mRNA_M-pyrifera_M_contig77794.18300.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77794.18300.1
Unique NamemRNA_M-pyrifera_M_contig77794.18300.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8E3K0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3K0_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 3.100e-23
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   19 PYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWRQVDDVAEAMEPEAGL 312
            P  + L GL QG  Y+V VSA N  G G+PS   SETPRA+P AP     ELV  S +SLR  W +P D+NGA+++HF VQWR+V D AE ++PEA L
Sbjct: 6356 PLAITLRGLTQGASYTVRVSARNGQGYGVPSVLASETPRAVPSAPVAPVTELVAGSGSSLRAYWSLPVDDNGAELSHFHVQWRRVGD-AEPLDPEASL 6452          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8EDT7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDT7_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 3.100e-23
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   19 PYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWRQVDDVAEAMEPEAGL 312
            P  + L GL QG  Y+V VSA N  G G+PS   SETPRA+P AP     ELV  S +SLR  W +P D+NGA+++HF VQWR+V D AE ++PEA L
Sbjct: 6436 PLAITLRGLTQGASYTVRVSARNGQGYGVPSVLASETPRAVPSAPVAPVTELVAGSGSSLRAYWSLPVDDNGAELSHFHVQWRRVGD-AEPLDPEASL 6532          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8DUD1_CAFRO (Uncharacterized protein n=11 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUD1_CAFRO)

HSP 1 Score: 102 bits (255), Expect = 3.100e-23
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   19 PYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWRQVDDVAEAMEPEAGL 312
            P  + L GL QG  Y+V VSA N  G G+PS   SETPRA+P AP     ELV  S +SLR  W +P D+NGA+++HF VQWR+V D AE ++PEA L
Sbjct: 6436 PLAITLRGLTQGASYTVRVSARNGQGYGVPSVLASETPRAVPSAPVAPVTELVAGSGSSLRAYWSLPVDDNGAELSHFHVQWRRVGD-AEPLDPEASL 6532          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8DYP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYP9_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 LDVVDGPYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQW 264
            LDV +G Y   + GL  G  Y+V V+A+NALG+G+P+A +   P A P+ PR V LE V  S + L V W++PA +NGA +T +RV+W
Sbjct: 5367 LDVPNGRYEHTIEGLVPGVRYAVWVTALNALGQGLPAAPMFNVPHAAPEQPRLVELERVPGSSSKLAVFWQVPASDNGAPITMYRVEW 5454          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8CWJ7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWJ7_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 LDVVDGPYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQW 264
            LDV +G Y   + GL  G  Y+V V+A+NALG+G+P+A +   P A P+ PR V LE V  S + L V W++PA +NGA +T +RV+W
Sbjct: 5527 LDVPNGRYEHTIEGLVPGVRYAVWVTALNALGQGLPAAPMFNVPHAAPEQPRLVELERVPGSSSKLAVFWQVPASDNGAPITMYRVEW 5614          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8EGP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGP9_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 LDVVDGPYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQW 264
            LDV +G Y   + GL  G  Y+V V+A+NALG+G+P+A +   P A P+ PR V LE V  S + L V W++PA +NGA +T +RV+W
Sbjct: 5478 LDVPNGRYEHTIEGLVPGVRYAVWVTALNALGQGLPAAPMFNVPHAAPEQPRLVELERVPGSSSKLAVFWQVPASDNGAPITMYRVEW 5565          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A5A8DTS9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTS9_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-17
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 LDVVDGPYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQW 264
            LDV +G Y   + GL  G  Y+V V+A+NALG+G+P+A +   P A P+ PR V LE V  S + L V W++PA +NGA +T +RV+W
Sbjct: 5534 LDVPNGRYEHTIEGLVPGVRYAVWVTALNALGQGLPAAPMFNVPHAAPEQPRLVELERVPGSSSKLAVFWQVPASDNGAPITMYRVEW 5621          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: W2R3C1_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R3C1_PHYPN)

HSP 1 Score: 71.6 bits (174), Expect = 2.700e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   40 GLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWR 267
            G   G  +SV V A N+ G G+PSAT S  P A+P AP +V L LV  S TSLR+ W  P   NGA +T++ V+WR
Sbjct: 5853 GGTNGPGFSVRVLAKNSAGYGLPSATASLKPMAVPAAPTNVELRLVAGSSTSLRLWWNAPTTNNGAIITYYVVEWR 5928          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A8J5MA48_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA48_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.700e-12
Identity = 43/100 (43.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   19 PYTLQLHGLEQ-----------------GEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWR 267
            PYT  + GL Q                 G  +SV V A N+ G G+PSAT S  P A+P AP +V L LV  S TSLR+ W  P   NGA VT + V+WR
Sbjct: 5808 PYTFLISGLTQPAASVEPQAPGEVGGTNGPGFSVRVVAKNSAGYGLPSATASLKPMAVPAAPTNVELRLVAGSSTSLRLWWDAPTTNNGAIVTQYVVEWR 5907          
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Match: A0A0W8BWK8_PHYNI (Titin n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BWK8_PHYNI)

HSP 1 Score: 71.2 bits (173), Expect = 3.670e-12
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   40 GLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDAPRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWR 267
            G   G  +SV V A N+ G G+PSAT S  P A+P AP +V L LV  S TSLR+ W  P   NGA +T++ V+WR
Sbjct: 1310 GGTNGPGFSVRVLAKNSAGYGLPSATASLKPMALPAAPTNVELRLVAGSSTSLRLWWNAPTTNNGAIITYYVVEWR 1385          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77794.18300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E3K0_CAFRO3.100e-2353.06Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EDT7_CAFRO3.100e-2353.06Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DUD1_CAFRO3.100e-2353.06Uncharacterized protein n=11 Tax=Cafeteria roenber... [more]
A0A5A8DYP9_CAFRO3.700e-1746.59Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CWJ7_CAFRO3.700e-1746.59Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EGP9_CAFRO3.700e-1746.59Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DTS9_CAFRO3.700e-1746.59Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
W2R3C1_PHYPN2.700e-1248.68Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
A0A8J5MA48_9STRA2.700e-1243.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A0W8BWK8_PHYNI3.670e-1248.68Titin n=1 Tax=Phytophthora nicotianae TaxID=4790 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77794contigM-pyrifera_M_contig77794:488..808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog653948.CCA17183
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816679.0731337-CDS-M-pyrifera_M_contig77794:487..8081622816679.0731337-CDS-M-pyrifera_M_contig77794:487..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77794 488..808 -
1692278114.9831803-CDS-M-pyrifera_M_contig77794:487..8081692278114.9831803-CDS-M-pyrifera_M_contig77794:487..808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77794 488..808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77794.18300.1prot_M-pyrifera_M_contig77794.18300.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77794 488..808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77794.18300.1

>prot_M-pyrifera_M_contig77794.18300.1 ID=prot_M-pyrifera_M_contig77794.18300.1|Name=mRNA_M-pyrifera_M_contig77794.18300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LDVVDGPYTLQLHGLEQGEEYSVHVSAINALGEGIPSATVSETPRAIPDA
PRDVTLELVDSSETSLRVVWRMPADENGADVTHFRVQWRQVDDVAEAMEP
EAGLTDD
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mRNA from alignment at M-pyrifera_M_contig77794:488..808-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77794.18300.1 ID=mRNA_M-pyrifera_M_contig77794.18300.1|Name=mRNA_M-pyrifera_M_contig77794.18300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig77794:488..808- (Macrocystis pyrifera P11B4 male)
CTTGATGTGGTTGATGGTCCATACACATTGCAACTTCATGGATTAGAACA AGGAGAAGAGTACTCTGTCCATGTTTCTGCCATCAACGCCCTTGGAGAAG GGATCCCAAGTGCAACTGTGTCTGAAACCCCACGTGCTATTCCGGATGCA CCAAGAGATGTAACTTTGGAACTTGTTGATAGTTCCGAGACTTCCCTTCG TGTTGTGTGGAGGATGCCAGCGGATGAAAACGGTGCAGATGTTACACACT TCCGTGTGCAATGGCGACAAGTGGATGATGTAGCGGAAGCCATGGAACCT GAAGCTGGTTTGACGGATGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77794:488..808-

>mRNA_M-pyrifera_M_contig77794.18300.1 ID=mRNA_M-pyrifera_M_contig77794.18300.1|Name=mRNA_M-pyrifera_M_contig77794.18300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig77794:488..808- (Macrocystis pyrifera P11B4 male)
CTTGATGTGGTTGATGGTCCATACACATTGCAACTTCATGGATTAGAACA
AGGAGAAGAGTACTCTGTCCATGTTTCTGCCATCAACGCCCTTGGAGAAG
GGATCCCAAGTGCAACTGTGTCTGAAACCCCACGTGCTATTCCGGATGCA
CCAAGAGATGTAACTTTGGAACTTGTTGATAGTTCCGAGACTTCCCTTCG
TGTTGTGTGGAGGATGCCAGCGGATGAAAACGGTGCAGATGTTACACACT
TCCGTGTGCAATGGCGACAAGTGGATGATGTAGCGGAAGCCATGGAACCT
GAAGCTGGTTTGACGGATGATCTTGATGTGGTTGATGGTCCATACACATT
GCAACTTCATGGATTAGAACAAGGAGAAGAGTACTCTGTCCATGTTTCTG
CCATCAACGCCCTTGGAGAAGGGATCCCAAGTGCAACTGTGTCTGAAACC
CCACGTGCTATTCCGGATGCACCAAGAGATGTAACTTTGGAACTTGTTGA
TAGTTCCGAGACTTCCCTTCGTGTTGTGTGGAGGATGCCAGCGGATGAAA
ACGGTGCAGATGTTACACACTTCCGTGTGCAATGGCGACAAGTGGATGAT
GTAGCGGAAGCCATGGAACCTGAAGCTGGTTTGACGGATGAT
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