mRNA_M-pyrifera_M_contig77661.18271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77661.18271.1
Unique NamemRNA_M-pyrifera_M_contig77661.18271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77661.18271.1 vs. uniprot
Match: A0A517PIE0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PIE0_9PLAN)

HSP 1 Score: 204 bits (520), Expect = 5.590e-66
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MGQYFLIANQNKQQFIDPFRLPVSEKISALLNSDLINTLLPYLIVGSQNRQYLKFKEAGYYTQKYLGAWYGDPVDLLGDYDEEEQSWIVRSEYENISIEI 300
            MGQYFLIANQNKQQFIDPFRLPVSEKISALLNSDLINTLLPYLIVGSQNRQYLKFKEAGYYTQKYLGAWYGDPVDLLGDYDEEEQSWIVRSEYENISIEI
Sbjct:    1 MGQYFLIANQNKQQFIDPFRLPVSEKISALLNSDLINTLLPYLIVGSQNRQYLKFKEAGYYTQKYLGAWYGDPVDLLGDYDEEEQSWIVRSEYENISIEI 100
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BLAST of mRNA_M-pyrifera_M_contig77661.18271.1 vs. uniprot
Match: A0A518FPE8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPE8_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 3.810e-57
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 MGQYFLIANQNKQQFIDPFRLPVSEKISALLNSDLINTLLPYLIVGSQNRQYLKFKEAGYYTQKYLGAWYGDPVDLLGDYDEEEQSWIVRSEYENISIEI 300
            MGQYFLIANQNKQQFIDPFRLPVSEKI ALLNSDLI +LLPYLIVGSQNRQYLKFKEAG+YTQKYLGAWYGDPVDLLGDYDEEE S +V S++ENISIE+
Sbjct:    1 MGQYFLIANQNKQQFIDPFRLPVSEKIPALLNSDLIYSLLPYLIVGSQNRQYLKFKEAGFYTQKYLGAWYGDPVDLLGDYDEEELSRMVHSQFENISIEV 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77661.18271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PIE0_9PLAN5.590e-66100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518FPE8_9PLAN3.810e-5789.00Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77661contigM-pyrifera_M_contig77661:75..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.5666652-CDS-M-pyrifera_M_contig77661:74..3741622816677.5666652-CDS-M-pyrifera_M_contig77661:74..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77661 75..374 +
1692278114.0952623-CDS-M-pyrifera_M_contig77661:74..3741692278114.0952623-CDS-M-pyrifera_M_contig77661:74..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77661 75..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77661.18271.1prot_M-pyrifera_M_contig77661.18271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77661 75..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77661.18271.1

>prot_M-pyrifera_M_contig77661.18271.1 ID=prot_M-pyrifera_M_contig77661.18271.1|Name=mRNA_M-pyrifera_M_contig77661.18271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MGQYFLIANQNKQQFIDPFRLPVSEKISALLNSDLINTLLPYLIVGSQNR
QYLKFKEAGYYTQKYLGAWYGDPVDLLGDYDEEEQSWIVRSEYENISIEI
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mRNA from alignment at M-pyrifera_M_contig77661:75..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77661.18271.1 ID=mRNA_M-pyrifera_M_contig77661.18271.1|Name=mRNA_M-pyrifera_M_contig77661.18271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig77661:75..374+ (Macrocystis pyrifera P11B4 male)
ATGGGACAATACTTTTTAATTGCCAATCAGAACAAACAGCAGTTCATTGA
TCCTTTCAGATTACCGGTAAGCGAAAAAATTTCAGCGCTGTTAAACAGTG
ATTTGATCAATACTCTGTTGCCCTATCTGATCGTTGGTTCGCAGAACAGA
CAGTATCTGAAGTTCAAAGAAGCCGGATATTATACACAGAAGTATCTGGG
AGCCTGGTATGGTGATCCTGTCGATTTACTGGGAGATTATGATGAGGAAG
AGCAGAGTTGGATTGTGCGGTCCGAGTATGAGAATATCAGTATAGAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77661:75..374+

>mRNA_M-pyrifera_M_contig77661.18271.1 ID=mRNA_M-pyrifera_M_contig77661.18271.1|Name=mRNA_M-pyrifera_M_contig77661.18271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig77661:75..374+ (Macrocystis pyrifera P11B4 male)
ATGGGACAATACTTTTTAATTGCCAATCAGAACAAACAGCAGTTCATTGA
TCCTTTCAGATTACCGGTAAGCGAAAAAATTTCAGCGCTGTTAAACAGTG
ATTTGATCAATACTCTGTTGCCCTATCTGATCGTTGGTTCGCAGAACAGA
CAGTATCTGAAGTTCAAAGAAGCCGGATATTATACACAGAAGTATCTGGG
AGCCTGGTATGGTGATCCTGTCGATTTACTGGGAGATTATGATGAGGAAG
AGCAGAGTTGGATTGTGCGGTCCGAGTATGAGAATATCAGTATAGAAATC
ATGGGACAATACTTTTTAATTGCCAATCAGAACAAACAGCAGTTCATTGA
TCCTTTCAGATTACCGGTAAGCGAAAAAATTTCAGCGCTGTTAAACAGTG
ATTTGATCAATACTCTGTTGCCCTATCTGATCGTTGGTTCGCAGAACAGA
CAGTATCTGAAGTTCAAAGAAGCCGGATATTATACACAGAAGTATCTGGG
AGCCTGGTATGGTGATCCTGTCGATTTACTGGGAGATTATGATGAGGAAG
AGCAGAGTTGGATTGTGCGGTCCGAGTATGAGAATATCAGTATAGAAATC
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