mRNA_M-pyrifera_M_contig77624.18266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77624.18266.1
Unique NamemRNA_M-pyrifera_M_contig77624.18266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A6G0XEY0_9STRA (Mur_ligase_M domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEY0_9STRA)

HSP 1 Score: 205 bits (521), Expect = 6.890e-60
Identity = 123/271 (45.39%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    1 FGYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTS---SVGFDETNSA-LAATAAGLAIK---RAEMMRQ-ITVARSVRAPCRLEAFEIGAGN---LVVLDTAHNADALRAMWTALQ 780
            FG   + F  +H+AGTNGKGSV+ K A AL+ +G++TGLF SPH+A +RER +VN EL +E+ +  +L T+FE    L IPATFFELTT+ +L HF+ ++ D VVLETGLGGRLDATN+V P+ +VITSIG DH  ILG TL +IA EKAGI+KP +P V+G +  +  +   A  + +P+   PP  +      F+ T+ A LAAT    + K   R ++  + +  A   R  CR E   +   N   +VVLD AHN  A   +   L+
Sbjct:   13 FGEPSKRFDTIHIAGTNGKGSVSWKLAKALQASGFKTGLFVSPHVACFRERIQVNSELISETQVEALLPTIFEKSAELKIPATFFELTTILALQHFAEEKVDCVVLETGLGGRLDATNIVLPVISVITSIGLDHTRILGSTLPEIAREKAGIIKPNIPVVIGPNCQQEVMEEHARLVGSPLTSLPPHPAYNDDYNFENTDVATLAATILNSSAKSKVRIDLQNESVRKALLSRPSCRFEEVHVRRNNQDVVVVLDVAHNMPAFERLLKLLE 283          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A5D6XL03_9STRA (Mur_ligase_M domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL03_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.260e-60
Identity = 129/281 (45.91%), Postives = 167/281 (59.43%), Query Frame = 1
Query:    1 FGYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAP-IHLSPPSTSSVGFDETNSALAATAAGLAIKRAEMMR-------------QITVARSVRAPCRLEAFEIGAGNL------VVLDTAHNADALRAMWTALQA 783
            FG     F VVHVAGTNGKGSV+ K A ALE AGYRTGLF SPH++S+RER +V+GEL +E  + + L  +F     L IPATFFELTT+ +L HF+ +  D VVLETGLGGRLDATN+V P  +VITSIGRDH  ILG T+ DIA EKAGI+KP VP ++G       +   A A+ AP + ++    + V FD  N+A+A  A     + A+                ++  A + R PCR +   I   N       +VLD AHN  A+  +   L+A
Sbjct:   90 FGDPAARFPVVHVAGTNGKGSVSFKLAKALERAGYRTGLFVSPHVSSFRERIQVDGELISEQQVCETLAEIFNISAQLRIPATFFELTTMLALQHFAKQGVDCVVLETGLGGRLDATNIVTPALSVITSIGRDHTRILGDTIADIAREKAGIMKPGVPVIVGPHVPLELMRGHAAAVRAPLVAVAVAGDAEVDFDAENTAIAREALVQLNRLAQTNSSSKSSLRVDLDSDRVASALAARPPCRFQVLHIVRPNAAERKVTIVLDVAHNEPAIERLAGLLRA 370          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: UPI000837C42F (bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Parachlamydia sp. C2 TaxID=1414722 RepID=UPI000837C42F)

HSP 1 Score: 201 bits (512), Expect = 1.120e-58
Identity = 119/259 (45.95%), Postives = 160/259 (61.78%), Query Frame = 1
Query:    7 YSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTSSVGFDETNSALAATAAGLAIKRAEMMRQITVARSVRA--PCRLEAFEIGAGNLVVLDTAHNADALRAMWTAL 777
            Y DRSF  +HVAGTNGKGSV TK A  LEHAGYR GL+TSPHL+ +RER R+N ++  E  I ++L  +F   EA  IPATFFELTT  +LL+F+ ++ D  VLETGLGGRLDATN+V PL +VITSI  DH  ILG +++ IA EKAGI+KP  P V+G       +   A  + +P       +S   F E  + L A A+   +     +   ++A+ + A  PCR E   +   + ++LD AHN D L  ++ A+
Sbjct:   35 YPDRSFHTIHVAGTNGKGSVVTKIAAGLEHAGYRVGLYTSPHLSCFRERIRINKQMIPEEAIEELLPYLFNLAEAEQIPATFFELTTFLALLYFAREKVDFAVLETGLGGRLDATNIVSPLLSVITSISLDHTDILGPSIESIAKEKAGIIKPSTPVVIGPRVPHSQIQLIAEQLQSPCIAVKEGSS---FFEEENRLIARASLQQLSSHFPLSSESIAKGLEAKQPCRFE--RVPGPHPIILDVAHNPDGLIHLFDAM 288          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A024USH5_9STRA (Mur_ligase_M domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USH5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.280e-58
Identity = 127/268 (47.39%), Postives = 166/268 (61.94%), Query Frame = 1
Query:   16 RSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIA----RANAIAAPIHLSPPSTSSVGFDETNSALAATAAGLAIKRAEMMRQITV-------ARSVRAPCRLEAFEIGA-GNLVVLDTAHNADALRAMWTALQA 783
            + F  +H+AGTNGKGSV+ K A ALE +G++TGLF SPH++ +RER +VNG L +E+ + D+L T+F+    L IPATFFELTT  +L HF+ +E D VVLETGLGGRLDATN+V P+ +VITSIG DH  ILG TL +IA EKAGI+KP VP V G +  +P V+     RANA  A ++ +P       F+  N+ LA  AA    +  +    I +       A   R PCR E  ++   G   VLD AHN  A   +   LQA
Sbjct:   40 KHFDTIHIAGTNGKGSVSWKLAKALESSGFKTGLFVSPHVSCFRERIQVNGNLISEAQLEDLLPTIFDKSTQLAIPATFFELTTALALQHFAREEVDCVVLETGLGGRLDATNIVTPVVSVITSIGLDHTSILGSTLPEIAREKAGIIKPSVPVVCGPNT-QPDVMREFAQRANAPIAFLNDTPRYADD--FNVENTDLATLAAETLNQSGKSKVHIKLESPLVQHALQSRPPCRFETVQVPHHGVTAVLDVAHNLPAFDRLLKLLQA 304          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A485LQH4_9STRA (Aste57867_24426 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQH4_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.340e-58
Identity = 125/275 (45.45%), Postives = 165/275 (60.00%), Query Frame = 1
Query:    1 FGYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTSSVG-FDETNSALAATAAGLAIKRAEMMRQ----------ITVARSVRAPCRLE---AFEIGAGNLVVLDTAHNADALRAMWTALQA 783
            FG     +  +HVAGTNGKGSV+ K A ALE +G++TGLF SPH++ +RER +VN  L +E+ +  +L  +F     L IPATFFELTT+ +L HF+ ++ D VVLETGLGGRLDATN+V P+ +VITSIG DH  ILG T+ +IA EKAGI+KP VP V+G S  R  +   A  + API   PPS +    +D  N+A+A  AA +  ++A+              +  A   R  CR E   A   G    VVLD AHN  A   +   LQ+
Sbjct:   35 FGAPATRYDTIHVAGTNGKGSVSWKLAKALEASGFKTGLFVSPHVSCFRERIQVNSALISEAQVEALLPQIFNQATRLNIPATFFELTTILALQHFAQEQVDCVVLETGLGGRLDATNIVTPVLSVITSIGLDHTRILGATIPEIAREKAGIMKPNVPVVIGPSTPRQVMEEHAALVGAPISFLPPSPAYADDYDVENTAVATLAAVVLNQQAQRSSAKVHIRMEAPAVVDALHSRPSCRFEHVAATHAGRSVEVVLDVAHNLPAFDRLLQLLQS 309          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: K3WA12_GLOUD (Mur_ligase_M domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA12_GLOUD)

HSP 1 Score: 202 bits (515), Expect = 6.070e-58
Identity = 126/273 (46.15%), Postives = 164/273 (60.07%), Query Frame = 1
Query:    1 FGYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSP-PSTSSVGFDETNSALAATA----------AGLAIKRAEM-MRQITVARSVRAPCRLEAFEIGAGN------LVVLDTAHNADALRAM 765
            FG     + VVHVAGTNGKGSV+ K A ALE +GY+TGLF SPH+A +RER +VNG L +E  + + L  +F     L IPATFFE+TT+ +  HF+ +  D VVLETGLGGRLDATN+V P  +VITSIG DHM ILG+T+ DIA EKAGI+KP VP V+G  A    +   A  + AP+   P  S  +  F+  N+A+A  A          AG +    ++  R++  A   R PCR + F I   N       +VLD AHN  A+  +
Sbjct:   94 FGDPASRYEVVHVAGTNGKGSVSYKIAKALERSGYKTGLFVSPHVACFRERIQVNGTLISEEQVCETLSEIFNISAQLRIPATFFEITTMLAFQHFAKENVDCVVLETGLGGRLDATNIVTPSLSVITSIGMDHMRILGNTVTDIAHEKAGIMKPHVPVVIGPHAPLEIMRDHATRLQAPLVQVPHDSAFTDDFNAENTAIAREAVVQLNELAHQAGKSELSVDLESRRVVSALESRPPCRFQVFHIVRPNSGERKVTIVLDVAHNPPAIEKL 366          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A1V9ZN13_9STRA (Folylpolyglutamate synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN13_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.110e-57
Identity = 125/273 (45.79%), Postives = 171/273 (62.64%), Query Frame = 1
Query:    4 GYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTS-SVGFDETNSALAATAAGLAIKR--AEMMRQITVARSV---------RAPCRLEAFEIGA--GNLVVLDTAHNADALRAMWTALQ 780
            G+  + F  +HVAGTNGKGSV+ K A ALE +GY+TGLF SPH+A +RER +VN  L  E+ +  +L  +F   E  GIPATFFELTT+ +L HF+A++ D VVLETGLGGRLD+TN+V P+ +VITSIG DH  ILG T+++IA EKAGI+KP VP V+G       +   A A+ +P+   P   + +  ++  NS +A  AA +A+ R   +   ++T+  +          R PCR   FE+ A  G  VVLD AHN  A + +   LQ
Sbjct:   36 GHPAKRFDTIHVAGTNGKGSVSWKLAKALEASGYKTGLFVSPHVACFRERIQVNSTLIPEAAVASLLPPLFALTEDRGIPATFFELTTMLALQHFAAEDVDCVVLETGLGGRLDSTNIVTPVLSVITSIGLDHTRILGSTIEEIAGEKAGIMKPSVPVVIGPQTPTKVMQQHAIAVGSPLVSVPARPAHATDYNAENSDVAFEAA-MALNRLHGQHKTKLTIDTTSSLVQKMLQSRPPCR---FEVVAHKGATVVLDVAHNMPAFKCLVRLLQ 304          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A6M1Z8V7_9BACT (Bifunctional protein FolC n=2 Tax=Candidatus Anoxychlamydiales bacterium TaxID=2705072 RepID=A0A6M1Z8V7_9BACT)

HSP 1 Score: 198 bits (504), Expect = 1.160e-57
Identity = 111/273 (40.66%), Postives = 167/273 (61.17%), Query Frame = 1
Query:   22 FGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTSSVGFDETNSALAATAAGL-AIKRAEMMRQITVARSVRAPCRLEAFEIGAGNLVVLDTAHNADALRAMWTALQAVGVNVEDVQVVLACSSDR 837
            F  +H+AGTNGKGSVATK A AL  +GY+T L+TSPH+  Y ER  +NG++ ++ D+  +L  +F+  + + I  +FFE+TTL + L+FS K+ D  ++ETGLGGRLDATN++ P+ ++ITSI  DH  ILG T D IA EKAGI+KP +P V+G  A   P+I +     + +++S     ++ +DE NS++A  A  + ++K       I  A  +R   R E F+      ++ D AHN DA + +  A++    N   V+VVL  S  +
Sbjct:   40 FKSIHIAGTNGKGSVATKIAEALSLSGYKTALYTSPHITEYEERVSINGKIISKKDVKVLLKKIFKFQKKIKIYLSFFEITTLLAFLYFSKKKVDFAIIETGLGGRLDATNIITPILSIITSISLDHTNILGETRDLIAFEKAGIIKPKIPVVIGRKANIEPIIKKTKRSKSELYISKKLKKNIFYDEENSSIALKALEVFSLKYPLKKSAIKKALKIRPEARFEIFKTFGPKAIIFDVAHNLDAFKELKKAIKLFFPN-NKVRVVLGFSKQK 311          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: A0A0U5CQQ1_9BACT (Putative folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Candidatus Protochlamydia naegleriophila TaxID=389348 RepID=A0A0U5CQQ1_9BACT)

HSP 1 Score: 198 bits (503), Expect = 2.750e-57
Identity = 117/261 (44.83%), Postives = 163/261 (62.45%), Query Frame = 1
Query:    7 YSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAP---IHLSPPSTSSVGFDETNSALAATAAGLAIKRAEMMRQITVARSVRA--PCRLEAFEIGAGNLVVLDTAHNADALRAMWTA 774
            + D +F  +HVAGTNGKGSV TK A AL+ +GYR GL+TSPHL  +RER R+N ++ +ES +  +L  +FE      IPATFFELTTL +L +F+ ++ D+ VLETGLGGRLDATN+V PL ++ITSI  DH  ILG T + IA EKAGI+K  +P ++G       ++  A+A  +P   +H   P      F+E N A+A TA    +K +  +    +A+ + A  PCR E  +      V+LD AHN D L+ ++ A
Sbjct:   35 FPDHAFPTIHVAGTNGKGSVVTKIAKALQESGYRVGLYTSPHLCCFRERIRINQDMISESSVETILPHLFELTTVHAIPATFFELTTLLALTYFAREKVDVAVLETGLGGRLDATNIVSPLLSIITSISLDHTDILGSTEEAIAKEKAGIIKSGIPVIIGPKTPHRQLLDIAHANNSPCIKVHSLSPL-----FEEENKAIAHTALNH-LKSSFKLPPEAIAKGLEAKQPCRFEVLQ--GSPAVILDVAHNPDGLQRLFQA 287          
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Match: T0QQ13_SAPDV (Mur_ligase_M domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QQ13_SAPDV)

HSP 1 Score: 198 bits (504), Expect = 3.300e-57
Identity = 125/264 (47.35%), Postives = 167/264 (63.26%), Query Frame = 1
Query:   22 FGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRERFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKECDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKAGILKPFVPAVLGASAARPPVIARANAIAAPIH-LSPPSTSSVGFDETNSALAATAA-GLAIKRAEMMRQIT-------VARSV--RAPCRLEAFEIGAGNLVVLDTAHNADALRAMWTALQ 780
            F  VHVAGTNGKGSV+ K A ALE +G++TGLF SPH++ +RER ++NGEL +E+D+   L T+F   E  GIPATFFELTT+ +L HF+A++ D VVLETGLGGRLDATN+V P+ +VITSIG DH  ILG T+ +IA EKAGI+KP VP V+G    +  +   A    +PI  ++P    +  ++  NS +A  AA  L I   +   ++T       VA+ +  R PCR E  +      VVLD AHN  A   +   L+
Sbjct:   42 FDTVHVAGTNGKGSVSWKLAKALEASGFKTGLFVSPHVSCFRERIQINGELISEADVETHLPTLFALTEDKGIPATFFELTTMLALQHFAAQDVDCVVLETGLGGRLDATNIVTPVLSVITSIGLDHTRILGSTIPEIAREKAGIMKPNVPVVVGPQTPQHIMQQHARNAQSPIVCVAPTPAHAKDYNAENSDVAFMAAVQLNILHGQHKTKLTLDTTSSAVAKCLASRPPCRFEVVKTPQAT-VVLDVAHNLPAFEKLLDLLE 304          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77624.18266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0XEY0_9STRA6.890e-6045.39Mur_ligase_M domain-containing protein n=1 Tax=Aph... [more]
A0A5D6XL03_9STRA8.260e-6045.91Mur_ligase_M domain-containing protein n=1 Tax=Pyt... [more]
UPI000837C42F1.120e-5845.95bifunctional folylpolyglutamate synthase/dihydrofo... [more]
A0A024USH5_9STRA1.280e-5847.39Mur_ligase_M domain-containing protein n=1 Tax=Aph... [more]
A0A485LQH4_9STRA1.340e-5845.45Aste57867_24426 protein n=1 Tax=Aphanomyces stella... [more]
K3WA12_GLOUD6.070e-5846.15Mur_ligase_M domain-containing protein n=1 Tax=Glo... [more]
A0A1V9ZN13_9STRA1.110e-5745.79Folylpolyglutamate synthase n=1 Tax=Achlya hypogyn... [more]
A0A6M1Z8V7_9BACT1.160e-5740.66Bifunctional protein FolC n=2 Tax=Candidatus Anoxy... [more]
A0A0U5CQQ1_9BACT2.750e-5744.83Putative folylpolyglutamate synthase/dihydrofolate... [more]
T0QQ13_SAPDV3.300e-5747.35Mur_ligase_M domain-containing protein n=2 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77624contigM-pyrifera_M_contig77624:2..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue6.8e-52
Seed eggNOG ortholog36331.EPrPI00000018823
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930,ko:K11754
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
KEGG ModuleM00126,M00841
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Folylpolyglutamate synthase. Source PGD
EggNOG OGs1MFJ1@121069,COG0285@1,KOG2525@2759
EC6.3.2.12,6.3.2.17
COG Functional cat.H
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size837
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.1882422-CDS-M-pyrifera_M_contig77624:1..6531622816677.1882422-CDS-M-pyrifera_M_contig77624:1..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77624 2..653 +
1692278113.8405068-CDS-M-pyrifera_M_contig77624:1..6531692278113.8405068-CDS-M-pyrifera_M_contig77624:1..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77624 2..653 +
1622816677.199691-CDS-M-pyrifera_M_contig77624:752..9371622816677.199691-CDS-M-pyrifera_M_contig77624:752..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77624 753..937 +
1692278113.8538206-CDS-M-pyrifera_M_contig77624:752..9371692278113.8538206-CDS-M-pyrifera_M_contig77624:752..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77624 753..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77624.18266.1prot_M-pyrifera_M_contig77624.18266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77624 2..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77624.18266.1

>prot_M-pyrifera_M_contig77624.18266.1 ID=prot_M-pyrifera_M_contig77624.18266.1|Name=mRNA_M-pyrifera_M_contig77624.18266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
FGYSDRSFGVVHVAGTNGKGSVATKCATALEHAGYRTGLFTSPHLASYRE
RFRVNGELATESDIVDVLGTVFEGCEALGIPATFFELTTLASLLHFSAKE
CDMVVLETGLGGRLDATNVVYPLATVITSIGRDHMGILGHTLDDIAAEKA
GILKPFVPAVLGASAARPPVIARANAIAAPIHLSPPSTSSVGFDETNSAL
AATAAGLAIKRAEMMRQITVARSVRAPCRLEAFEIGAGNLVVLDTAHNAD
ALRAMWTALQAVGVNVEDVQVVLACSSDR
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mRNA from alignment at M-pyrifera_M_contig77624:2..937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77624.18266.1 ID=mRNA_M-pyrifera_M_contig77624.18266.1|Name=mRNA_M-pyrifera_M_contig77624.18266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig77624:2..937+ (Macrocystis pyrifera P11B4 male)
TTTGGATATTCAGATCGCTCATTTGGTGTTGTGCATGTTGCTGGGACGAA TGGAAAAGGGTCTGTGGCGACAAAGTGTGCCACTGCATTGGAGCATGCTG GATATCGAACAGGGTTGTTCACCTCCCCGCACTTGGCATCCTATCGCGAG AGATTTCGGGTAAATGGAGAATTAGCCACAGAAAGTGACATTGTTGACGT GTTGGGGACTGTATTTGAAGGGTGTGAAGCACTAGGAATTCCAGCTACGT TTTTTGAACTGACTACACTTGCAAGCTTGTTACATTTCTCAGCAAAAGAA TGTGACATGGTGGTGTTGGAAACAGGATTGGGTGGAAGATTGGATGCAAC AAATGTTGTGTATCCATTGGCAACAGTGATCACAAGTATTGGTAGAGACC ATATGGGAATTCTCGGACATACTCTGGATGACATTGCAGCTGAGAAGGCA GGAATACTAAAACCTTTTGTCCCTGCCGTCCTTGGAGCATCAGCAGCACG TCCACCGGTCATCGCAAGAGCCAATGCAATCGCTGCTCCCATCCACCTCT CACCACCTTCCACATCATCAGTGGGATTTGACGAAACAAATTCCGCCCTT GCCGCAACTGCAGCTGGCTTAGCAATCAAGAGAGCAGAAATGATGCGCCA AAGTAGCAAGAAGAGATGGGTGGGCCAGGTGGGGAGGATTGGGGCTCCGC TGCGAAGGAGTGATCGAGAAGAACGGGTTGGTGTTGATGTCAAGGAATTA GTCACAGTGGCACGATCTGTTCGTGCGCCATGTCGCCTCGAAGCATTTGA GATTGGAGCAGGAAATCTTGTTGTTCTCGATACTGCACACAATGCAGATG CACTCAGAGCAATGTGGACCGCATTGCAAGCTGTTGGGGTAAACGTGGAA GACGTCCAAGTTGTGTTGGCGTGCTCGTCAGATCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77624:2..937+

>mRNA_M-pyrifera_M_contig77624.18266.1 ID=mRNA_M-pyrifera_M_contig77624.18266.1|Name=mRNA_M-pyrifera_M_contig77624.18266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig77624:2..937+ (Macrocystis pyrifera P11B4 male)
TTTGGATATTCAGATCGCTCATTTGGTGTTGTGCATGTTGCTGGGACGAA
TGGAAAAGGGTCTGTGGCGACAAAGTGTGCCACTGCATTGGAGCATGCTG
GATATCGAACAGGGTTGTTCACCTCCCCGCACTTGGCATCCTATCGCGAG
AGATTTCGGGTAAATGGAGAATTAGCCACAGAAAGTGACATTGTTGACGT
GTTGGGGACTGTATTTGAAGGGTGTGAAGCACTAGGAATTCCAGCTACGT
TTTTTGAACTGACTACACTTGCAAGCTTGTTACATTTCTCAGCAAAAGAA
TGTGACATGGTGGTGTTGGAAACAGGATTGGGTGGAAGATTGGATGCAAC
AAATGTTGTGTATCCATTGGCAACAGTGATCACAAGTATTGGTAGAGACC
ATATGGGAATTCTCGGACATACTCTGGATGACATTGCAGCTGAGAAGGCA
GGAATACTAAAACCTTTTGTCCCTGCCGTCCTTGGAGCATCAGCAGCACG
TCCACCGGTCATCGCAAGAGCCAATGCAATCGCTGCTCCCATCCACCTCT
CACCACCTTCCACATCATCAGTGGGATTTGACGAAACAAATTCCGCCCTT
GCCGCAACTGCAGCTGGCTTAGCAATCAAGAGAGCAGAAATGATGCGCCA
AATTTGGATATTCAGATCGCTCATTTGGTGTTGTGCATGTTGCTGGGACG
AATGGAAAAGGGTCTGTGGCGACAAAGTGTGCCACTGCATTGGAGCATGC
TGGATATCGAACAGGGTTGTTCACCTCCCCGCACTTGGCATCCTATCGCG
AGAGATTTCGGGTAAATGGAGAATTAGCCACAGAAAGTGACATTGTTGAC
GTGTTGGGGACTGTATTTGAAGGGTGTGAAGCACTAGGAATTCCAGCTAC
GTTTTTTGAACTGACTACACTTGCAAGCTTGTTACATTTCTCAGCAAAAG
AATGTGACATGGTGGTGTTGGAAACAGGATTGGGTGGAAGATTGGATGCA
ACAAATGTTGTGTATCCATTGGCAACAGTGATCACAAGTATTGGTAGAGA
CCATATGGGAATTCTCGGACATACTCTGGATGACATTGCAGCTGAGAAGG
CAGGAATACTAAAACCTTTTGTCCCTGCCGTCCTTGGAGCATCAGCAGCA
CGTCCACCGGTCATCGCAAGAGCCAATGCAATCGCTGCTCCCATCCACCT
CTCACCACCTTCCACATCATCAGTGGGATTTGACGAAACAAATTCCGCCC
TTGCCGCAACTGCAGCTGGCTTAGCAATCAAGAGAGCAGAAATGATGCGC
CAAATCACAGTGGCACGATCTGTTCGTGCGCCATGTCGCCTCGAAGCATT
TGAGATTGGAGCAGGAAATCTTGTTGTTCTCGATACTGCACACAATGCAG
ATGCACTCAGAGCAATGTGGACCGCATTGCAAGCTGTTGGGGTAAACGTG
GAAGACGTCCAAGTTGTGTTGGCGTGCTCGTCAGATCGCTCACAGTGGCA
CGATCTGTTCGTGCGCCATGTCGCCTCGAAGCATTTGAGATTGGAGCAGG
AAATCTTGTTGTTCTCGATACTGCACACAATGCAGATGCACTCAGAGCAA
TGTGGACCGCATTGCAAGCTGTTGGGGTAAACGTGGAAGACGTCCAAGTT
GTGTTGGCGTGCTCGTCAGATCGC
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