mRNA_M-pyrifera_M_contig77709.18284.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77709.18284.1
Unique NamemRNA_M-pyrifera_M_contig77709.18284.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig77709.18284.1 vs. uniprot
Match: A0A5A8DJ39_CAFRO (Autophagy-related protein 27 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ39_CAFRO)

HSP 1 Score: 79.0 bits (193), Expect = 4.230e-15
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 SPAFQ---VASPNGGWVPPDADRCHRLGARYAGGANSE-WGLFDNTDPSKGVTLRYKGGDPCGAGVGN-------RSLAIHVLCADDSKNLPDKGETVLETKNCLYEITFASTWGCPTECPV 333
            S AFQ   +A  NG    P A+ CHRL A  A    +E W L +  +PS+GV +RY+GGD C A   +       RSL +   C DD+ N+ D+ ETVLE   C Y+I   +  GCPT+CP+
Sbjct:  105 SAAFQYLYLAGKNG--AAPYAE-CHRLSADVASHPGNETWSLVEPGNPSRGVQVRYEGGDLCCANGMSACSDPQPRSLELQFFCKDDTANVFDR-ETVLEYGKCHYKIWLDTASGCPTQCPI 222
[Close]
BLAST of mRNA_M-pyrifera_M_contig77709.18284.1 vs. uniprot
Match: A0A7S1TRT5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRT5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.920e-9
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = 1 
Query:   61 CHRLGARYAGGANSEWGLFDNTDPSKGVTLRYKGGDP---CGAGVGNRSLAIHVLCADDSKNLPDKGETVLETKN----CLYEITFASTWGCPTECPVNNH 342
            C+  G       ++ W L+D +D +KGV+L+Y+  D    C + V   S  I VLC D       K E V+ + N    C Y IT  S WGCP EC V  +
Sbjct:  108 CYAAGVYDPNQDDAMWSLYDASDATKGVSLKYQSSDEYALCSSNV-RPSTTIDVLCKD-------KSEVVVLSANEPEMCQYHITLESVWGCPRECRVGGN 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77709.18284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8DJ39_CAFRO4.230e-1541.80Autophagy-related protein 27 n=2 Tax=Cafeteria roe... [more]
A0A7S1TRT5_9STRA2.920e-935.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77709contigM-pyrifera_M_contig77709:658..999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue9e-11
Seed eggNOG ortholog44056.XP_009040182.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Epidermal growth factor-like domain.
EggNOG OGs2D6DK@1,2T1NB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.1966608-CDS-M-pyrifera_M_contig77709:657..9991622816678.1966608-CDS-M-pyrifera_M_contig77709:657..999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77709 658..999 +
1692278114.4450018-CDS-M-pyrifera_M_contig77709:657..9991692278114.4450018-CDS-M-pyrifera_M_contig77709:657..999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77709 658..999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77709.18284.1prot_M-pyrifera_M_contig77709.18284.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77709 658..999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77709.18284.1

>prot_M-pyrifera_M_contig77709.18284.1 ID=prot_M-pyrifera_M_contig77709.18284.1|Name=mRNA_M-pyrifera_M_contig77709.18284.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
SPAFQVASPNGGWVPPDADRCHRLGARYAGGANSEWGLFDNTDPSKGVTL
RYKGGDPCGAGVGNRSLAIHVLCADDSKNLPDKGETVLETKNCLYEITFA
STWGCPTECPVNNH
back to top

mRNA from alignment at M-pyrifera_M_contig77709:658..999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77709.18284.1 ID=mRNA_M-pyrifera_M_contig77709.18284.1|Name=mRNA_M-pyrifera_M_contig77709.18284.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig77709:658..999+ (Macrocystis pyrifera P11B4 male)
TCCCCTGCGTTCCAAGTTGCTTCTCCGAATGGCGGCTGGGTGCCTCCCGA
TGCGGATCGTTGCCATCGTTTGGGAGCGCGGTATGCTGGCGGAGCGAATT
CCGAGTGGGGTTTGTTCGACAACACGGACCCGTCCAAGGGCGTGACACTG
CGATACAAGGGAGGCGACCCTTGCGGGGCCGGGGTTGGGAACCGGTCGCT
GGCGATCCACGTCTTGTGCGCCGATGACAGCAAGAACTTGCCGGACAAAG
GGGAGACGGTGCTGGAGACCAAGAACTGCCTCTACGAAATCACCTTCGCC
TCCACCTGGGGCTGCCCCACGGAATGCCCCGTGAACAACCAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77709:658..999+

>mRNA_M-pyrifera_M_contig77709.18284.1 ID=mRNA_M-pyrifera_M_contig77709.18284.1|Name=mRNA_M-pyrifera_M_contig77709.18284.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig77709:658..999+ (Macrocystis pyrifera P11B4 male)
TCCCCTGCGTTCCAAGTTGCTTCTCCGAATGGCGGCTGGGTGCCTCCCGA
TGCGGATCGTTGCCATCGTTTGGGAGCGCGGTATGCTGGCGGAGCGAATT
CCGAGTGGGGTTTGTTCGACAACACGGACCCGTCCAAGGGCGTGACACTG
CGATACAAGGGAGGCGACCCTTGCGGGGCCGGGGTTGGGAACCGGTCGCT
GGCGATCCACGTCTTGTGCGCCGATGACAGCAAGAACTTGCCGGACAAAG
GGGAGACGGTGCTGGAGACCAAGAACTGCCTCTACGAAATCACCTTCGCC
TCCACCTGGGGCTGCCCCACGGAATGCCCCGTGAACAACCACTCCCCTGC
GTTCCAAGTTGCTTCTCCGAATGGCGGCTGGGTGCCTCCCGATGCGGATC
GTTGCCATCGTTTGGGAGCGCGGTATGCTGGCGGAGCGAATTCCGAGTGG
GGTTTGTTCGACAACACGGACCCGTCCAAGGGCGTGACACTGCGATACAA
GGGAGGCGACCCTTGCGGGGCCGGGGTTGGGAACCGGTCGCTGGCGATCC
ACGTCTTGTGCGCCGATGACAGCAAGAACTTGCCGGACAAAGGGGAGACG
GTGCTGGAGACCAAGAACTGCCTCTACGAAATCACCTTCGCCTCCACCTG
GGGCTGCCCCACGGAATGCCCCGTGAACAACCAC
back to top