mRNA_M-pyrifera_M_contig77788.18296.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77788.18296.1
Unique NamemRNA_M-pyrifera_M_contig77788.18296.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: A0A1Z5JMG9_FISSO (Condensin-2 complex subunit H2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMG9_FISSO)

HSP 1 Score: 64.7 bits (156), Expect = 2.720e-9
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  148 RSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            R+H+ AF R AE+Y + T+LT++VD W++R+ P+L EEE R  FD+   G +++ +   E  K  V   D  EK ++  D   F+ V +    F+VCR FL
Sbjct:  492 RAHLQAFAREAEKYASETKLTQRVDQWQQRLQPLLQEEEERPVFDIHEYGHQVIESMENEITKTHV---DTNEKPSLIVD---FSRVTRHKPNFEVCRLFL 586          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: A0A1Z5KRA5_FISSO (Condensin-2 complex subunit H2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA5_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 5.020e-9
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  148 RSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            R+H+ AF R AE+Y + T+LT++VD W++R+ P+L EEE R  FD+   G +++ +   E  KI     D  EK ++  D   F+ V +    F+VCR FL
Sbjct:  478 RAHLQAFAREAEKYASETKLTQRVDQWQQRLQPLLQEEEERPVFDIYEYGHQVIESLENEITKIPP---DTNEKPSLIVD---FSRVTRQKPNFEVCRLFL 572          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: A0A0L0DLP1_THETB (Condensin-2 complex subunit H2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DLP1_THETB)

HSP 1 Score: 62.8 bits (151), Expect = 1.280e-8
Identity = 28/68 (41.18%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  106 NAGRGGEWDYGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELL 309
            N G  GE  Y AA R H+A +L  A +Y + T+L+R+V  W+++++P+L ++ AR  FD+RA G+++L
Sbjct:  518 NEGAMGEGSYEAACREHIATYLAQAAQYASQTELSRRVQAWQDKVMPILRDDAARPAFDMRACGTQVL 585          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: A0A484DXE1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXE1_BRELC)

HSP 1 Score: 62.0 bits (149), Expect = 2.350e-8
Identity = 35/119 (29.41%), Postives = 58/119 (48.74%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLA-------------TTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            Y    R H+A F+ G E Y+  + L++KV++W+E++ P+L +++ R  FD+ A G +LL               +   KK+ +VE              V F ++     PF+VCR FL
Sbjct:  485 YEEICREHLATFMAGTETYMRESDLSKKVNEWQEKLTPLLLQQDTRPPFDIHASGRDLLTRLHEAQLGADGLVASLRSKKRARVER----------AGAVPFETLVDGKRPFEVCRLFL 593          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: UPI000BA82BB1 (condensin-2 complex subunit H2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA82BB1)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-8
Identity = 33/106 (31.13%), Postives = 51/106 (48.11%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            Y   VR HV  +L  A ++   T LTR+V+ W ER+ P L  EE RG +D+   G+ ++ T   E+K+                  + F+  CQ    +++CR FL
Sbjct:  136 YEELVRKHVENYLSSAAQFKQLTDLTRRVNQWEERIKPKLELEEKRGSYDIHVCGAHVMETFPAEEKR----------------STILFSDFCQGKERWEICRYFL 225          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: UPI001458798B (condensin-2 complex subunit H2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458798B)

HSP 1 Score: 61.2 bits (147), Expect = 4.340e-8
Identity = 32/107 (29.91%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  130 DYGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            DY   VR HV  ++  A+EY   T+L+++V +W ++++P L EEE    FD+   G+++L   + +K                    V F  V     PF++CR FL
Sbjct:  486 DYEELVRQHVEQYMASAQEYAQITELSQRVAEWEDKVIPKLEEEENHEPFDINKYGTKVLNNLSQDKT-------------------VPFKCVANGKPPFEICRLFL 573          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: A0A2D4BJJ2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJJ2_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 4.410e-8
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAME 327
            Y    R H+ AF+RG E+Y+  T LTR+V+DW++++ P+L E++    FD+   G  +L    ME
Sbjct:  525 YEEICRQHLEAFMRGTEQYIRETDLTRQVNDWQDKLTPILKEQDRHPPFDIHRYGQSILENLEME 589          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: UPI0009E57569 (condensin-2 complex subunit H2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E57569)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-7
Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            Y   VR +V  +L  A++Y   T+L+R+V DW ER+VPVLA+E+    FD+   G E+L +                 K   + D   F ++     PF++CR FL
Sbjct:  309 YEEMVRQYVEGYLTEAQQYAQETELSRRVRDWEERIVPVLAQEDTHRPFDIHKYGEEILHSF----------------KGKCNQD---FKALANKKEPFEICRLFL 395          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: R7V2S7_CAPTE (Condensin-2 complex subunit H2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V2S7_CAPTE)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-7
Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            Y   VR +V  +L  AE+Y   T+L+++V DW  +++P L EEEA   FD+   G+ ++          K E ++  + E  D+  + F  + +    ++VCR FL
Sbjct:  469 YEQLVRQYVDGYLASAEQYAQITELSKRVSDWENKILPKLEEEEAHDGFDIHVCGTHVINA-------FKAEPENTMQTEEPDSSTIEFRKMVKNKPQYEVCRIFL 567          
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Match: F0WCS6_9STRA (Condensin2 complex subunit H2 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCS6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-7
Identity = 30/106 (28.30%), Postives = 50/106 (47.17%), Query Frame = 1
Query:  133 YGAAVRSHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGSELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL 450
            Y    R H++ F++G EEYL+ + LT+K+  W+ ++ P L E+     FD++  GS++L                    + +    V F  +     P+QVCR FL
Sbjct:  488 YEELCRQHISDFMKGTEEYLHESNLTKKITFWKAKLTPCLKEQATHSAFDIQTYGSQILTQL----------------NDPIIPSSVPFDQLVTGFPPYQVCRTFL 577          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77788.18296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z5JMG9_FISSO2.720e-938.61Condensin-2 complex subunit H2 n=1 Tax=Fistulifera... [more]
A0A1Z5KRA5_FISSO5.020e-938.61Condensin-2 complex subunit H2 n=1 Tax=Fistulifera... [more]
A0A0L0DLP1_THETB1.280e-841.18Condensin-2 complex subunit H2 n=1 Tax=Thecamonas ... [more]
A0A484DXE1_BRELC2.350e-829.41Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
UPI000BA82BB13.760e-831.13condensin-2 complex subunit H2-like n=1 Tax=Limulu... [more]
UPI001458798B4.340e-829.91condensin-2 complex subunit H2-like n=1 Tax=Pecten... [more]
A0A2D4BJJ2_PYTIN4.410e-838.46Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI0009E575691.020e-733.02condensin-2 complex subunit H2-like n=1 Tax=Orbice... [more]
R7V2S7_CAPTE1.090e-730.19Condensin-2 complex subunit H2 n=1 Tax=Capitella t... [more]
F0WCS6_9STRA2.740e-728.30Condensin2 complex subunit H2 putative n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77788contigM-pyrifera_M_contig77788:1..450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog4792.ETI54100
Preferred nameNCAPH2
KEGG koko:K11490
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
EggNOG free text desc.Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
EggNOG OGs3Q9H5@4776,KOG2359@1,KOG2359@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.9094381-CDS-M-pyrifera_M_contig77788:0..4501622816678.9094381-CDS-M-pyrifera_M_contig77788:0..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77788 1..450 -
1692278114.8965135-CDS-M-pyrifera_M_contig77788:0..4501692278114.8965135-CDS-M-pyrifera_M_contig77788:0..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77788 1..450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77788.18296.1prot_M-pyrifera_M_contig77788.18296.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77788 1..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77788.18296.1

>prot_M-pyrifera_M_contig77788.18296.1 ID=prot_M-pyrifera_M_contig77788.18296.1|Name=mRNA_M-pyrifera_M_contig77788.18296.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MGDDDGGFGELDGGFGGGGMGEEVGGLEGMLEEEENAGRGGEWDYGAAVR
SHVAAFLRGAEEYLNATQLTRKVDDWRERMVPVLAEEEARGEFDVRALGS
ELLATTAMEKKKIKVEEKDEEEKEAVDTDGVRFASVCQASSPFQVCRAFL
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mRNA from alignment at M-pyrifera_M_contig77788:1..450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77788.18296.1 ID=mRNA_M-pyrifera_M_contig77788.18296.1|Name=mRNA_M-pyrifera_M_contig77788.18296.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig77788:1..450- (Macrocystis pyrifera P11B4 male)
ATGGGAGATGATGATGGAGGGTTTGGAGAATTGGATGGTGGGTTTGGAGG TGGAGGAATGGGTGAGGAAGTTGGTGGGTTGGAAGGGATGCTGGAGGAGG AGGAAAATGCTGGACGAGGTGGAGAGTGGGATTATGGTGCAGCAGTACGT TCTCATGTGGCTGCTTTCTTGCGTGGTGCAGAAGAGTATCTCAATGCCAC TCAATTGACTCGCAAAGTGGATGATTGGCGTGAACGAATGGTTCCTGTGC TTGCTGAAGAAGAAGCTCGTGGAGAGTTTGATGTAAGAGCACTTGGATCA GAACTGTTGGCCACTACAGCCATGGAGAAGAAGAAGATTAAGGTGGAAGA AAAGGATGAAGAAGAAAAAGAAGCGGTGGATACGGATGGAGTGCGCTTTG CAAGTGTGTGTCAAGCTTCATCTCCTTTCCAAGTATGTCGCGCCTTCCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77788:1..450-

>mRNA_M-pyrifera_M_contig77788.18296.1 ID=mRNA_M-pyrifera_M_contig77788.18296.1|Name=mRNA_M-pyrifera_M_contig77788.18296.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig77788:1..450- (Macrocystis pyrifera P11B4 male)
ATGGGAGATGATGATGGAGGGTTTGGAGAATTGGATGGTGGGTTTGGAGG
TGGAGGAATGGGTGAGGAAGTTGGTGGGTTGGAAGGGATGCTGGAGGAGG
AGGAAAATGCTGGACGAGGTGGAGAGTGGGATTATGGTGCAGCAGTACGT
TCTCATGTGGCTGCTTTCTTGCGTGGTGCAGAAGAGTATCTCAATGCCAC
TCAATTGACTCGCAAAGTGGATGATTGGCGTGAACGAATGGTTCCTGTGC
TTGCTGAAGAAGAAGCTCGTGGAGAGTTTGATGTAAGAGCACTTGGATCA
GAACTGTTGGCCACTACAGCCATGGAGAAGAAGAAGATTAAGGTGGAAGA
AAAGGATGAAGAAGAAAAAGAAGCGGTGGATACGGATGGAGTGCGCTTTG
CAAGTGTGTGTCAAGCTTCATCTCCTTTCCAAGTATGTCGCGCCTTCCTA
ATGGGAGATGATGATGGAGGGTTTGGAGAATTGGATGGTGGGTTTGGAGG
TGGAGGAATGGGTGAGGAAGTTGGTGGGTTGGAAGGGATGCTGGAGGAGG
AGGAAAATGCTGGACGAGGTGGAGAGTGGGATTATGGTGCAGCAGTACGT
TCTCATGTGGCTGCTTTCTTGCGTGGTGCAGAAGAGTATCTCAATGCCAC
TCAATTGACTCGCAAAGTGGATGATTGGCGTGAACGAATGGTTCCTGTGC
TTGCTGAAGAAGAAGCTCGTGGAGAGTTTGATGTAAGAGCACTTGGATCA
GAACTGTTGGCCACTACAGCCATGGAGAAGAAGAAGATTAAGGTGGAAGA
AAAGGATGAAGAAGAAAAAGAAGCGGTGGATACGGATGGAGTGCGCTTTG
CAAGTGTGTGTCAAGCTTCATCTCCTTTCCAAGTATGTCGCGCCTTCCTA
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