mRNA_M-pyrifera_M_contig78300.18409.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78300.18409.1
Unique NamemRNA_M-pyrifera_M_contig78300.18409.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A397BYW1_9STRA (Homeobox domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BYW1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.250e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 IQILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGPS---RHSRKL 177
            ++IL+DWM S +H  HPYP   ++  L  T  ++++Q+T WFTNARKR+W P     HSR+L
Sbjct:  108 VKILKDWMLSTEHIKHPYPTDDDKKKLLETTGINMKQLTNWFTNARKRIWKPMMRREHSRQL 169
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A397DZI4_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DZI4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.930e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 IQILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGPS---RHSRKL 177
            ++IL+DWM S +H  HPYP   ++  L  T  ++++Q+T WFTNARKR+W P     HSR+L
Sbjct:  108 VKILKDWMLSTEHIKHPYPTDDDKKKLLETTGINMKQLTNWFTNARKRIWKPMMRREHSRQL 169
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A2P4YHL4_9STRA (Homeobox domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHL4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.470e-11
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:   45 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 94
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A8J5MG20_9STRA (Homeobox_KN domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MG20_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.640e-11
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  143 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 192
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: W4GVM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVM9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-10
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 IQILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGPS---RHSRKL 177
            ++IL+DWM S +H  HPYP   ++  L  T  ++++Q+T WFTNARKR+W P     HSR+L
Sbjct:  108 VKILKDWMLSTEHIKHPYPTDDDKKKLLETTGINMKQLTNWFTNARKRIWKPMMRREHSRQL 169
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: D0P1Y7_PHYIT (Homeobox domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=D0P1Y7_PHYIT)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  143 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 192
[Close]
BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A421FJD3_9STRA (Homeobox domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FJD3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.340e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  111 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 160
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BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A2P4XQT1_9STRA (Homeobox domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQT1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.380e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  124 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A225VPZ8_9STRA (Homebox and aldo/keto reductase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VPZ8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.380e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  130 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Match: A0A6A3QGY5_9STRA (Homeobox domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3QGY5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-10
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 ILQDWMFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGP 156
            +L+ WMFS +H+ HPYP   E+ +LA+ A + V+Q++ WFTNARKR+W P
Sbjct:  135 VLKAWMFSPEHFAHPYPSEEEKEELANEAGIEVKQLSNWFTNARKRLWQP 184
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78300.18409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397BYW1_9STRA3.250e-1146.77Homeobox domain-containing protein n=5 Tax=Aphanom... [more]
A0A397DZI4_9STRA5.930e-1146.77Uncharacterized protein (Fragment) n=3 Tax=Aphanom... [more]
A0A2P4YHL4_9STRA6.470e-1152.00Homeobox domain-containing protein n=1 Tax=Phytoph... [more]
A0A8J5MG20_9STRA7.640e-1152.00Homeobox_KN domain-containing protein n=1 Tax=Phyt... [more]
W4GVM9_9STRA1.030e-1046.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
D0P1Y7_PHYIT1.250e-1052.00Homeobox domain-containing protein n=13 Tax=Phytop... [more]
A0A421FJD3_9STRA1.340e-1052.00Homeobox domain-containing protein n=2 Tax=Phytoph... [more]
A0A2P4XQT1_9STRA1.380e-1052.00Homeobox domain-containing protein n=1 Tax=Phytoph... [more]
A0A225VPZ8_9STRA1.380e-1052.00Homebox and aldo/keto reductase n=1 Tax=Phytophtho... [more]
A0A6A3QGY5_9STRA1.420e-1052.00Homeobox domain-containing protein n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78300contigM-pyrifera_M_contig78300:716..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.971959-UTR-M-pyrifera_M_contig78300:715..7361622816684.971959-UTR-M-pyrifera_M_contig78300:715..736Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78300 716..736 +
1692278118.5507367-UTR-M-pyrifera_M_contig78300:715..7361692278118.5507367-UTR-M-pyrifera_M_contig78300:715..736Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78300 716..736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.9840493-CDS-M-pyrifera_M_contig78300:736..8921622816684.9840493-CDS-M-pyrifera_M_contig78300:736..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78300 737..892 +
1692278118.561205-CDS-M-pyrifera_M_contig78300:736..8921692278118.561205-CDS-M-pyrifera_M_contig78300:736..892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78300 737..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78300.18409.1prot_M-pyrifera_M_contig78300.18409.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78300 737..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78300.18409.1

>prot_M-pyrifera_M_contig78300.18409.1 ID=prot_M-pyrifera_M_contig78300.18409.1|Name=mRNA_M-pyrifera_M_contig78300.18409.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MFSDDHYHHPYPIPWEQLDLAHTAQMSVRQVTFWFTNARKRMWGPSRHSR
KL
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mRNA from alignment at M-pyrifera_M_contig78300:716..892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78300.18409.1 ID=mRNA_M-pyrifera_M_contig78300.18409.1|Name=mRNA_M-pyrifera_M_contig78300.18409.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig78300:716..892+ (Macrocystis pyrifera P11B4 male)
ATCCAGATCCTTCAAGACTGGATGTTTTCTGACGATCACTACCATCACCC
TTATCCTATTCCATGGGAACAATTAGATCTTGCACATACTGCTCAAATGA
GTGTAAGACAAGTTACGTTTTGGTTTACCAATGCGCGTAAGCGTATGTGG
GGTCCATCTCGTCATTCTCGGAAGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78300:716..892+

>mRNA_M-pyrifera_M_contig78300.18409.1 ID=mRNA_M-pyrifera_M_contig78300.18409.1|Name=mRNA_M-pyrifera_M_contig78300.18409.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig78300:716..892+ (Macrocystis pyrifera P11B4 male)
ATGTTTTCTGACGATCACTACCATCACCCTTATCCTATTCCATGGGAACA
ATTAGATCTTGCACATACTGCTCAAATGAGTGTAAGACAAGTTACGTTTT
GGTTTACCAATGCGCGTAAGCGTATGTGGGGTCCATCTCGTCATTCTCGG
AAGCTTATGTTTTCTGACGATCACTACCATCACCCTTATCCTATTCCATG
GGAACAATTAGATCTTGCACATACTGCTCAAATGAGTGTAAGACAAGTTA
CGTTTTGGTTTACCAATGCGCGTAAGCGTATGTGGGGTCCATCTCGTCAT
TCTCGGAAGCTT
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