mRNA_M-pyrifera_M_contig78386.18423.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78386.18423.1
Unique NamemRNA_M-pyrifera_M_contig78386.18423.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A022Q296_ERYGU (DAO domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q296_ERYGU)

HSP 1 Score: 95.5 bits (236), Expect = 1.110e-20
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRLPW-VDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            IYG P  E PG IK+  H G+    PEERT+ A P    E ++ W+EGR    VD + PV++++C+Y+ TPDE+F+I  L    G        E   +  GFSGHGFK++PVV R+ ++LV
Sbjct:  263 IYGTPSMEFPGLIKIPVHAGRAC-EPEERTWAAAPA-MVEALRGWIEGRFGGLVDGDRPVMTQSCMYSMTPDEDFVIDFLGGEFG--------EDAVVCGGFSGHGFKMSPVVGRIAAELV 373          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: UPI000C1D6B68 (probable sarcosine oxidase n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D6B68)

HSP 1 Score: 94.4 bits (233), Expect = 2.930e-20
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRLPW-VDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            +YG P  E PG IK+  H G+    P ERT+ A      + +K W+E R    VD   PV+S++C+Y+ TPDE+F+I  L    G +        V +A GFSGHGFK+AP+V R++++LV
Sbjct:  257 VYGTPSLEFPGLIKIGVHGGRPC-EPNERTWVAASPTVVDSLKKWIEARFQGLVDPSGPVMSQSCMYSMTPDEDFVIDFLGGDFGKE--------VVVAGGFSGHGFKMAPLVGRILAELV 368          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A484L4G9_9ASTE (DAO domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484L4G9_9ASTE)

HSP 1 Score: 94.0 bits (232), Expect = 4.080e-20
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRL-PWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLVHT 378
            +YG P  E PG IKV  H G+EI  PE RTF A        +K W+EGR    VD+ APV+S++CLY+ TPDE+++I  L    G        + V +A GFSGHGFK+ P+V R++  L+ +
Sbjct:  262 VYGTPSIEFPGLIKVGWHGGREI-EPERRTF-APLEGSLSLLKQWIEGRFGDRVDSSAPVMSQSCLYSMTPDEDYVIDFLGGEFG--------KDVVIAGGFSGHGFKMGPLVGRILVDLLRS 374          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A6I9TE33_SESIN (probable sarcosine oxidase n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TE33_SESIN)

HSP 1 Score: 93.6 bits (231), Expect = 6.030e-20
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    4 DVAIYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRL-PWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLVHT 378
            D  IYG P  E PG IK+  H G+    PE+RT+ A PT   E ++ W++GR    VD + PV++++C+Y+ TPDE+++I  L    G        E   +  GFSGHGFK+ PVV R+ ++LV +
Sbjct:  259 DPYIYGTPSLEFPGLIKIPMHAGRPC-DPEDRTWAA-PTAQVELLQDWIKGRFGDLVDTKKPVMTQSCMYSMTPDEDYVIDFLGGEFG--------EDAVVCGGFSGHGFKMGPVVGRIAAELVES 374          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A4D9B7G2_SALSN (Sarcosine oxidase / L-pipecolate oxidase n=4 Tax=Salvia TaxID=21880 RepID=A0A4D9B7G2_SALSN)

HSP 1 Score: 93.2 bits (230), Expect = 7.570e-20
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRL-PWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLVHT 378
            IYG P  E PG +K+  H G+    PE+RT+ A P    + ++ W++GR    +D   PVL+++C+Y+ TPDE+F+I  L    G   EDG      +  GFSGHGFK+APVV R+ + LV +
Sbjct:  259 IYGTPSLEFPGLVKIPVHAGRAC-DPEDRTWGAPPV-LVDALRAWIKGRFGDMIDVAKPVLTQSCMYSMTPDEDFVIDFLGGEFG---EDG-----VVCGGFSGHGFKMAPVVGRVAADLVES 371          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A2G9GFX8_9LAMI (FAD-dependent oxidoreductase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GFX8_9LAMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.060e-19
Identity = 49/123 (39.84%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRL-PWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLVHT 378
            IYG P  E PG IK+  H G+    PE+RT+ A P    EK++ W++GR    VD + PV++++C+Y+ TPD +++I  L    G        +   +  GFSGHGFK+APVV R+ +++V T
Sbjct:  262 IYGTPSLEFPGLIKIPVHGGRTC-EPEDRTWAA-PAALVEKLREWIKGRFGDLVDGDKPVMTQSCMYSVTPDRDYVIDFLGGEFG--------QDAVVCGGFSGHGFKMAPVVGRIAAEMVET 374          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A2R6R4R7_ACTCC (Sarcosine oxidase n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6R4R7_ACTCC)

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-19
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLE----GRLPWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            IYG P  E PG IK+  H G+    PE R ++A   D    VK W++    GR   VDA  PV+ ++CLY+ TPDE+F+I  L   LG +        V +A GFSGHGFK+APVV ++++ LV
Sbjct:  270 IYGTPSLEFPGLIKIPVHGGRGC-DPERRKWEAPDPDALASVKEWIQATFGGR---VDASRPVIVQSCLYSMTPDEDFVIDFLGGELGKE--------VVVAGGFSGHGFKMAPVVGQILADLV 381          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A226ETB5_FOLCA (Sarcosine oxidase n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226ETB5_FOLCA)

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-19
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    4 DVAIYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRLPWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            D  +YG P  E PG IK A H GKE+  P+ R F+ D T   E V P+L+     VD   PV +E+C+YT +PD++F+I  L         DG    + +  GFSGHGFKLAPVV  +++++V
Sbjct:  266 DPFLYGTPAHEFPGLIKCALHNGKEV-DPDTRDFEPDVTGLTEGVAPFLQNFFTRVDP-VPVRTESCMYTVSPDQDFVIDELPG------HDGR---LFIGCGFSGHGFKLAPVVGSLLAEMV 377          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: UPI001458FF5A (peroxisomal sarcosine oxidase-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FF5A)

HSP 1 Score: 91.7 bits (226), Expect = 2.230e-19
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRLPWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            IYGLP  E PG  K+  H G EI    +R  DAD T   + VK ++    P ++ + P + ETC+YT TPD +F++          +   DW+ + + AGFSGHGFKL+PVV +++S+LV
Sbjct:  253 IYGLPSLEYPGLYKMCLHSGPEIDP--DRRDDADSTWVIDNVKQFVAKHFPCLE-QHPAIIETCIYTNTPDHDFVL----------DRHRDWKNIVIGAGFSGHGFKLSPVVGKVLSELV 359          
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Match: A0A7J6V4R8_THATH (Sarcosine oxidase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V4R8_THATH)

HSP 1 Score: 91.7 bits (226), Expect = 2.910e-19
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   13 IYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWLEGRLPW-VDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVSLAAGFSGHGFKLAPVVARMISQLV 372
            IYG P  E PG +K+A H G +   P+ERT+ +  T   + V  W+EGR    VD+  PV +++C+Y+ TPDE+F+I  L    G          V +A GFSGHGFK+ PVV R+++ LV
Sbjct:  264 IYGTPSCEFPGLVKIAVHGGYQC-DPDERTWVS--TKIEDSVNSWIEGRFSGHVDSSKPVFTQSCMYSMTPDEDFVIDFLGGEFG--------NDVVIAGGFSGHGFKMGPVVGRILNDLV 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78386.18423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A022Q296_ERYGU1.110e-2042.98DAO domain-containing protein n=1 Tax=Erythranthe ... [more]
UPI000C1D6B682.930e-2041.32probable sarcosine oxidase n=1 Tax=Olea europaea v... [more]
A0A484L4G9_9ASTE4.080e-2043.90DAO domain-containing protein n=3 Tax=Cuscuta sect... [more]
A0A6I9TE33_SESIN6.030e-2040.48probable sarcosine oxidase n=1 Tax=Sesamum indicum... [more]
A0A4D9B7G2_SALSN7.570e-2041.46Sarcosine oxidase / L-pipecolate oxidase n=4 Tax=S... [more]
A0A2G9GFX8_9LAMI1.060e-1939.84FAD-dependent oxidoreductase n=1 Tax=Handroanthus ... [more]
A0A2R6R4R7_ACTCC1.700e-1943.55Sarcosine oxidase n=3 Tax=Actinidia TaxID=3624 Rep... [more]
A0A226ETB5_FOLCA2.000e-1942.28Sarcosine oxidase n=1 Tax=Folsomia candida TaxID=1... [more]
UPI001458FF5A2.230e-1940.83peroxisomal sarcosine oxidase-like n=1 Tax=Pecten ... [more]
A0A7J6V4R8_THATH2.910e-1942.15Sarcosine oxidase n=1 Tax=Thalictrum thalictroides... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78386contigM-pyrifera_M_contig78386:313..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.4
Seed ortholog evalue4.9e-18
Seed eggNOG ortholog4155.Migut.A00428.1.p
KEGG rclassRC00060,RC00083,RC00557
KEGG koko:K00306
KEGG ReactionR00610,R02204
KEGG Pathwayko00260,ko00310,ko01100,ko04146,map00260,map00310,map01100,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008115,GO:0008150,GO:0008152,GO:0016491,GO:0016645,GO:0016647,GO:0055114
EggNOG free text desc.FAD dependent oxidoreductase
EggNOG OGs37NAT@33090,3G7V3@35493,44GY1@71274,COG0665@1,KOG2820@2759
EC1.5.3.1,1.5.3.7
COG Functional cat.E
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.82688-CDS-M-pyrifera_M_contig78386:312..6901622816685.82688-CDS-M-pyrifera_M_contig78386:312..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78386 313..690 +
1692278119.041749-CDS-M-pyrifera_M_contig78386:312..6901692278119.041749-CDS-M-pyrifera_M_contig78386:312..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78386 313..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78386.18423.1prot_M-pyrifera_M_contig78386.18423.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78386 313..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78386.18423.1

>prot_M-pyrifera_M_contig78386.18423.1 ID=prot_M-pyrifera_M_contig78386.18423.1|Name=mRNA_M-pyrifera_M_contig78386.18423.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MDVAIYGLPCREIPGCIKVACHVGKEIPHPEERTFDADPTDYAEKVKPWL
EGRLPWVDAEAPVLSETCLYTTTPDENFLIGPLQNALGPKEEDGDWEGVS
LAAGFSGHGFKLAPVVARMISQLVHT
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mRNA from alignment at M-pyrifera_M_contig78386:313..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78386.18423.1 ID=mRNA_M-pyrifera_M_contig78386.18423.1|Name=mRNA_M-pyrifera_M_contig78386.18423.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig78386:313..690+ (Macrocystis pyrifera P11B4 male)
ATGGATGTTGCAATTTATGGGCTGCCATGTCGGGAAATCCCAGGATGTAT CAAGGTGGCGTGTCATGTTGGGAAGGAGATTCCACACCCTGAAGAAAGAA CGTTTGATGCAGATCCAACTGACTACGCAGAAAAAGTAAAACCATGGCTT GAAGGTAGGTTGCCTTGGGTCGATGCTGAAGCTCCAGTTCTCTCTGAAAC TTGTTTGTATACCACAACACCAGATGAAAACTTTCTCATTGGTCCATTGC AAAATGCCTTGGGCCCGAAAGAAGAAGATGGTGATTGGGAAGGCGTCTCT CTCGCAGCTGGATTCAGTGGCCATGGTTTCAAACTTGCCCCTGTCGTTGC CAGAATGATTTCTCAACTTGTCCATACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78386:313..690+

>mRNA_M-pyrifera_M_contig78386.18423.1 ID=mRNA_M-pyrifera_M_contig78386.18423.1|Name=mRNA_M-pyrifera_M_contig78386.18423.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig78386:313..690+ (Macrocystis pyrifera P11B4 male)
ATGGATGTTGCAATTTATGGGCTGCCATGTCGGGAAATCCCAGGATGTAT
CAAGGTGGCGTGTCATGTTGGGAAGGAGATTCCACACCCTGAAGAAAGAA
CGTTTGATGCAGATCCAACTGACTACGCAGAAAAAGTAAAACCATGGCTT
GAAGGTAGGTTGCCTTGGGTCGATGCTGAAGCTCCAGTTCTCTCTGAAAC
TTGTTTGTATACCACAACACCAGATGAAAACTTTCTCATTGGTCCATTGC
AAAATGCCTTGGGCCCGAAAGAAGAAGATGGTGATTGGGAAGGCGTCTCT
CTCGCAGCTGGATTCAGTGGCCATGGTTTCAAACTTGCCCCTGTCGTTGC
CAGAATGATTTCTCAACTTGTCCATACTATGGATGTTGCAATTTATGGGC
TGCCATGTCGGGAAATCCCAGGATGTATCAAGGTGGCGTGTCATGTTGGG
AAGGAGATTCCACACCCTGAAGAAAGAACGTTTGATGCAGATCCAACTGA
CTACGCAGAAAAAGTAAAACCATGGCTTGAAGGTAGGTTGCCTTGGGTCG
ATGCTGAAGCTCCAGTTCTCTCTGAAACTTGTTTGTATACCACAACACCA
GATGAAAACTTTCTCATTGGTCCATTGCAAAATGCCTTGGGCCCGAAAGA
AGAAGATGGTGATTGGGAAGGCGTCTCTCTCGCAGCTGGATTCAGTGGCC
ATGGTTTCAAACTTGCCCCTGTCGTTGCCAGAATGATTTCTCAACTTGTC
CATACT
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