mRNA_M-pyrifera_M_contig779.18320.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig779.18320.1
Unique NamemRNA_M-pyrifera_M_contig779.18320.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig779.18320.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.540e-25
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 2 
Query:    5 KQREISAGLKDTYDRLVKSGMMQVGVNPDGTPEEMPDMDEMARSYDAEKFMFKDGDFSEEELSKYA---------ASVMSADGDGAPGSGIDIDDADVRAAFGLD 292
            +QRE++AGL+ TY++LVK+GM+Q   NPDGTP +MPDM+EMAR+Y+ E FMFK+GDFSEEELSKY           + ++ D D  PG  ID+DD   R+AFGLD
Sbjct:  493 RQREVAAGLRRTYEKLVKTGMVQE-TNPDGTPAKMPDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXXXXAGLALDDD-LPGGDIDLDDPATRSAFGLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig779.18320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI5.540e-2556.19CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig779contigM-pyrifera_M_contig779:1136..3793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog2880.D7FUA9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-03_000920.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size390
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig779.18320.1prot_M-pyrifera_M_contig779.18320.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig779 1200..3698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.1065667-UTR-M-pyrifera_M_contig779:1135..11991622816680.1065667-UTR-M-pyrifera_M_contig779:1135..1199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 1136..1199 +
1692278115.642337-UTR-M-pyrifera_M_contig779:1135..11991692278115.642337-UTR-M-pyrifera_M_contig779:1135..1199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 1136..1199 +
1622816680.1399672-UTR-M-pyrifera_M_contig779:3698..37931622816680.1399672-UTR-M-pyrifera_M_contig779:3698..3793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 3699..3793 +
1692278115.6803322-UTR-M-pyrifera_M_contig779:3698..37931692278115.6803322-UTR-M-pyrifera_M_contig779:3698..3793Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig779 3699..3793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816680.1181493-CDS-M-pyrifera_M_contig779:1199..12591622816680.1181493-CDS-M-pyrifera_M_contig779:1199..1259Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 1200..1259 +
1692278115.6556962-CDS-M-pyrifera_M_contig779:1199..12591692278115.6556962-CDS-M-pyrifera_M_contig779:1199..1259Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 1200..1259 +
1622816680.129133-CDS-M-pyrifera_M_contig779:3527..36981622816680.129133-CDS-M-pyrifera_M_contig779:3527..3698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 3528..3698 +
1692278115.6696236-CDS-M-pyrifera_M_contig779:3527..36981692278115.6696236-CDS-M-pyrifera_M_contig779:3527..3698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig779 3528..3698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig779.18320.1

>prot_M-pyrifera_M_contig779.18320.1 ID=prot_M-pyrifera_M_contig779.18320.1|Name=mRNA_M-pyrifera_M_contig779.18320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MMQVGVNPDGTPEEMPDMDEMARSYDAEKFMFKDGDFSEEELSKYAASVM
SADGDGAPGSGIDIDDADVRAAFGLD*
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mRNA from alignment at M-pyrifera_M_contig779:1136..3793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig779.18320.1 ID=mRNA_M-pyrifera_M_contig779.18320.1|Name=mRNA_M-pyrifera_M_contig779.18320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2658bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:1136..3793+ (Macrocystis pyrifera P11B4 male)
GGCGAAGCAGCGTGAGATTTCGGCTGGACTGAAGGACACGTACGACAGGC
TCGTCAAGTCGGGAATGATGCAGGTCGGGGTTAACCCGGACGGAACGCCC
GAGGAGATGCCGGACATGGATGAGGTGCGTGTGTTGTTGTAGTTGTTGGT
GTTGTTGATGTTGGTCTTGACGTCGACGTTGGCGTTGTTGGTGTTGGTGT
GTTGCTGCTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTGATGTCGTGTC
TTGTCTTGTCTTGTCTTGTCATGCCATGTCTTGTTTTATCTTGTCGTGTC
TTTTCCTGTCAGGTCATGTCATATCCTGCCTTGTCTTGTCTTGTCTTATC
TTGTCTTGTCTCACCTAAATGTTTGACGATCACGCGTGCTTGCCTTCCAG
GGGTAGCGACTATCATGATGCTCACTGGAGGAGCTCCATGCCTCGCCCAA
AAACTACACCTGCTATTTTCAGAAAAACTATTGATATAAGTGCAACCCGA
TGGGCAATCCCAAAACCTACTCATCTATTATTAATAGGTAGTATCACGAA
TATTATATTACGGGGGACCATAGTATATAGGACCTACGGTACACACAAAA
ACTTACATATTTACCTATTTTNNNNNNNNNNATTTTTACTAACAATATTT
GGTCCTATTTACTATGCCCCCCCAGTCACATTGGTCTATTCCGGGGGGCT
ATAGTTAACAGGACCTATGGCATACATAAAAACCTACATATTTAGGTATT
TTACTAACAATATTTGGTCCTGTTTACTATGGTCCTCCGTAATAGTGGTA
TTCCTACGATATTAAGGTTAGGGAGGCAAAGCGGTTGTTGATGTTAATAG
TACTCAAGTCAGAAAATAACTTTGGGCTAAAAAATGGTACACACCCCTGT
CGCCTGTGGCAGCACACGTACGTCTGATCTCATTTGATGGTCTGATGTTT
GATATTCTAACATCAGATGAGCTGACGTTGACGACTTGGTAGTTGATGAA
GATCTGATAGCTTGGCATCTGATACTTGTATCTGATATCTGATATCATGT
GTAGCAGGTACAATACTTGGCGGTGAAAGGGTAGTATTAATCGCGCGTAT
TCCATTGAGTATGCGCAGTGAAGGGGAGTTGGTCGGATGAGGTTGGTGGC
TGTTCGACGAATTGTGTCAGCTTTTTCAACCCTGATTGAATAGTGCCCTG
CGCATCTGCGCATTATCGGAACGCGAATGCAAACAGTGGCAGCAGCAATA
ATGATGATGATGATGAGGATGATGATGATGATATCATCATCAATAATAAT
AACGGTAATCATCATCATATTAAAAATCATAATAATAATAATAATCCTAT
TAATCATAATCATGAAATTATAATAATAGCAACAATAATAATAATAACAA
TAAGAAGAACAAGAACAAGATTAATAACTCAAACTAGTCTCACACCTTGG
ACCTGTAGCTCTGCCTCTGCTTCACTGCGCTGATACGTGTAGGTTGCGGC
TACGTACCAGACAAGGTGTGTTTACCAAGGGCTACGATTCATGCTGCCAT
GAATCACCGCAGTCATCTGATTGGCTTGAACTTCTTGCGTACGTACAAAT
CTCACATTCTCTCATTCTTACGACAATATTCTGCATTAACAATAAGAAGA
AGAAGAATAAAAAAAAAAATAAGAACAAGAACAATAATATTATAAATAAT
GTTAATAATATTATTTACAAGAATAATATGAATAGTAATAATAACAAGAA
TAATAATAGTAATAATAATAATAATAATAATAATAATAATAATAATAGTA
ATAGTAGTAGTAGTGTCTGTTGATCTTGTAAAGGTGTTACCTACCGAGCT
ATACGGGTAAAAGACCGATCGATTACCCAGCCCAGGGTACATATTCTTAT
ACCACTCTCCCCCCCTCTGAACGGCGGGATCTTTGGGGCGTCAGAACCGT
ATACGTCTGTACGCTGACCCGCCCGCTTCGTTTCATTACCTGGGGAACCA
GAGGGAGATGTGTTCTTTTTTTATAGGCAAGCGCAAGCGTTTCTGTAAAA
GAAACGTTCGAAGTGAGGTTCGAACCCGTGTCCTGCCGACGACGCCAAAT
GTGAAGGTGTTACCTACTGTGCTATAGGGGTAAAAGACCGATCGATCACC
CAGCCCAGGGTAATCCTTATAACAATTTGATGTGTAGTAAGCTCGATACA
AAGATACGACGTACCCGATAGTTGAGTATCTTGATGTCAATGTCAACCGT
CATTTATTGACGGATGTTTTTTATCCGGTGTGCAGGCATTGTGCATTGGA
TATATGATGTGTGATGTTAGATGTGTGATGTGCGATCCCTTACCATTTGA
TGCTGCTGCTGCCGCGTCACTCATGCCGCGACGTGCTCGCAGATGGCGAG
GTCTTACGACGCGGAAAAGTTCATGTTCAAGGACGGAGACTTCTCAGAAG
AGGAGTTGAGCAAGTACGCGGCGTCTGTCATGTCGGCCGACGGCGACGGT
GCGCCGGGCTCGGGCATCGACATCGACGATGCGGACGTCCGCGCAGCCTT
TGGTCTAGACTGACATTTTTTTTACGACCACGCTACTATTCCAAAGCTAA
GTAAAGTGTGGAGACCACGTCCTGGGACCAATACGCCTACTCGAACAGTC
GAAACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig779:1136..3793+

>mRNA_M-pyrifera_M_contig779.18320.1 ID=mRNA_M-pyrifera_M_contig779.18320.1|Name=mRNA_M-pyrifera_M_contig779.18320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig779:1136..3793+ (Macrocystis pyrifera P11B4 male)
ATGATGCAGGTCGGGGTTAACCCGGACGGAACGCCCGAGGAGATGCCGGA
CATGGATGAGATGATGCAGGTCGGGGTTAACCCGGACGGAACGCCCGAGG
AGATGCCGGACATGGATGAGATGGCGAGGTCTTACGACGCGGAAAAGTTC
ATGTTCAAGGACGGAGACTTCTCAGAAGAGGAGTTGAGCAAGTACGCGGC
GTCTGTCATGTCGGCCGACGGCGACGGTGCGCCGGGCTCGGGCATCGACA
TCGACGATGCGGACGTCCGCGCAGCCTTTGGTCTAGACTGAATGGCGAGG
TCTTACGACGCGGAAAAGTTCATGTTCAAGGACGGAGACTTCTCAGAAGA
GGAGTTGAGCAAGTACGCGGCGTCTGTCATGTCGGCCGACGGCGACGGTG
CGCCGGGCTCGGGCATCGACATCGACGATGCGGACGTCCGCGCAGCCTTT
GGTCTAGACTGA
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