mRNA_M-pyrifera_M_contig78247.18397.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78247.18397.1
Unique NamemRNA_M-pyrifera_M_contig78247.18397.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A7S1CFM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFM2_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.990e-33
Identity = 70/149 (46.98%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLH  RD ++AA V+DSPFADLR+L  E+V     + G  +P W VSA +  +++++L+   LD   LKPI +    FVPALF  G+ D+ I P HS A+  AY G+  L  +P   HN  RP  F  +A  FLR +MR+
Sbjct:  183 GRSMGAATALLHGHRDPSIAAFVLDSPFADLRQLALEMVEMGKAEAGYRVPGWVVSAAIKMVRSSVLKKAALDIDKLKPIENVGTCFVPALFAAGEDDSFISPAHSQAIHDAYAGDKNLVLLPGD-HNSPRPRFFHDSAAIFLRTAMRV 330          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A5A8CZM0_CAFRO (Hydrolase_4 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZM0_CAFRO)

HSP 1 Score: 128 bits (321), Expect = 4.930e-32
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAAT+LLH PRD  +  +++DSPFADL++LI+E+V     Q GV +P+W    V+  +Q ++ + TG+D   LKP A+A    V AL   G  DT + PHH++A+   Y G  +L  +  Q HN  RP  FQ  A  FLR+++ +
Sbjct:  199 GRSMGAATSLLHCPRDPLIDGMILDSPFADLQQLIEEIVERFRSQAGVTVPSWVTGTVIRMVQNSVFKRTGMDILRLKPAATAYLCHVRALITAGRDDTFVAPHHATAIYEEYRGAKELVLLDGQDHNSQRPRWFQDRAGIFLRQALHI 347          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A5A8DL89_CAFRO (Rab-GAP TBC domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DL89_CAFRO)

HSP 1 Score: 128 bits (321), Expect = 1.880e-31
Identity = 64/149 (42.95%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAAT+LLH PRD  +  +++DSPFADL++LI+E+V     Q GV +P+W    V+  +Q ++ + TG+D   LKP A+A    V AL   G  DT + PHH++A+   Y G  +L  +  Q HN  RP  FQ  A  FLR+++ +
Sbjct:  929 GRSMGAATSLLHCPRDPLIDGMILDSPFADLQQLIEEIVERFRSQAGVTVPSWVTGTVIRMVQNSVFKRTGMDILRLKPAATAYLCHVRALITAGRDDTFVAPHHATAIYEEYRGAKELVLLDGQDHNSQRPRWFQDRAGIFLRQALHI 1077          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A5A8EKF1_CAFRO (Hydrolase_4 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EKF1_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 2.540e-31
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAAT+LLH PRD  +  +++DSPFADL++LI+E+V     Q GV  P+W    V+  +Q ++ + TG+D   LKP A+A    V AL   G  DT + PHH++A+   Y G  +L  +  Q HN  RP  FQ  A  FLR+++ +
Sbjct:  199 GRSMGAATSLLHCPRDPLIDGMILDSPFADLQQLIEEIVERFRSQAGVTAPSWVTGTVIRMVQNSVFKRTGMDILRLKPAATAYLCHVRALITAGRDDTFVAPHHATAIYEEYRGAKELVLLDGQDHNSQRPRWFQDRAGIFLRQALHI 347          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: H3H0I5_PHYRM (RanBP2-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0I5_PHYRM)

HSP 1 Score: 117 bits (292), Expect = 1.060e-27
Identity = 66/149 (44.30%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLHA RD ++A +VVDS FA L +L++EVV +  RQ G+ LP + V  VL  +++++ +    D   L PI  AP  FVPALF   + D+ I PHHS  +  AYGG+  L  + D  HN  RP     +A  FL+ ++++
Sbjct:  250 GRSMGAATALLHADRDPSIAGIVVDSAFASLEQLVEEVV-ERGRQEGLTLPGFLVKIVLKFIRSSVKKRAHFDLRRLAPIDHAPVSFVPALFVAAEHDSFIAPHHSDQIYAAYGGDKNLVKV-DGDHNSSRPQFLLDSAAIFLQTALQV 396          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: M4BGZ5_HYAAE (RanBP2-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGZ5_HYAAE)

HSP 1 Score: 117 bits (292), Expect = 1.070e-27
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLHA RD ++A +VVDS FA L +L++EVV D  RQ G+ LP + V  VL  ++ ++ +    D   L PI  AP  FVPALF   + D+ I PHHS  +   YGG+  L  + D  HN  RP     +A  FL+ ++++
Sbjct:  243 GRSMGAATALLHADRDPSIAGIVVDSAFASLEQLVEEVV-DRGRQEGLTLPGFLVKIVLKFIRLSVKKRAHFDLQQLAPIDHAPVSFVPALFVAAEHDSFITPHHSDQIFAVYGGDKNLVKV-DGDHNSSRPQFLLDSAAIFLQTALQV 389          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A0W8DHP2_PHYNI (RanBP2-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DHP2_PHYNI)

HSP 1 Score: 115 bits (288), Expect = 3.240e-27
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLHA RD ++A +VVDS FA L +L++EVV +  RQ G+ LP + V  VL  +++++ +    +   L PI  AP  FVPALF   + D+ I PHHS  +  AYGG+  L  + D  HN  RP     +A  FL+ ++++
Sbjct:  221 GRSMGAATALLHADRDPSIAGIVVDSAFASLEQLVEEVV-ERGRQEGLTLPGFLVKIVLKFIRSSVKKRAHFNLRRLAPIDHAPVSFVPALFVAAEHDSFIAPHHSDQIFAAYGGDKNLVKV-DGDHNSSRPQFLLDSAAIFLQTALQV 367          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: V9DZ57_PHYPR (RanBP2-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=V9DZ57_PHYPR)

HSP 1 Score: 115 bits (288), Expect = 3.750e-27
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLHA RD ++A +VVDS FA L +L++EVV +  RQ G+ LP + V  VL  +++++ +    +   L PI  AP  FVPALF   + D+ I PHHS  +  AYGG+  L  + D  HN  RP     +A  FL+ ++++
Sbjct:  255 GRSMGAATALLHADRDPSIAGIVVDSAFASLEQLVEEVV-ERGRQEGLTLPGFLVKIVLKFIRSSVKKRAHFNLRRLAPIDHAPVSFVPALFVAAEHDSFIAPHHSDQIFAAYGGDKNLVKV-DGDHNSSRPQFLLDSAAIFLQTALQV 401          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A3M6VAZ2_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAZ2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.940e-27
Identity = 64/149 (42.95%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL 447
            GRSMGAATALLHA RD ++A +VVDS FA L +L++EVV D  RQ G+ LP + V  VL  +++++ +    D   + PI  A   FVP LF   + D+ I PHHS  +  AYGG+  L  + D  HN  RP     +A  FL+ ++++
Sbjct:  255 GRSMGAATALLHADRDPSIAGIVVDSAFASLGQLVEEVV-DRGRQEGLTLPGFLVKIVLKFIRSSVKKRAHFDLQRISPIDHAAMSFVPVLFVAAEHDSFIAPHHSDQIFAAYGGDKNLVKV-DGDHNSSRPQFLLDSAAIFLQTALQV 401          
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Match: A0A7S0IS30_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IS30_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 4.340e-27
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 GRSMGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQL-GVP-LPAWGVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRPHHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLR 432
            GRSMGA++A+LH  RDA++A +V+DSPFA L ++  E+V D + +  G+P  P++ V   L  + +++    G D   L+PI  AP  F+PALF  G +D+L+RPHH+  +  AY G+  L S     HNE+RP  F  +A  FL+
Sbjct:   34 GRSMGASSAVLHGARDASLAGMVLDSPFASLEQVALELVADAATRFEGLPNFPSFMVRGALRVVASSVKSRAGFDLYKLRPIDFAPTCFIPALFGAGQEDSLVRPHHAKQIADAYAGDKNLVSFGGD-HNELRPGFFIDSACIFLK 178          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78247.18397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CFM2_9STRA1.990e-3346.98Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CZM0_CAFRO4.930e-3242.95Hydrolase_4 domain-containing protein n=2 Tax=Cafe... [more]
A0A5A8DL89_CAFRO1.880e-3142.95Rab-GAP TBC domain-containing protein n=2 Tax=Cafe... [more]
A0A5A8EKF1_CAFRO2.540e-3142.95Hydrolase_4 domain-containing protein n=2 Tax=Cafe... [more]
H3H0I5_PHYRM1.060e-2744.30RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]
M4BGZ5_HYAAE1.070e-2744.30RanBP2-type domain-containing protein n=1 Tax=Hyal... [more]
A0A0W8DHP2_PHYNI3.240e-2743.62RanBP2-type domain-containing protein n=4 Tax=Phyt... [more]
V9DZ57_PHYPR3.750e-2743.62RanBP2-type domain-containing protein n=11 Tax=Phy... [more]
A0A3M6VAZ2_9STRA3.940e-2742.95Hydrolase_4 domain-containing protein n=1 Tax=Pero... [more]
A0A7S0IS30_9EUKA4.340e-2741.78Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78247contigM-pyrifera_M_contig78247:439..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue8.5e-22
Seed eggNOG ortholog164328.Phyra83672
Hectar predicted targeting categoryother localisation
EggNOG free text desc.X-Pro dipeptidyl-peptidase (S15 family)
EggNOG OGs3QCXU@4776,COG1073@1,KOG1552@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1832504-CDS-M-pyrifera_M_contig78247:438..8761622816684.1832504-CDS-M-pyrifera_M_contig78247:438..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78247 439..876 -
1692278118.0151677-CDS-M-pyrifera_M_contig78247:438..8761692278118.0151677-CDS-M-pyrifera_M_contig78247:438..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78247 439..876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1968994-UTR-M-pyrifera_M_contig78247:876..8851622816684.1968994-UTR-M-pyrifera_M_contig78247:876..885Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78247 877..885 -
1692278118.0268838-UTR-M-pyrifera_M_contig78247:876..8851692278118.0268838-UTR-M-pyrifera_M_contig78247:876..885Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig78247 877..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78247.18397.1prot_M-pyrifera_M_contig78247.18397.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78247 439..876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78247.18397.1

>prot_M-pyrifera_M_contig78247.18397.1 ID=prot_M-pyrifera_M_contig78247.18397.1|Name=mRNA_M-pyrifera_M_contig78247.18397.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MGAATALLHAPRDATVAALVVDSPFADLRELIQEVVLDVSRQLGVPLPAW
GVSAVLTALQATMLRSTGLDFSGLKPIASAPRMFVPALFCVGDKDTLIRP
HHSSALMHAYGGETQLFSIPDQGHNEMRPATFQGTAKEFLRRSMRL
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mRNA from alignment at M-pyrifera_M_contig78247:439..885-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78247.18397.1 ID=mRNA_M-pyrifera_M_contig78247.18397.1|Name=mRNA_M-pyrifera_M_contig78247.18397.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig78247:439..885- (Macrocystis pyrifera P11B4 male)
GGTCGATCGATGGGAGCTGCGACGGCATTGCTCCATGCTCCCCGTGACGC TACGGTTGCAGCCTTGGTGGTGGATTCTCCGTTTGCGGATTTGCGTGAGT TGATCCAGGAGGTTGTGCTGGACGTGTCTCGGCAGCTGGGGGTGCCTTTG CCTGCGTGGGGCGTGAGTGCAGTGTTGACTGCATTGCAGGCGACGATGCT TCGATCGACTGGTCTCGATTTCTCGGGGCTGAAACCAATCGCTTCTGCGC CTCGAATGTTTGTGCCTGCCCTCTTTTGTGTCGGCGACAAGGACACCCTC ATTCGGCCACACCACTCCTCCGCCCTCATGCACGCCTACGGGGGAGAAAC ACAGCTCTTCTCCATCCCAGACCAGGGACACAACGAAATGCGACCCGCCA CATTCCAAGGCACAGCCAAGGAATTCCTGAGGAGATCCATGCGCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78247:439..885-

>mRNA_M-pyrifera_M_contig78247.18397.1 ID=mRNA_M-pyrifera_M_contig78247.18397.1|Name=mRNA_M-pyrifera_M_contig78247.18397.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig78247:439..885- (Macrocystis pyrifera P11B4 male)
ATGGGAGCTGCGACGGCATTGCTCCATGCTCCCCGTGACGCTACGGTTGC
AGCCTTGGTGGTGGATTCTCCGTTTGCGGATTTGCGTGAGTTGATCCAGG
AGGTTGTGCTGGACGTGTCTCGGCAGCTGGGGGTGCCTTTGCCTGCGTGG
GGCGTGAGTGCAGTGTTGACTGCATTGCAGGCGACGATGCTTCGATCGAC
TGGTCTCGATTTCTCGGGGCTGAAACCAATCGCTTCTGCGCCTCGAATGT
TTGTGCCTGCCCTCTTTTGTGTCGGCGACAAGGACACCCTCATTCGGCCA
CACCACTCCTCCGCCCTCATGCACGCCTACGGGGGAGAAACACAGCTCTT
CTCCATCCCAGACCAGGGACACAACGAAATGCGACCCGCCACATTCCAAG
GCACAGCCAAGGAATTCCTGAGGAGATCCATGCGCCTCATGGGAGCTGCG
ACGGCATTGCTCCATGCTCCCCGTGACGCTACGGTTGCAGCCTTGGTGGT
GGATTCTCCGTTTGCGGATTTGCGTGAGTTGATCCAGGAGGTTGTGCTGG
ACGTGTCTCGGCAGCTGGGGGTGCCTTTGCCTGCGTGGGGCGTGAGTGCA
GTGTTGACTGCATTGCAGGCGACGATGCTTCGATCGACTGGTCTCGATTT
CTCGGGGCTGAAACCAATCGCTTCTGCGCCTCGAATGTTTGTGCCTGCCC
TCTTTTGTGTCGGCGACAAGGACACCCTCATTCGGCCACACCACTCCTCC
GCCCTCATGCACGCCTACGGGGGAGAAACACAGCTCTTCTCCATCCCAGA
CCAGGGACACAACGAAATGCGACCCGCCACATTCCAAGGCACAGCCAAGG
AATTCCTGAGGAGATCCATGCGCCTC
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