mRNA_M-pyrifera_M_contig77681.18275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77681.18275.1
Unique NamemRNA_M-pyrifera_M_contig77681.18275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.510e-17
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 LIDQLFPLAGRTAGSSNLCRTCFFNTPLYIENNPGEEVPNYVDCPCCVLEVYDKDTAANKDGPRC 195
            L++    L G  A +S+LCR CFFNTPLY+  +P E++P+Y DCPCCVL++Y++D A N DG RC
Sbjct:  443 LVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYEQD-AFNLDGQRC 506
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BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-16
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   28 GRTAGSSNLCRTCFFNTPLYIENNPGEEVPNYVDCPCCVLEVYDKDTAANKDGPRCE 198
            G    S++ CR C FNTP + + NPGE++P+ VDCPCCVL++Y +DTA N+DG RCE
Sbjct:  585 GCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDIYKEDTAINEDGVRCE 641
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BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Match: D8LE44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE44_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 7.720e-14
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   28 GRTAGSSNLCRTCFFNTPLYIENNPGEEVPNYVDCPCCVLEVYDKDTAANKDGPR 192
            G    S++ CR C FNTP + + NPGE++P+ VDCPCCV++VY +DTA ++DG R
Sbjct:  263 GCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVVDVYKEDTAISEDGVR 317
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BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.120e-13
Identity = 26/47 (55.32%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   64 CFFNTPLYIENNPGEEVPNYVDCPCCVLEVYDKDTAANKDGPRCELI 204
            CFFNTPLY+E +P E++P+Y DCPCCVL++Y++D A + DG R  ++
Sbjct:    2 CFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQD-AFSLDGQRFPML 47
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BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.990e-7
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   25 AGRTAGSSNLCRTCFFNTPLYIENNPGE-EVPNYVDCPCCVLEVYDK 162
            AG   G S LCRTC+FN  +  E N  + ++P+Y +CPCCV++ YD+
Sbjct:  501 AGCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDR 547
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77681.18275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J9X3_9PHAE2.510e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9W9_9PHAE1.650e-1656.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE44_ECTSI7.720e-1452.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LE45_ECTSI1.120e-1355.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBT9_9PHAE6.990e-746.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77681contigM-pyrifera_M_contig77681:192..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.7913861-CDS-M-pyrifera_M_contig77681:191..3951622816677.7913861-CDS-M-pyrifera_M_contig77681:191..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77681 192..395 +
1692278114.2432878-CDS-M-pyrifera_M_contig77681:191..3951692278114.2432878-CDS-M-pyrifera_M_contig77681:191..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77681 192..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77681.18275.1prot_M-pyrifera_M_contig77681.18275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77681 192..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77681.18275.1

>prot_M-pyrifera_M_contig77681.18275.1 ID=prot_M-pyrifera_M_contig77681.18275.1|Name=mRNA_M-pyrifera_M_contig77681.18275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LIDQLFPLAGRTAGSSNLCRTCFFNTPLYIENNPGEEVPNYVDCPCCVLE
VYDKDTAANKDGPRCELI
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mRNA from alignment at M-pyrifera_M_contig77681:192..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77681.18275.1 ID=mRNA_M-pyrifera_M_contig77681.18275.1|Name=mRNA_M-pyrifera_M_contig77681.18275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig77681:192..395+ (Macrocystis pyrifera P11B4 male)
CTCATTGACCAATTATTCCCGCTCGCCGGTCGCACCGCAGGCTCGTCGAA
TCTGTGTCGCACTTGCTTCTTCAACACGCCTCTGTATATCGAAAACAACC
CTGGAGAGGAAGTGCCGAACTATGTGGATTGTCCGTGCTGCGTTCTGGAG
GTGTATGACAAAGACACTGCGGCAAACAAGGACGGGCCTCGATGTGAGTT
GATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77681:192..395+

>mRNA_M-pyrifera_M_contig77681.18275.1 ID=mRNA_M-pyrifera_M_contig77681.18275.1|Name=mRNA_M-pyrifera_M_contig77681.18275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig77681:192..395+ (Macrocystis pyrifera P11B4 male)
CTCATTGACCAATTATTCCCGCTCGCCGGTCGCACCGCAGGCTCGTCGAA
TCTGTGTCGCACTTGCTTCTTCAACACGCCTCTGTATATCGAAAACAACC
CTGGAGAGGAAGTGCCGAACTATGTGGATTGTCCGTGCTGCGTTCTGGAG
GTGTATGACAAAGACACTGCGGCAAACAAGGACGGGCCTCGATGTGAGTT
GATACTCATTGACCAATTATTCCCGCTCGCCGGTCGCACCGCAGGCTCGT
CGAATCTGTGTCGCACTTGCTTCTTCAACACGCCTCTGTATATCGAAAAC
AACCCTGGAGAGGAAGTGCCGAACTATGTGGATTGTCCGTGCTGCGTTCT
GGAGGTGTATGACAAAGACACTGCGGCAAACAAGGACGGGCCTCGATGTG
AGTTGATA
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