282bp
MAVGPSRGSSARDKAPESLNALLSDPEKKDGFDTVAFASVSEEGAKRDIG
TLFGGALPLEYTLAMLKPGMSEADGRAVVQLARERGFSVEATARRRLTLE
EAEAFYAEHRGRPFFERLTHYMSSGPVVALVLAKAGAIVSWRALLGPTDP
ARAKLEAPASVRARWGVDGTRNAAHGSDSVASASREIRFFFPHFALEPLP
SGEGGTGDVERFVTRRTIAEAFDPARGRVLPTTLQNVLVEGLAALARAKP
RGLEAVRFLGQWMLEHNPRNGRVEEEDGDAVG
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mRNA from alignment at M-pyrifera_M_contig78431:17..880-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78431.18434.1 ID=mRNA_M-pyrifera_M_contig78431.18434.1|Name=mRNA_M-pyrifera_M_contig78431.18434.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig78431:17..880- (Macrocystis pyrifera P11B4 male)
GCTGTGCACGAGCTTCTGATGGCCGTGGGGCCTTCCCGAGGCTCTTCTGC GCGGGACAAAGCGCCCGAGAGTCTGAATGCGCTGCTGAGTGACCCGGAAA AGAAGGATGGGTTTGATACCGTGGCGTTTGCGTCGGTGAGCGAAGAAGGC GCGAAACGGGACATTGGGACGCTGTTCGGGGGTGCTTTGCCGCTGGAATA CACGCTGGCGATGCTCAAGCCCGGGATGAGCGAGGCGGATGGGAGGGCCG TGGTGCAGTTGGCGCGAGAACGCGGGTTTTCAGTCGAGGCCACGGCGCGT CGCCGGTTGACGCTGGAGGAAGCGGAGGCGTTTTATGCCGAGCATCGAGG ACGCCCCTTTTTCGAGCGGCTCACACACTACATGAGCAGTGGGCCCGTGG TGGCCCTGGTGTTGGCGAAAGCCGGGGCTATCGTTTCGTGGCGTGCTCTT TTGGGGCCCACAGACCCTGCTCGAGCCAAACTCGAAGCCCCCGCGTCTGT GCGTGCTCGGTGGGGCGTGGACGGCACCCGCAATGCCGCCCACGGGAGCG ACAGCGTCGCAAGTGCGAGTCGTGAAATTCGCTTCTTCTTCCCACACTTT GCGCTGGAACCCTTGCCTTCTGGAGAGGGTGGCACGGGGGACGTGGAGCG GTTCGTGACGCGGCGCACCATCGCAGAGGCCTTCGATCCCGCCAGGGGCC GCGTTCTGCCCACCACTCTCCAGAACGTTCTCGTGGAAGGCCTAGCAGCG CTTGCTCGGGCAAAACCCAGAGGCCTCGAGGCTGTGCGGTTCCTGGGCCA GTGGATGCTGGAGCACAACCCCAGGAACGGGCGCGTGGAGGAGGAGGACG GAGACGCGGTTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78431:17..880-

>mRNA_M-pyrifera_M_contig78431.18434.1 ID=mRNA_M-pyrifera_M_contig78431.18434.1|Name=mRNA_M-pyrifera_M_contig78431.18434.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1692bp|location=Sequence derived from alignment at M-pyrifera_M_contig78431:17..880- (Macrocystis pyrifera P11B4 male)
ATGGCCGTGGGGCCTTCCCGAGGCTCTTCTGCGCGGGACAAAGCGCCCGA
GAGTCTGAATGCGCTGCTGAGTGACCCGGAAAAGAAGGATGGGTTTGATA
CCGTGGCGTTTGCGTCGGTGAGCGAAGAAGGCGCGAAACGGGACATTGGG
ACGCTGTTCGGGGGTGCTTTGCCGCTGGAATACACGCTGGCGATGCTCAA
GCCCGGGATGAGCGAGGCGGATGGGAGGGCCGTGGTGCAGTTGGCGCGAG
AACGCGGGTTTTCAGTCGAGGCCACGGCGCGTCGCCGGTTGACGCTGGAG
GAAGCGGAGGCGTTTTATGCCGAGCATCGAGGACGCCCCTTTTTCGAGCG
GCTCACACACTACATGAGCAGTGGGCCCGTGGTGGCCCTGGTGTTGGCGA
AAGCCGGGGCTATCGTTTCGTGGCGTGCTCTTTTGGGGCCCACAGACCCT
GCTCGAGCCAAACTCGAAGCCCCCGCGTCTGTGCGTGCTCGGTGGGGCGT
GGACGGCACCCGCAATGCCGCCCACGGGAGCGACAGCGTCGCAAGTGCGA
GTCGTGAAATTCGCTTCTTCTTCCCACACTTTGCGCTGGAACCCTTGCCT
TCTGGAGAGGGTGGCACGGGGGACGTGGAGCGGTTCGTGACGCGGCGCAC
CATCGCAGAGGCCTTCGATCCCGCCAGGGGCCGCGTTCTGCCCACCACTC
TCCAGAACGTTCTCGTGGAAGGCCTAGCAGCGCTTGCTCGGGCAAAACCC
AGAGGCCTCGAGGCTGTGCGGTTCCTGGGCCAGTGGATGCTGGAGCACAA
CCCCAGGAACGGGCGCGTGGAGGAGGAGGACGGAGACGCGGTTGGGATGG
CCGTGGGGCCTTCCCGAGGCTCTTCTGCGCGGGACAAAGCGCCCGAGAGT
CTGAATGCGCTGCTGAGTGACCCGGAAAAGAAGGATGGGTTTGATACCGT
GGCGTTTGCGTCGGTGAGCGAAGAAGGCGCGAAACGGGACATTGGGACGC
TGTTCGGGGGTGCTTTGCCGCTGGAATACACGCTGGCGATGCTCAAGCCC
GGGATGAGCGAGGCGGATGGGAGGGCCGTGGTGCAGTTGGCGCGAGAACG
CGGGTTTTCAGTCGAGGCCACGGCGCGTCGCCGGTTGACGCTGGAGGAAG
CGGAGGCGTTTTATGCCGAGCATCGAGGACGCCCCTTTTTCGAGCGGCTC
ACACACTACATGAGCAGTGGGCCCGTGGTGGCCCTGGTGTTGGCGAAAGC
CGGGGCTATCGTTTCGTGGCGTGCTCTTTTGGGGCCCACAGACCCTGCTC
GAGCCAAACTCGAAGCCCCCGCGTCTGTGCGTGCTCGGTGGGGCGTGGAC
GGCACCCGCAATGCCGCCCACGGGAGCGACAGCGTCGCAAGTGCGAGTCG
TGAAATTCGCTTCTTCTTCCCACACTTTGCGCTGGAACCCTTGCCTTCTG
GAGAGGGTGGCACGGGGGACGTGGAGCGGTTCGTGACGCGGCGCACCATC
GCAGAGGCCTTCGATCCCGCCAGGGGCCGCGTTCTGCCCACCACTCTCCA
GAACGTTCTCGTGGAAGGCCTAGCAGCGCTTGCTCGGGCAAAACCCAGAG
GCCTCGAGGCTGTGCGGTTCCTGGGCCAGTGGATGCTGGAGCACAACCCC
AGGAACGGGCGCGTGGAGGAGGAGGACGGAGACGCGGTTGGG
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