mRNA_M-pyrifera_M_contig77661.18272.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77661.18272.1
Unique NamemRNA_M-pyrifera_M_contig77661.18272.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A2E7KC40_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KC40_9PLAN)

HSP 1 Score: 250 bits (638), Expect = 7.430e-83
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 1
Query:    1 MVSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            MVSLPTVSYREQIK WPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW
Sbjct:    1 MVSLPTVSYREQIKTWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 121          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A517Q224_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q224_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 4.970e-70
Identity = 100/121 (82.64%), Postives = 113/121 (93.39%), Query Frame = 1
Query:    1 MVSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            M++LP  SYREQIK WPQSGKHILAH+DAETI+VYQAY+P IG +AAR GYFGG+FKY+RMSWIKPNFLWMMYRSAWGT+QGQEVVLGIRLR++FFDALLDQAVASSFPR D RF+DQ+EW
Sbjct:    1 MLNLPIASYREQIKAWPQSGKHILAHHDAETIMVYQAYNPTIGNYAARHGYFGGEFKYARMSWIKPNFLWMMYRSAWGTAQGQEVVLGIRLRRTFFDALLDQAVASSFPRRDRRFQDQSEW 121          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A2S8FZL1_9BACT (DUF4291 domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8FZL1_9BACT)

HSP 1 Score: 169 bits (428), Expect = 6.030e-51
Identity = 78/109 (71.56%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPR 330
            + LPT  Y EQ   WP SG+HILAH+D E+IVVYQAY P IG+FA   GYFGGDFKYSRMSWIKPNFLWMMYRS+WGTS+GQE VLG+RL + FFD+LL+QAV SS+ R
Sbjct:    1 MDLPTNPYVEQQSTWPSSGRHILAHFDDESIVVYQAYRPDIGEFAINHGYFGGDFKYSRMSWIKPNFLWMMYRSSWGTSEGQEKVLGVRLTRKFFDSLLEQAVPSSYSR 109          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A5C6ELD6_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6ELD6_9BACT)

HSP 1 Score: 167 bits (424), Expect = 3.000e-50
Identity = 78/118 (66.10%), Postives = 93/118 (78.81%), Query Frame = 1
Query:   10 LPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            + T SY EQ+  WP+SG+HILA +D +TI+VYQAY PAIG FAA+ GYFGGDFKY+RMSWIKPNFLWMMYRS WG S+GQEV+L IRLR++FFD+LL Q V SSF      + D  EW
Sbjct:    9 IDTASYSEQVLRWPESGRHILAQHDDDTILVYQAYRPAIGLFAAQHGYFGGDFKYTRMSWIKPNFLWMMYRSDWGRSEGQEVILAIRLRRTFFDSLLQQTVPSSFT--SALYSDHDEW 124          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A0A6RPA1_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Thiomargarita nelsonii TaxID=1003181 RepID=A0A0A6RPA1_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 6.240e-48
Identity = 71/107 (66.36%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSF 324
            +++ T +Y +QI+ WP++GKHILA+YD ETI+VYQAY P+IG FA + GYFGGDFKY+RMSWIKPNFLWMMYRS WGT +GQE++L IRLR+ FFD LL  AV S +
Sbjct:    1 MNIETQAYLKQIENWPKTGKHILANYDDETIIVYQAYRPSIGHFALKNGYFGGDFKYTRMSWIKPNFLWMMYRSGWGTKEGQEIILAIRLRREFFDELLSLAVPSKY 107          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A518CMS1_9PLAN (Uncharacterized protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CMS1_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 2.540e-47
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSF 324
            + LPT  Y +Q + WP SGKHILA +D +TI VYQAYSP IG FAA  GYFGG+F+YSRMSWIKPNFLWMMYRS WG S GQ+VVLGIRL + FFD++L+QAV SSF
Sbjct:    1 MKLPTERYLDQKRRWPSSGKHILASFDDDTIWVYQAYSPKIGLFAASNGYFGGEFRYSRMSWIKPNFLWMMYRSNWGQSSGQKVVLGIRLNRDFFDSILNQAVPSSF 107          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A1I3B8B6_9PLAN (Uncharacterized protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3B8B6_9PLAN)

HSP 1 Score: 159 bits (403), Expect = 3.710e-47
Identity = 75/120 (62.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            + L   ++ +Q + WP +G  ILA +D ETIVVYQAYS AIG+FA + G+FGG+FKYSRMSW+KPNFLWMMYRS WG SQGQEVVLGIRLR++FFD+LL+QAV S+F     RF++   W
Sbjct:    1 MKLSVEAFADQNRRWPATGHQILAQFDEETIVVYQAYSEAIGRFAIQHGHFGGEFKYSRMSWVKPNFLWMMYRSNWGQSQGQEVVLGIRLRRTFFDSLLEQAVPSTF--SPDRFREHAAW 118          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A6M5YK17_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YK17_9BACT)

HSP 1 Score: 158 bits (399), Expect = 1.450e-46
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            + L T  Y EQ+K+WP+ G+HILA +D+ETI+VYQ Y P+IG+FAA  G FGGDF YSRMSW+KPNFLWMMYRS WGT + QE+ L +RLR++FFD+LL  AV SS+ R   +F    +W
Sbjct:    1 MELITEPYSEQVKVWPKEGRHILAQFDSETIIVYQGYRPSIGRFAAEHGAFGGDFSYSRMSWVKPNFLWMMYRSGWGTKEEQEITLALRLRRAFFDSLLASAVPSSWDRK--QFATHEDW 118          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: UPI0014216D03 (DUF4291 domain-containing protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI0014216D03)

HSP 1 Score: 157 bits (397), Expect = 3.910e-46
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    4 VSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSF 324
            ++L T  Y +Q+  WP SG+HILA +D +TI+VYQAY P IG FA   G+FGG+F YSRMSWIKPNFLWMMYRS WG SQGQEVVL IRLR++FFD+LL+QAV SSF
Sbjct:    1 MTLATHPYTKQVLQWPTSGRHILAQFDDKTIIVYQAYRPEIGHFAVTHGHFGGEFSYSRMSWIKPNFLWMMYRSDWGRSQGQEVVLAIRLRRAFFDSLLEQAVPSSF 107          
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Match: A0A4V0HWF8_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0HWF8_9BACT)

HSP 1 Score: 157 bits (397), Expect = 4.920e-46
Identity = 70/118 (59.32%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   10 LPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRGYFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALLDQAVASSFPRGDGRFKDQTEW 363
            L T  Y+EQ+ +WP+ G+H+LA +D +T+VVYQAYSPAIG++AA  G FGGDF Y+RMSW+KPNFLWMMYRS WGT + QEV L +R+R+ FFD LL  AV SS+ R   +F+ + EW
Sbjct:    3 LLTEPYKEQVAVWPKQGRHVLAQFDNDTVVVYQAYSPAIGRYAAEHGVFGGDFSYTRMSWVKPNFLWMMYRSGWGTKENQEVTLALRVRRMFFDTLLAAAVPSSWDRE--QFETREEW 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77661.18272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KC40_9PLAN7.430e-8399.17Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517Q224_9PLAN4.970e-7082.64Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A2S8FZL1_9BACT6.030e-5171.56DUF4291 domain-containing protein n=1 Tax=Blastopi... [more]
A0A5C6ELD6_9BACT3.000e-5066.10Uncharacterized protein n=1 Tax=Rubripirellula ret... [more]
A0A0A6RPA1_9GAMM6.240e-4866.36Uncharacterized protein n=1 Tax=Candidatus Thiomar... [more]
A0A518CMS1_9PLAN2.540e-4770.09Uncharacterized protein n=1 Tax=Polystyrenella lon... [more]
A0A1I3B8B6_9PLAN3.710e-4762.50Uncharacterized protein n=1 Tax=Planctomicrobium p... [more]
A0A6M5YK17_9BACT1.450e-4659.17Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
UPI0014216D033.910e-4668.22DUF4291 domain-containing protein n=1 Tax=Rubinisp... [more]
A0A4V0HWF8_9BACT4.920e-4659.32Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77661contigM-pyrifera_M_contig77661:642..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score152.1
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog1123508.JH636443_gene4983
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4291)
EggNOG OGs2C03A@1,2IXDZ@203682,2Z86B@2
Ec32 ortholog descriptionProtein of unknown function DUF4291
Ec32 orthologEc-05_003100.1
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.5971174-CDS-M-pyrifera_M_contig77661:641..10041622816677.5971174-CDS-M-pyrifera_M_contig77661:641..1004Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77661 642..1004 +
1692278114.10551-CDS-M-pyrifera_M_contig77661:641..10041692278114.10551-CDS-M-pyrifera_M_contig77661:641..1004Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77661 642..1004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77661.18272.1prot_M-pyrifera_M_contig77661.18272.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77661 642..1004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77661.18272.1

>prot_M-pyrifera_M_contig77661.18272.1 ID=prot_M-pyrifera_M_contig77661.18272.1|Name=mRNA_M-pyrifera_M_contig77661.18272.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MVSLPTVSYREQIKIWPQSGKHILAHYDAETIVVYQAYSPAIGKFAARRG
YFGGDFKYSRMSWIKPNFLWMMYRSAWGTSQGQEVVLGIRLRKSFFDALL
DQAVASSFPRGDGRFKDQTEW
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mRNA from alignment at M-pyrifera_M_contig77661:642..1004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77661.18272.1 ID=mRNA_M-pyrifera_M_contig77661.18272.1|Name=mRNA_M-pyrifera_M_contig77661.18272.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig77661:642..1004+ (Macrocystis pyrifera P11B4 male)
ATGGTAAGTTTACCTACGGTCAGTTATCGGGAACAAATCAAAATCTGGCC GCAAAGCGGGAAACATATCTTAGCGCACTATGATGCGGAGACCATTGTGG TCTACCAGGCTTACAGCCCGGCGATTGGGAAGTTCGCCGCCCGGCGTGGA TACTTCGGAGGGGATTTCAAGTACTCGCGGATGAGCTGGATTAAACCCAA TTTCCTGTGGATGATGTACCGCAGTGCCTGGGGAACGTCACAGGGCCAGG AAGTGGTGCTGGGCATTCGCTTGCGGAAATCATTTTTTGATGCGCTGCTG GACCAGGCGGTGGCTTCTTCCTTTCCCCGTGGTGACGGGCGATTCAAAGA TCAAACTGAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77661:642..1004+

>mRNA_M-pyrifera_M_contig77661.18272.1 ID=mRNA_M-pyrifera_M_contig77661.18272.1|Name=mRNA_M-pyrifera_M_contig77661.18272.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig77661:642..1004+ (Macrocystis pyrifera P11B4 male)
ATGGTAAGTTTACCTACGGTCAGTTATCGGGAACAAATCAAAATCTGGCC
GCAAAGCGGGAAACATATCTTAGCGCACTATGATGCGGAGACCATTGTGG
TCTACCAGGCTTACAGCCCGGCGATTGGGAAGTTCGCCGCCCGGCGTGGA
TACTTCGGAGGGGATTTCAAGTACTCGCGGATGAGCTGGATTAAACCCAA
TTTCCTGTGGATGATGTACCGCAGTGCCTGGGGAACGTCACAGGGCCAGG
AAGTGGTGCTGGGCATTCGCTTGCGGAAATCATTTTTTGATGCGCTGCTG
GACCAGGCGGTGGCTTCTTCCTTTCCCCGTGGTGACGGGCGATTCAAAGA
TCAAACTGAGTGGATGGTAAGTTTACCTACGGTCAGTTATCGGGAACAAA
TCAAAATCTGGCCGCAAAGCGGGAAACATATCTTAGCGCACTATGATGCG
GAGACCATTGTGGTCTACCAGGCTTACAGCCCGGCGATTGGGAAGTTCGC
CGCCCGGCGTGGATACTTCGGAGGGGATTTCAAGTACTCGCGGATGAGCT
GGATTAAACCCAATTTCCTGTGGATGATGTACCGCAGTGCCTGGGGAACG
TCACAGGGCCAGGAAGTGGTGCTGGGCATTCGCTTGCGGAAATCATTTTT
TGATGCGCTGCTGGACCAGGCGGTGGCTTCTTCCTTTCCCCGTGGTGACG
GGCGATTCAAAGATCAAACTGAGTGG
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