mRNA_M-pyrifera_M_contig77777.18293.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77777.18293.1
Unique NamemRNA_M-pyrifera_M_contig77777.18293.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A7S4IVI2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IVI2_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 7.110e-22
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNLAGGDMG 201
            SLNP WNEFFTLHVNNP +E LL+EVKD D IGKDDSLG  ++ + DL RGVEK+ WL L GG  G
Sbjct:   54 SLNPEWNEFFTLHVNNPQSERLLIEVKDKDKIGKDDSLGTVQMSLFDLQRGVEKKCWLALQGGSTG 119          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: F4PR56_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PR56_CAVFA)

HSP 1 Score: 57.4 bits (137), Expect = 5.480e-8
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNLA 186
            +LNP W + FTL VN+   +ML++EV D+DT+G DD +G   + +  L RGVE   W NL+
Sbjct:  418 TLNPTWEQSFTLPVNDVLVDMLILEVWDHDTVGNDDLIGFVGIDLALLPRGVEVITWENLS 478          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: L8GJ80_ACACA (C2 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJ80_ACACA)

HSP 1 Score: 54.3 bits (129), Expect = 6.670e-7
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWL---NLAGG 192
            +LNP W E F+L V + +A++L V+V D+D + KDD +G A V +  LV+ VE  VW    N+A G
Sbjct:   47 TLNPVWEELFSLPVKDLDADVLHVQVMDWDRVSKDDPIGDASVALTHLVQEVESDVWAPLTNVASG 112          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A152AA80_9MYCE (Rhodopsin n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152AA80_9MYCE)

HSP 1 Score: 52.8 bits (125), Expect = 2.310e-6
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVE 162
            +LNP WN+ FT+ ++N   ++L++EV D DTIGKDD +G   +    L RGVE
Sbjct:  225 NLNPTWNQTFTVDISNAQHDLLVLEVFDKDTIGKDDEIGYVAIDPALLPRGVE 277          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A8J4PZA1_9MYCE (C2 domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PZA1_9MYCE)

HSP 1 Score: 51.6 bits (122), Expect = 5.820e-6
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVE 162
            +LNP W++ F L + N + E+L++EV DYD++GK+D LG   + I  L RG+E
Sbjct:  149 NLNPVWDQTFGLFIRNVDHEILVIEVIDYDSLGKNDPLGYFAINISTLPRGIE 201          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A5A7R1M8_STRAF (Calcium-dependent lipid-binding family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R1M8_STRAF)

HSP 1 Score: 51.2 bits (121), Expect = 8.190e-6
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNL 183
            +LNP WNE F + V  P  +MLL+ + D+D +G  D LG    P+  L     K+V L+L
Sbjct:  306 TLNPEWNEDFKISVKEPQTQMLLINIYDWDKVGSHDRLGTQNFPLKMLAPNEPKQVTLDL 365          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A022RGT5_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RGT5_ERYGU)

HSP 1 Score: 50.8 bits (120), Expect = 1.120e-5
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNL 183
            +LNP WNE F L V +P ++MLL+ V D+D +G  D LG    P+  L     K V L+L
Sbjct:  306 TLNPEWNEDFKLSVKDPQSQMLLINVYDWDKVGSHDRLGAQIFPLKMLKPNEAKEVTLDL 365          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A830CG12_9LAMI (Synaptotagmin-3 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CG12_9LAMI)

HSP 1 Score: 48.9 bits (115), Expect = 5.300e-5
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 1
Query:    4 SLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNL 183
            +LNP WNE F L V  P ++MLLV V D+D +G  D LG    P+  L     +   L+L
Sbjct:  187 TLNPEWNEDFKLSVKEPQSQMLLVNVFDWDKVGSHDRLGTQTFPLKLLTPNEPREATLDL 246          
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Match: A0A6J8F0A3_MYTCO (MYOF n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8F0A3_MYTCO)

HSP 1 Score: 48.9 bits (115), Expect = 5.520e-5
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 SSLNPNWNEFFTLHVNNPN---AEMLLVEVKDYDTIGKDDSLGKARVPIHDLVRGVEKRVWLNLAGGD 195
            SSLNPNW E F   +       ++ LLVE+KD++ +G++  L K +VP+ +L++G  +   LNL   D
Sbjct:   43 SSLNPNWGETFDFDLKGQTLGGSDELLVEIKDWERVGRNRLLAKCKVPLRNLLKGGAQSENLNLTMQD 110          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77777.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S4IVI2_9EUKA7.110e-2268.18Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
F4PR56_CAVFA5.480e-845.90Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
L8GJ80_ACACA6.670e-743.94C2 domain containing protein n=1 Tax=Acanthamoeba ... [more]
A0A152AA80_9MYCE2.310e-647.17Rhodopsin n=1 Tax=Tieghemostelium lacteum TaxID=36... [more]
A0A8J4PZA1_9MYCE5.820e-645.28C2 domain-containing protein n=1 Tax=Polysphondyli... [more]
A0A5A7R1M8_STRAF8.190e-640.00Calcium-dependent lipid-binding family protein n=1... [more]
A0A022RGT5_ERYGU1.120e-543.33Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A830CG12_9LAMI5.300e-541.67Synaptotagmin-3 n=1 Tax=Phtheirospermum japonicum ... [more]
A0A6J8F0A3_MYTCO5.520e-538.24MYOF n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77777contigM-pyrifera_M_contig77777:35..235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog5762.XP_002669212.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.C2 domain
EggNOG OGsCOG5038@1,KOG1012@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.811851-CDS-M-pyrifera_M_contig77777:34..2351622816678.811851-CDS-M-pyrifera_M_contig77777:34..235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77777 35..235 -
1692278114.84436-CDS-M-pyrifera_M_contig77777:34..2351692278114.84436-CDS-M-pyrifera_M_contig77777:34..235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77777 35..235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77777.18293.1prot_M-pyrifera_M_contig77777.18293.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77777 35..235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77777.18293.1

>prot_M-pyrifera_M_contig77777.18293.1 ID=prot_M-pyrifera_M_contig77777.18293.1|Name=mRNA_M-pyrifera_M_contig77777.18293.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
SSLNPNWNEFFTLHVNNPNAEMLLVEVKDYDTIGKDDSLGKARVPIHDLV
RGVEKRVWLNLAGGDMG
back to top

mRNA from alignment at M-pyrifera_M_contig77777:35..235-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77777.18293.1 ID=mRNA_M-pyrifera_M_contig77777.18293.1|Name=mRNA_M-pyrifera_M_contig77777.18293.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig77777:35..235- (Macrocystis pyrifera P11B4 male)
TCCAGCCTCAACCCCAATTGGAACGAGTTCTTCACGCTGCACGTGAACAA CCCCAATGCGGAGATGCTGCTGGTGGAGGTGAAGGACTACGACACCATAG GGAAGGACGACTCGCTGGGCAAGGCGCGCGTGCCCATCCACGACCTCGTG CGCGGCGTGGAGAAGAGGGTGTGGCTCAACCTTGCTGGCGGGGACATGGG C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77777:35..235-

>mRNA_M-pyrifera_M_contig77777.18293.1 ID=mRNA_M-pyrifera_M_contig77777.18293.1|Name=mRNA_M-pyrifera_M_contig77777.18293.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig77777:35..235- (Macrocystis pyrifera P11B4 male)
TCCAGCCTCAACCCCAATTGGAACGAGTTCTTCACGCTGCACGTGAACAA
CCCCAATGCGGAGATGCTGCTGGTGGAGGTGAAGGACTACGACACCATAG
GGAAGGACGACTCGCTGGGCAAGGCGCGCGTGCCCATCCACGACCTCGTG
CGCGGCGTGGAGAAGAGGGTGTGGCTCAACCTTGCTGGCGGGGACATGGG
CTCCAGCCTCAACCCCAATTGGAACGAGTTCTTCACGCTGCACGTGAACA
ACCCCAATGCGGAGATGCTGCTGGTGGAGGTGAAGGACTACGACACCATA
GGGAAGGACGACTCGCTGGGCAAGGCGCGCGTGCCCATCCACGACCTCGT
GCGCGGCGTGGAGAAGAGGGTGTGGCTCAACCTTGCTGGCGGGGACATGG
GC
back to top