mRNA_M-pyrifera_M_contig77606.18261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77606.18261.1
Unique NamemRNA_M-pyrifera_M_contig77606.18261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: D8LMV2_ECTSI (GSH-dependent dehydroascorbate reductase, monomeric enzymes catalyzing the reduction of DHA into asc n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.260e-23
Identity = 42/50 (84.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTLSMKDNPALA 150
            PDWLVEDYEGQMPCLVDS+EAYT+S+NIVDY+EYFYPEPTLS+KD+ A+A
Sbjct:  155 PDWLVEDYEGQMPCLVDSKEAYTESANIVDYVEYFYPEPTLSIKDSDAVA 204
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A835ZA14_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA14_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.420e-15
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTLSMKDNPALAAQV 159
            PDWLVED+EG+MPCLV   EAYT+SS IV YIEYF+PEPTLS +   A  A+ 
Sbjct:  151 PDWLVEDHEGKMPCLVHDGEAYTESSEIVRYIEYFFPEPTLSPQGASAQMAEA 203
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A7S2SR18_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR18_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-11
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTLSMKDNPALAAQ 156
            P WLV+ Y+G+MPCLV   EAYT+SS+IVDY+ +F+ EP L+    P  AAQ
Sbjct:   50 PQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAA---PMAAAQ 98
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A7S2SQ66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ66_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.090e-11
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTLSMKDNPALAAQ 156
            P WLV+ Y+G+MPCLV   EAYT+SS+IVDY+ +F+ EP L+    P  AAQ
Sbjct:  113 PQWLVDGYDGKMPCLVHDGEAYTESSHIVDYLNFFFQEPKLAA---PMAAAQ 161
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A7S3XL57_HETAK (Glutathione dehydrogenase (ascorbate) (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL57_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 3.710e-8
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTL 123
            P WL + YEG+MPCLV   EAYT+SS + +Y+++F+P+  L
Sbjct:  149 PSWLADHYEGKMPCLVHKGEAYTESSVVAEYLDFFFPDVPL 189
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A448ZBA4_9STRA (Glutathione dehydrogenase (ascorbate) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBA4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.610e-6
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYP 111
            P WL+E YEG+MPCL   +EAY +S+ I  Y++YF+P
Sbjct:  142 PGWLLEYYEGKMPCLRHKKEAYVESNVIAAYLDYFFP 178
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: B7G1X6_PHATC (Glutathione dehydrogenase (ascorbate) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1X6_PHATC)

HSP 1 Score: 52.0 bits (123), Expect = 2.690e-6
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTL 123
            P WL E YEG++P L   +E Y +S  I DY+++F+P+P+L
Sbjct:   87 PAWLTEYYEGKLPALRHRKECYVESDVIADYLDFFFPDPSL 127
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BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Match: A0A7S4ARC1_9STRA (Glutathione dehydrogenase (ascorbate) n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ARC1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.060e-6
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYP 111
            P WL+E YEG++PCL   +EAY +S+ I  Y++YF+P
Sbjct:  119 PAWLMEYYEGKLPCLKHKKEAYVESNVIAAYLDYFFP 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77606.18261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LMV2_ECTSI1.260e-2384.00GSH-dependent dehydroascorbate reductase, monomeri... [more]
A0A835ZA14_9STRA1.420e-1566.04Glutathione dehydrogenase (ascorbate) n=1 Tax=Trib... [more]
A0A7S2SR18_9STRA2.800e-1155.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQ66_9STRA5.090e-1155.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XL57_HETAK3.710e-851.22Glutathione dehydrogenase (ascorbate) (Fragment) n... [more]
A0A448ZBA4_9STRA1.610e-654.05Glutathione dehydrogenase (ascorbate) n=1 Tax=Pseu... [more]
B7G1X6_PHATC2.690e-646.34Glutathione dehydrogenase (ascorbate) n=2 Tax=Phae... [more]
A0A7S4ARC1_9STRA4.060e-651.35Glutathione dehydrogenase (ascorbate) n=2 Tax=Pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77606contigM-pyrifera_M_contig77606:682..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.9e-19
Seed eggNOG ortholog2880.D8LMV2
KEGG rclassRC00011,RC00092,RC00948
KEGG koko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.chloride channel activity
EggNOG OGsKOG1422@1,KOG1422@2759
Ec32 ortholog descriptionGSH-dependent dehydroascorbate reductase
Ec32 orthologEc-02_003740.1
EC1.8.5.1,2.5.1.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.011204-CDS-M-pyrifera_M_contig77606:681..8581622816677.011204-CDS-M-pyrifera_M_contig77606:681..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77606 682..858 -
1692278113.7571-CDS-M-pyrifera_M_contig77606:681..8581692278113.7571-CDS-M-pyrifera_M_contig77606:681..858Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77606 682..858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77606.18261.1prot_M-pyrifera_M_contig77606.18261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77606 682..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77606.18261.1

>prot_M-pyrifera_M_contig77606.18261.1 ID=prot_M-pyrifera_M_contig77606.18261.1|Name=mRNA_M-pyrifera_M_contig77606.18261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
PDWLVEDYEGQMPCLVDSREAYTDSSNIVDYIEYFYPEPTLSMKDNPALA
AQVTKQRA*
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mRNA from alignment at M-pyrifera_M_contig77606:682..858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77606.18261.1 ID=mRNA_M-pyrifera_M_contig77606.18261.1|Name=mRNA_M-pyrifera_M_contig77606.18261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig77606:682..858- (Macrocystis pyrifera P11B4 male)
CCGGACTGGCTAGTGGAGGACTACGAGGGGCAGATGCCTTGCCTCGTCGA
TAGCCGTGAGGCGTACACGGACTCCTCGAACATCGTGGACTACATCGAGT
ACTTCTACCCTGAGCCCACCCTGAGCATGAAGGACAACCCGGCCCTCGCG
GCACAGGTGACAAAACAGCGAGCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77606:682..858-

>mRNA_M-pyrifera_M_contig77606.18261.1 ID=mRNA_M-pyrifera_M_contig77606.18261.1|Name=mRNA_M-pyrifera_M_contig77606.18261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig77606:682..858- (Macrocystis pyrifera P11B4 male)
CCGGACTGGCTAGTGGAGGACTACGAGGGGCAGATGCCTTGCCTCGTCGA
TAGCCGTGAGGCGTACACGGACTCCTCGAACATCGTGGACTACATCGAGT
ACTTCTACCCTGAGCCCACCCTGAGCATGAAGGACAACCCGGCCCTCGCG
GCACAGGTGACAAAACAGCGAGCGTAACCGGACTGGCTAGTGGAGGACTA
CGAGGGGCAGATGCCTTGCCTCGTCGATAGCCGTGAGGCGTACACGGACT
CCTCGAACATCGTGGACTACATCGAGTACTTCTACCCTGAGCCCACCCTG
AGCATGAAGGACAACCCGGCCCTCGCGGCACAGGTGACAAAACAGCGAGC
GTAA
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