mRNA_M-pyrifera_M_contig78367.18421.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78367.18421.1
Unique NamemRNA_M-pyrifera_M_contig78367.18421.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78367.18421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78367contigM-pyrifera_M_contig78367:187..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size323
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.7658093-CDS-M-pyrifera_M_contig78367:186..5071622816685.7658093-CDS-M-pyrifera_M_contig78367:186..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78367 187..507 +
1692278119.0115604-CDS-M-pyrifera_M_contig78367:186..5071692278119.0115604-CDS-M-pyrifera_M_contig78367:186..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78367 187..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78367.18421.1prot_M-pyrifera_M_contig78367.18421.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78367 187..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78367.18421.1

>prot_M-pyrifera_M_contig78367.18421.1 ID=prot_M-pyrifera_M_contig78367.18421.1|Name=mRNA_M-pyrifera_M_contig78367.18421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LLSSLTRRRFYPQRTSGQAVVTGVVPSPPRYMPSFLSRIGFSIPTTHRFS
SNAANSRSHVALAANHFLRKKSPHEYALGETRTHENDLSRHAGHLPSYYD
LGDIYT*
back to top

mRNA from alignment at M-pyrifera_M_contig78367:187..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78367.18421.1 ID=mRNA_M-pyrifera_M_contig78367.18421.1|Name=mRNA_M-pyrifera_M_contig78367.18421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig78367:187..507+ (Macrocystis pyrifera P11B4 male)
TTACTCTCAAGCTTAACTCGTAGGAGGTTTTACCCTCAGCGAACTTCTGG
GCAAGCCGTGGTCACAGGTGTCGTCCCTTCTCCCCCCCGGTACATGCCTT
CATTTCTATCGCGCATAGGGTTCAGCATTCCCACTACTCATCGATTTTCA
TCGAATGCTGCTAACTCGCGCTCTCATGTCGCGCTTGCCGCTAATCATTT
TTTACGCAAGAAAAGTCCCCACGAGTATGCACTCGGTGAGACTCGAACCC
ACGAAAATGATCTTAGTAGGCACGCGGGCCATCTACCAAGTTACTATGAT
CTTGGAGACATTTACACCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78367:187..507+

>mRNA_M-pyrifera_M_contig78367.18421.1 ID=mRNA_M-pyrifera_M_contig78367.18421.1|Name=mRNA_M-pyrifera_M_contig78367.18421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig78367:187..507+ (Macrocystis pyrifera P11B4 male)
TTACTCTCAAGCTTAACTCGTAGGAGGTTTTACCCTCAGCGAACTTCTGG
GCAAGCCGTGGTCACAGGTGTCGTCCCTTCTCCCCCCCGGTACATGCCTT
CATTTCTATCGCGCATAGGGTTCAGCATTCCCACTACTCATCGATTTTCA
TCGAATGCTGCTAACTCGCGCTCTCATGTCGCGCTTGCCGCTAATCATTT
TTTACGCAAGAAAAGTCCCCACGAGTATGCACTCGGTGAGACTCGAACCC
ACGAAAATGATCTTAGTAGGCACGCGGGCCATCTACCAAGTTACTATGAT
CTTGGAGACATTTACACCTAGTTACTCTCAAGCTTAACTCGTAGGAGGTT
TTACCCTCAGCGAACTTCTGGGCAAGCCGTGGTCACAGGTGTCGTCCCTT
CTCCCCCCCGGTACATGCCTTCATTTCTATCGCGCATAGGGTTCAGCATT
CCCACTACTCATCGATTTTCATCGAATGCTGCTAACTCGCGCTCTCATGT
CGCGCTTGCCGCTAATCATTTTTTACGCAAGAAAAGTCCCCACGAGTATG
CACTCGGTGAGACTCGAACCCACGAAAATGATCTTAGTAGGCACGCGGGC
CATCTACCAAGTTACTATGATCTTGGAGACATTTACACCTAG
back to top