mRNA_M-pyrifera_M_contig78341.18417.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78341.18417.1
Unique NamemRNA_M-pyrifera_M_contig78341.18417.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A5A8DXU2_CAFRO (Fe2OG dioxygenase domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXU2_CAFRO)

HSP 1 Score: 82.0 bits (201), Expect = 6.180e-16
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  103 RDCDRIVVDSEELARSLFDRAKEAIS----TFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDGFVTVD--KLRSQLTFMVYLN 384
            RDCDR  +++ E++  L+ RA+ A+S     F+ LE +  +     G  AAG + P  LN ++R+CRY PGGHFSPH DG+V +   + R+ LTFMVYLN
Sbjct:   83 RDCDRAELENPEISAELWRRARAAVSGEGSPFARLEFSVDDER-VFGGDAAGEWTPCGLNSRFRSCRYGPGGHFSPHGDGWVAIPGTETRTFLTFMVYLN 181          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: UPI001EE52A73 (uncharacterized protein LOC124275771 n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE52A73)

HSP 1 Score: 68.2 bits (165), Expect = 6.680e-11
Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 1
Query:   85 GYSRAHRDCDRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDG-FVTVDKLRSQLTFMVYLNAAEKG 399
            G    +R C R+   S+ELA  L+ R +  +S          + +        G ++P  LN  +R CRYLPGGHFSPH DG F +    RS  T M+YLN    G
Sbjct:   83 GVKEEYRSCHRVSFRSQELAELLWARLEPFLSNIVINGDPKQQHVQGIDFLLQGTWQPLGLNPVFRLCRYLPGGHFSPHFDGHFSSSTDQRSLQTLMLYLNGDFSG 188          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A6P0UMD8_9FLAO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Leptobacterium flavescens TaxID=472055 RepID=A0A6P0UMD8_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 1.710e-7
Identity = 37/115 (32.17%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   70 ALVHCGYSRAHRDCDRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDGFVTV-DKLRSQLTFMVYL---NAAEKGE 402
            A++H  Y   +R+ +R + D+ +L+  LF ++++ +         P+E +D+   +    +    +N + R CRYLPG  F  H DG   V DK++S+LTFM+YL   N+ E G+
Sbjct:   39 AIMH--YPSYYRNNERFLEDNRKLSEYLFKKSRQFL---------PNEIVDRNDGSV---WRISGINERVRFCRYLPGQFFGRHLDGVYHVSDKIKSKLTFMIYLSDPNSYEGGD 139          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: L1JDI1_GUITC (Fe2OG dioxygenase domain-containing protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDI1_GUITC)

HSP 1 Score: 57.4 bits (137), Expect = 3.870e-7
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  100 HRDCDRIVVDSEELARSLFDRAKEAIS---TFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDGFVTVD-KLRSQLTFMVYLNAAEKG 399
            +R+ D I + +E+ A+ L+ R K  +    T SP E   S  L+       G +    LN      RY PGGHFSPH DG+  +D   RS  + + YLN   KG
Sbjct:   39 YRNADTIEIINEKFAQDLWSRIKHLVVPCVTISPGESRWSRELE-------GTWVAVGLNPNMLFNRYHPGGHFSPHTDGYTIIDFNTRSMYSALFYLNDCPKG 135          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A7S0HTX1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HTX1_9CRYP)

HSP 1 Score: 56.6 bits (135), Expect = 4.970e-7
Identity = 35/101 (34.65%), Postives = 49/101 (48.51%), Query Frame = 1
Query:  100 HRDCDRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDGFVTVD-KLRSQLTFMVYLNAAEKG 399
            +R+ D I + +++ A+ L+ R K  I       VT S   ++      G +    LN      RY PGGHFSPH DG+  VD   RS  + + YLN   KG
Sbjct:  103 YRNADTIEIINDKFAQDLWSRIKHLIVP----SVTISPGQNRWSRELEGKWVAVGLNPNMLFNRYHPGGHFSPHTDGYTIVDFNTRSMYSALFYLNDCTKG 199          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A7S4NG46_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NG46_GUITH)

HSP 1 Score: 57.4 bits (137), Expect = 5.790e-7
Identity = 37/104 (35.58%), Postives = 51/104 (49.04%), Query Frame = 1
Query:  100 HRDCDRIVVDSEELARSLFDRAKEAIS---TFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDGFVTVD-KLRSQLTFMVYLNAAEKG 399
            +R+ D I + +E+ A+ L+ R K  +    T SP E   S  L+       G +    LN      RY PGGHFSPH DG+  +D   RS  + + YLN   KG
Sbjct:  223 YRNADTIEIINEKFAQDLWSRIKHLVVPCVTISPGESRWSRELE-------GTWVAVGLNPNMLFNRYHPGGHFSPHTDGYTIIDFNTRSMYSALFYLNDCPKG 319          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A8J6RXD6_9CYAN (2OG-Fe(II) oxygenase n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RXD6_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 2.710e-5
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  103 RDCDRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDG-FVTVDKLRSQLTFMVYLNAAEKGEE 405
            R+ DR+++D+EELA SL+ R    + T+ P        +D   A          LN + R  RY PG  F+PH DG +   +   S+LTFM+YLN   +G E
Sbjct:   53 RNNDRVILDNEELAASLWCR----VETYVP-------RIDNWCAIG--------LNERLRFYRYDPGQRFAPHHDGGYWRTNGDHSRLTFMIYLNEDFEGGE 135          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A517L4V4_9PEZI (P4Hc domain-containing protein n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517L4V4_9PEZI)

HSP 1 Score: 51.6 bits (122), Expect = 5.370e-5
Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 1
Query:  103 RDCDRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAG------FYEPRALNYKWRACRYLPGGHFSPHCDG-FVTVDKLRSQLTFMVYLN 384
            R C RI+ D+EELAR L++R +  +   S +E        +   T  G       +    LN + R  +Y+ G +F  HCDG +   +K RS  T  +YLN
Sbjct:  128 RKCGRIIWDTEELARRLWERVEPLVPELSKIE-------GKASVTGWGPVKWEEVWRCVGLNERLRLLKYVGGEYFKAHCDGMYEAPNKERSYYTLHLYLN 221          
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Match: A0A1L7XVZ4_9HELO (P4Hc domain-containing protein n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7XVZ4_9HELO)

HSP 1 Score: 50.4 bits (119), Expect = 8.040e-5
Identity = 36/93 (38.71%), Postives = 44/93 (47.31%), Query Frame = 1
Query:  112 DRIVVDSEELARSLFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLPGGHFSPHCDG--FVTVDKLRSQLTFMVYLN 384
            DR   D   LA  L+ R +   S F        +  D  G      +E   LN ++R CRYLPGG FSPH DG  F +VD    Q T  +YLN
Sbjct:   59 DREAFDDPALAELLWSRLE---SFFMGNGEMSGKVKDDDGCE----WEVEGLNERFRLCRYLPGGKFSPHFDGQRFASVDSCSFQ-TVNIYLN 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78341.18417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A5A8DXU2_CAFRO6.180e-1645.00Fe2OG dioxygenase domain-containing protein n=5 Ta... [more]
UPI001EE52A736.680e-1136.79uncharacterized protein LOC124275771 n=2 Tax=Halio... [more]
A0A6P0UMD8_9FLAO1.710e-732.17Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
L1JDI1_GUITC3.870e-735.58Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S0HTX1_9CRYP4.970e-734.65Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4NG46_GUITH5.790e-735.58Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A8J6RXD6_9CYAN2.710e-536.272OG-Fe(II) oxygenase n=4 Tax=Cyanobacteria TaxID=1... [more]
A0A517L4V4_9PEZI5.370e-532.67P4Hc domain-containing protein n=1 Tax=Venturia ef... [more]
A0A1L7XVZ4_9HELO8.040e-538.71P4Hc domain-containing protein n=1 Tax=Phialocepha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78341contigM-pyrifera_M_contig78341:223..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog220664.PFL_2349
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs1QXCN@1224,1T37V@1236,COG2319@1,COG2319@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816685.4486585-CDS-M-pyrifera_M_contig78341:222..6271622816685.4486585-CDS-M-pyrifera_M_contig78341:222..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78341 223..627 +
1692278118.821616-CDS-M-pyrifera_M_contig78341:222..6271692278118.821616-CDS-M-pyrifera_M_contig78341:222..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78341 223..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78341.18417.1prot_M-pyrifera_M_contig78341.18417.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78341 223..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78341.18417.1

>prot_M-pyrifera_M_contig78341.18417.1 ID=prot_M-pyrifera_M_contig78341.18417.1|Name=mRNA_M-pyrifera_M_contig78341.18417.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
LLARNFLPARYCSVLREAMLRDSALVHCGYSRAHRDCDRIVVDSEELARS
LFDRAKEAISTFSPLEVTPSEALDQCGATAAGFYEPRALNYKWRACRYLP
GGHFSPHCDGFVTVDKLRSQLTFMVYLNAAEKGEE
back to top

mRNA from alignment at M-pyrifera_M_contig78341:223..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78341.18417.1 ID=mRNA_M-pyrifera_M_contig78341.18417.1|Name=mRNA_M-pyrifera_M_contig78341.18417.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig78341:223..627+ (Macrocystis pyrifera P11B4 male)
CTCTTGGCACGAAACTTCCTCCCTGCCCGCTATTGCAGTGTGCTTCGTGA GGCTATGTTGCGTGATTCAGCACTGGTGCATTGCGGGTATTCCCGAGCGC ACCGAGATTGTGACAGAATCGTGGTGGATAGCGAGGAATTGGCGCGTTCC CTCTTTGATCGCGCAAAAGAGGCCATTTCCACCTTTTCTCCGCTGGAAGT GACCCCTTCCGAGGCTCTGGACCAGTGTGGGGCGACAGCTGCGGGGTTCT ATGAGCCCAGAGCCCTCAACTACAAGTGGAGGGCCTGTCGCTACCTCCCA GGAGGACACTTCTCACCACACTGCGACGGCTTCGTGACCGTTGACAAACT GCGGTCCCAGCTCACGTTCATGGTCTACCTCAATGCGGCCGAGAAAGGAG AAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78341:223..627+

>mRNA_M-pyrifera_M_contig78341.18417.1 ID=mRNA_M-pyrifera_M_contig78341.18417.1|Name=mRNA_M-pyrifera_M_contig78341.18417.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig78341:223..627+ (Macrocystis pyrifera P11B4 male)
CTCTTGGCACGAAACTTCCTCCCTGCCCGCTATTGCAGTGTGCTTCGTGA
GGCTATGTTGCGTGATTCAGCACTGGTGCATTGCGGGTATTCCCGAGCGC
ACCGAGATTGTGACAGAATCGTGGTGGATAGCGAGGAATTGGCGCGTTCC
CTCTTTGATCGCGCAAAAGAGGCCATTTCCACCTTTTCTCCGCTGGAAGT
GACCCCTTCCGAGGCTCTGGACCAGTGTGGGGCGACAGCTGCGGGGTTCT
ATGAGCCCAGAGCCCTCAACTACAAGTGGAGGGCCTGTCGCTACCTCCCA
GGAGGACACTTCTCACCACACTGCGACGGCTTCGTGACCGTTGACAAACT
GCGGTCCCAGCTCACGTTCATGGTCTACCTCAATGCGGCCGAGAAAGGAG
AAGAACTCTTGGCACGAAACTTCCTCCCTGCCCGCTATTGCAGTGTGCTT
CGTGAGGCTATGTTGCGTGATTCAGCACTGGTGCATTGCGGGTATTCCCG
AGCGCACCGAGATTGTGACAGAATCGTGGTGGATAGCGAGGAATTGGCGC
GTTCCCTCTTTGATCGCGCAAAAGAGGCCATTTCCACCTTTTCTCCGCTG
GAAGTGACCCCTTCCGAGGCTCTGGACCAGTGTGGGGCGACAGCTGCGGG
GTTCTATGAGCCCAGAGCCCTCAACTACAAGTGGAGGGCCTGTCGCTACC
TCCCAGGAGGACACTTCTCACCACACTGCGACGGCTTCGTGACCGTTGAC
AAACTGCGGTCCCAGCTCACGTTCATGGTCTACCTCAATGCGGCCGAGAA
AGGAGAAGAA
back to top