mRNA_M-pyrifera_M_contig78280.18400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78280.18400.1
Unique NamemRNA_M-pyrifera_M_contig78280.18400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: E3W0I4_PRUPE (DNA-directed RNA polymerase subunit beta' n=194 Tax=Mesangiospermae TaxID=1437183 RepID=E3W0I4_PRUPE)

HSP 1 Score: 670 bits (1729), Expect = 4.580e-238
Identity = 329/330 (99.70%), Postives = 330/330 (100.00%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 990
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 621
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A649ZAY5_9ROSA (DNA-directed RNA polymerase subunit beta' n=3 Tax=Maleae TaxID=721813 RepID=A0A649ZAY5_9ROSA)

HSP 1 Score: 656 bits (1692), Expect = 1.780e-232
Identity = 324/330 (98.18%), Postives = 327/330 (99.09%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 990
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSP+IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY+YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPSIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYEYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 619
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A650B3D5_AROAR (DNA-directed RNA polymerase subunit beta' n=2 Tax=Aronia TaxID=193297 RepID=A0A650B3D5_AROAR)

HSP 1 Score: 655 bits (1691), Expect = 2.520e-232
Identity = 325/330 (98.48%), Postives = 326/330 (98.79%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 990
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYWYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 619
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A649ZF30_9ROSA (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dichotomanthes tristaniicarpa TaxID=193303 RepID=A0A649ZF30_9ROSA)

HSP 1 Score: 655 bits (1691), Expect = 2.520e-232
Identity = 324/330 (98.18%), Postives = 327/330 (99.09%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRET 990
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNY+YTKE  PFFCNSYDAIGAYRQKRINLDSPLWLRW+LDQRVITSRET
Sbjct:  292 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYEYTKE--PFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVITSRET 619
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A6M4SQL3_9MAGN (DNA-directed RNA polymerase subunit n=3 Tax=cellular organisms TaxID=131567 RepID=A0A6M4SQL3_9MAGN)

HSP 1 Score: 647 bits (1668), Expect = 6.900e-231
Identity = 317/329 (96.35%), Postives = 321/329 (97.57%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLT GNRRGICANRYNPCNRRNYQ KRIDDNNY+YTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI SRE
Sbjct:  152 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTGGNRRGICANRYNPCNRRNYQTKRIDDNNYEYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRE 480
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A5Q0UU43_9FABA (DNA-directed RNA polymerase subunit (Fragment) n=3 Tax=Fabaceae TaxID=3803 RepID=A0A5Q0UU43_9FABA)

HSP 1 Score: 642 bits (1657), Expect = 1.270e-230
Identity = 315/329 (95.74%), Postives = 323/329 (98.18%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLI++HFASNIGVAKSKIREKEP+VW+IL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNR GICANRYNPCNRRNY+N+RI DNNYKYTKEKEPFFCNSYDAIGAYRQKRIN DSPLWLRWRLDQ VI+SRE
Sbjct:   68 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIKKHFASNIGVAKSKIREKEPIVWQILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRGGICANRYNPCNRRNYKNERIYDNNYKYTKEKEPFFCNSYDAIGAYRQKRINFDSPLWLRWRLDQCVISSRE 396
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A2S1P4A6_HAMMO (DNA-directed RNA polymerase subunit beta' n=20 Tax=cellular organisms TaxID=131567 RepID=A0A2S1P4A6_HAMMO)

HSP 1 Score: 651 bits (1680), Expect = 1.350e-230
Identity = 319/329 (96.96%), Postives = 323/329 (98.18%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNY+YTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI SRE
Sbjct:  292 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYEYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRE 620
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A7U0KR86_9MAGN (DNA-directed RNA polymerase subunit beta' n=1 Tax=Loropetalum chinense var. rubrum TaxID=79783 RepID=A0A7U0KR86_9MAGN)

HSP 1 Score: 650 bits (1677), Expect = 3.610e-230
Identity = 317/329 (96.35%), Postives = 323/329 (98.18%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE+AIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNYKYTK+KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+I SRE
Sbjct:  290 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRELAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASRE 618
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: A0A2R3TVN9_9MAGN (DNA-directed RNA polymerase subunit beta' n=1 Tax=Loropetalum subcordatum TaxID=66699 RepID=A0A2R3TVN9_9MAGN)

HSP 1 Score: 649 bits (1675), Expect = 7.260e-230
Identity = 317/329 (96.35%), Postives = 322/329 (97.87%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTL D+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQH ASNIGVAKSKIREKEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQP+LVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQ KRIDDNNYKYTK+KEPFFCNSYDAIGAYRQKRIN DSPLWLRWRLDQR+I SRE
Sbjct:  290 DINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQTKRIDDNNYKYTKKKEPFFCNSYDAIGAYRQKRINFDSPLWLRWRLDQRIIASRE 618
[Close]
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Match: E5KU87_CORLA (DNA-directed RNA polymerase subunit beta' n=1 Tax=Corynocarpus laevigatus TaxID=4312 RepID=E5KU87_CORLA)

HSP 1 Score: 649 bits (1674), Expect = 1.260e-229
Identity = 317/329 (96.35%), Postives = 326/329 (99.09%), Query Frame = 1 
Query:    1 DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRE 987
            DINELYRRVIYRNNTLID+LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIR+KEP+VWEIL EVMQGHPVLLNRAPTLHRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR+N+QN++IDDN+YKYTKEKEPFFCNSYDAIGAYRQKRI+LDSPLWLRWRLDQRVI SRE
Sbjct:  298 DINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIRQKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIDDNDYKYTKEKEPFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVIASRE 626
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78280.18400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E3W0I4_PRUPE4.580e-23899.70DNA-directed RNA polymerase subunit beta' n=194 Ta... [more]
A0A649ZAY5_9ROSA1.780e-23298.18DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
A0A650B3D5_AROAR2.520e-23298.48DNA-directed RNA polymerase subunit beta' n=2 Tax=... [more]
A0A649ZF30_9ROSA2.520e-23298.18DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A6M4SQL3_9MAGN6.900e-23196.35DNA-directed RNA polymerase subunit n=3 Tax=cellul... [more]
A0A5Q0UU43_9FABA1.270e-23095.74DNA-directed RNA polymerase subunit (Fragment) n=3... [more]
A0A2S1P4A6_HAMMO1.350e-23096.96DNA-directed RNA polymerase subunit beta' n=20 Tax... [more]
A0A7U0KR86_9MAGN3.610e-23096.35DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A2R3TVN9_9MAGN7.260e-23096.35DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
E5KU87_CORLA1.260e-22996.35DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78280contigM-pyrifera_M_contig78280:1..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score630.2
Seed ortholog evalue5.5e-178
Seed eggNOG ortholog3702.ATCG00180.1
Preferred namerpoC1
KEGG rclassRC02795
KEGG koko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005737,GO:0009295,GO:0009507,GO:0009536,GO:0030880,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0055029,GO:0061695,GO:0070013,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed RNA polymerase
EggNOG OGs2QPYA@2759,37HVM@33090,3GFWY@35493,COG0086@1
EC2.7.7.6
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size990
Cds size990
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.3597445-CDS-M-pyrifera_M_contig78280:0..9901622816684.3597445-CDS-M-pyrifera_M_contig78280:0..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78280 1..990 -
1692278118.1268373-CDS-M-pyrifera_M_contig78280:0..9901692278118.1268373-CDS-M-pyrifera_M_contig78280:0..990Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78280 1..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78280.18400.1prot_M-pyrifera_M_contig78280.18400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78280 1..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78280.18400.1

>prot_M-pyrifera_M_contig78280.18400.1 ID=prot_M-pyrifera_M_contig78280.18400.1|Name=mRNA_M-pyrifera_M_contig78280.18400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=330bp
DINELYRRVIYRNNTLIDILTTSRSTPGELVMCQEKLVQEAVDTLLDNGI
RGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL
SLHRCGLPREIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEI
LHEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGHAICLHPLVCKGFNADF
DGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKEKEPFFCNSYDAI
GAYRQKRINLDSPLWLRWRLDQRVITSRET
back to top

mRNA from alignment at M-pyrifera_M_contig78280:1..990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78280.18400.1 ID=mRNA_M-pyrifera_M_contig78280.18400.1|Name=mRNA_M-pyrifera_M_contig78280.18400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig78280:1..990- (Macrocystis pyrifera P11B4 male)
GATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTAT
CGATATCTTAACAACAAGTAGATCTACGCCAGGGGAATTAGTAATGTGTC
AGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATC
CGCGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTC
AGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCA
AACGGGTCGATTATTCGGGGCGTTCTGTCATTGTCGTAGGCCCTTCACTT
TCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCA
GACATTTGTAATTCGCGGTTTAATTAGACAACATTTTGCTTCGAATATAG
GAGTTGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATA
CTTCATGAAGTTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTAC
TCTGCATAGATTAGGCATACAGGCGTTCCAACCCATTTTAGTAGAAGGAC
ATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTT
GATGGTGATCAAATGGCTGTTCATGTACCCTTATCTTTGGAGGCTCAAGC
GGAGGCGCGTTTACTTATGTTTTCTCATATGAACCTCTTATCTCCAGCTA
TTGGAGATCCTATTTCCGTACCAACTCAAGATATGCTTATTGGGCTCTAT
GTATTAACGAGTGGAAATCGTCGAGGTATTTGTGCAAATAGGTATAATCC
ATGTAATCGCAGAAATTATCAAAATAAAAGAATTGACGATAATAACTATA
AATATACGAAAGAAAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATT
GGAGCTTATCGGCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCG
GTGGCGACTAGATCAACGCGTTATTACTTCAAGAGAAACT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig78280:1..990-

>mRNA_M-pyrifera_M_contig78280.18400.1 ID=mRNA_M-pyrifera_M_contig78280.18400.1|Name=mRNA_M-pyrifera_M_contig78280.18400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1980bp|location=Sequence derived from alignment at M-pyrifera_M_contig78280:1..990- (Macrocystis pyrifera P11B4 male)
GATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTAT
CGATATCTTAACAACAAGTAGATCTACGCCAGGGGAATTAGTAATGTGTC
AGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATC
CGCGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTC
AGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCA
AACGGGTCGATTATTCGGGGCGTTCTGTCATTGTCGTAGGCCCTTCACTT
TCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCA
GACATTTGTAATTCGCGGTTTAATTAGACAACATTTTGCTTCGAATATAG
GAGTTGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATA
CTTCATGAAGTTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTAC
TCTGCATAGATTAGGCATACAGGCGTTCCAACCCATTTTAGTAGAAGGAC
ATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTT
GATGGTGATCAAATGGCTGTTCATGTACCCTTATCTTTGGAGGCTCAAGC
GGAGGCGCGTTTACTTATGTTTTCTCATATGAACCTCTTATCTCCAGCTA
TTGGAGATCCTATTTCCGTACCAACTCAAGATATGCTTATTGGGCTCTAT
GTATTAACGAGTGGAAATCGTCGAGGTATTTGTGCAAATAGGTATAATCC
ATGTAATCGCAGAAATTATCAAAATAAAAGAATTGACGATAATAACTATA
AATATACGAAAGAAAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATT
GGAGCTTATCGGCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCG
GTGGCGACTAGATCAACGCGTTATTACTTCAAGAGAAACTGATATTAATG
AACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATATCTTA
ACAACAAGTAGATCTACGCCAGGGGAATTAGTAATGTGTCAGGAGAAATT
GGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATCCGCGGACAAC
CAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATT
GAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGA
TTATTCGGGGCGTTCTGTCATTGTCGTAGGCCCTTCACTTTCATTACATC
GATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTA
ATTCGCGGTTTAATTAGACAACATTTTGCTTCGAATATAGGAGTTGCTAA
GAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATACTTCATGAAG
TTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTACTCTGCATAGA
TTAGGCATACAGGCGTTCCAACCCATTTTAGTAGAAGGACATGCTATTTG
TTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGTGATC
AAATGGCTGTTCATGTACCCTTATCTTTGGAGGCTCAAGCGGAGGCGCGT
TTACTTATGTTTTCTCATATGAACCTCTTATCTCCAGCTATTGGAGATCC
TATTTCCGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGA
GTGGAAATCGTCGAGGTATTTGTGCAAATAGGTATAATCCATGTAATCGC
AGAAATTATCAAAATAAAAGAATTGACGATAATAACTATAAATATACGAA
AGAAAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATC
GGCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCGGTGGCGACTA
GATCAACGCGTTATTACTTCAAGAGAAACT
back to top