mRNA_M-pyrifera_M_contig77733.18286.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77733.18286.1
Unique NamemRNA_M-pyrifera_M_contig77733.18286.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.270e-22
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 QLLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMG---GKKR 177
            +LLANMEFR TDH SE+QLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQ     G+KR
Sbjct:  333 ELLANMEFRPTDHASERQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQQNNSAGRKR 394
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.490e-21
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QLLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LLANMEFR TDH SEKQLKLDVIAVYNHRLDEREKRK+FVIE+NLLDYKK   G KKR
Sbjct:  349 ELLANMEFRPTDHASEKQLKLDVIAVYNHRLDEREKRKKFVIENNLLDYKKPPPGSKKR 407
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A3R6XSD6_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSD6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.290e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VIA+YN +LDERE+RK+FV+EH LLDYKK Q   ++R
Sbjct:  172 ILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKKYQQNERRR 229
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A024UKU7_9STRA (Transcriptional adapter n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKU7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.440e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VIA+YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  177 ILADMEFSEDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHQLLDYKKYQQNERRR 234
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: W4G8S8_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.960e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VIA+YN +LDERE+RK+FV+EH LLDYKK Q   ++R
Sbjct:  182 ILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKKYQQNERRR 239
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A6G0XE69_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE69_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.640e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  169 ILADMEFHEDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKKYQQNERRR 226
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A067C7N6_SAPPC (Transcriptional adapter n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7N6_SAPPC)

HSP 1 Score: 72.0 bits (175), Expect = 2.660e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VIA+YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  175 ILADMEFHDDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHGLLDYKKYQQVERRR 232
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A485LTC7_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTC7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.680e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  175 ILADMEFNDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKKYQQNERRR 232
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A1W0A0X6_9STRA (Transcriptional adapter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.810e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  177 ILADMEFHDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHGLLDYKKYQQVERRR 234
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BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Match: A0A1V9Z5Y1_9STRA (Transcriptional adapter n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Y1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.280e-12
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    4 LLANMEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMGGKKR 177
            +LA+MEF   DH +E++LKL VI +YN +LDERE+RK+FVIEH LLDYKK Q   ++R
Sbjct:  175 ILADMEFHEDDHPTERELKLKVIEIYNAKLDERERRKKFVIEHGLLDYKKYQQVERRR 232
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77733.18286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV7_ECTSI4.270e-2283.87Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE1.490e-2184.75Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R6XSD6_9STRA1.290e-1360.34Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
A0A024UKU7_9STRA1.440e-1362.07Transcriptional adapter n=2 Tax=Aphanomyces invada... [more]
W4G8S8_9STRA1.960e-1360.34Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
A0A6G0XE69_9STRA2.640e-1360.34Transcriptional adapter n=1 Tax=Aphanomyces euteic... [more]
A0A067C7N6_SAPPC2.660e-1362.07Transcriptional adapter n=2 Tax=Saprolegnia TaxID=... [more]
A0A485LTC7_9STRA2.680e-1360.34Transcriptional adapter n=1 Tax=Aphanomyces stella... [more]
A0A1W0A0X6_9STRA6.810e-1360.34Transcriptional adapter n=1 Tax=Thraustotheca clav... [more]
A0A1V9Z5Y1_9STRA1.280e-1260.34Transcriptional adapter n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77733contigM-pyrifera_M_contig77733:643..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Exons1
Model size177
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.3817732-CDS-M-pyrifera_M_contig77733:642..8041622816678.3817732-CDS-M-pyrifera_M_contig77733:642..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77733 643..804 -
1692278114.5638795-CDS-M-pyrifera_M_contig77733:642..8041692278114.5638795-CDS-M-pyrifera_M_contig77733:642..804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77733 643..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.3929543-UTR-M-pyrifera_M_contig77733:804..8191622816678.3929543-UTR-M-pyrifera_M_contig77733:804..819Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77733 805..819 -
1692278114.5926054-UTR-M-pyrifera_M_contig77733:804..8191692278114.5926054-UTR-M-pyrifera_M_contig77733:804..819Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77733 805..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77733.18286.1prot_M-pyrifera_M_contig77733.18286.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77733 643..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77733.18286.1

>prot_M-pyrifera_M_contig77733.18286.1 ID=prot_M-pyrifera_M_contig77733.18286.1|Name=mRNA_M-pyrifera_M_contig77733.18286.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MEFRSTDHISEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKKQQMG
GKKR
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mRNA from alignment at M-pyrifera_M_contig77733:643..819-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77733.18286.1 ID=mRNA_M-pyrifera_M_contig77733.18286.1|Name=mRNA_M-pyrifera_M_contig77733.18286.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig77733:643..819- (Macrocystis pyrifera P11B4 male)
CAGCTACTGGCGAACATGGAGTTCCGGTCGACGGATCATATCAGCGAGAA
GCAGCTCAAGCTCGACGTGATCGCCGTTTACAACCACCGCTTGGACGAGC
GGGAAAAGCGGAAGCGGTTCGTCATCGAGCACAACTTGCTGGACTACAAG
AAGCAGCAGATGGGCGGCAAGAAACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77733:643..819-

>mRNA_M-pyrifera_M_contig77733.18286.1 ID=mRNA_M-pyrifera_M_contig77733.18286.1|Name=mRNA_M-pyrifera_M_contig77733.18286.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig77733:643..819- (Macrocystis pyrifera P11B4 male)
ATGGAGTTCCGGTCGACGGATCATATCAGCGAGAAGCAGCTCAAGCTCGA
CGTGATCGCCGTTTACAACCACCGCTTGGACGAGCGGGAAAAGCGGAAGC
GGTTCGTCATCGAGCACAACTTGCTGGACTACAAGAAGCAGCAGATGGGC
GGCAAGAAACGCATGGAGTTCCGGTCGACGGATCATATCAGCGAGAAGCA
GCTCAAGCTCGACGTGATCGCCGTTTACAACCACCGCTTGGACGAGCGGG
AAAAGCGGAAGCGGTTCGTCATCGAGCACAACTTGCTGGACTACAAGAAG
CAGCAGATGGGCGGCAAGAAACGC
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