mRNA_M-pyrifera_M_contig77525.18246.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77525.18246.1
Unique NamemRNA_M-pyrifera_M_contig77525.18246.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A6B1B1L3_9ACTN (Amidohydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B1L3_9ACTN)

HSP 1 Score: 257 bits (656), Expect = 9.950e-83
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPAGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MR+GFKVFDADAHV+YPADLWQTYLPE+FKHRLDR+ PAGL+TYNPV VDGR++QH  SLYGQFQKAI WT EDM  +YGE+   GFTGDRVA +LAIDG+D CVIYGPEYDMWLAGIDPELQAAM RAYN WGADMRE+S GRV
Sbjct:    1 MRHGFKVFDADAHVVYPADLWQTYLPERFKHRLDRRNPAGLETYNPVLVDGRYSQHDVSLYGQFQKAINWTYEDMVAQYGELATDGFTGDRVARALAIDGVDCCVIYGPEYDMWLAGIDPELQAAMARAYNHWGADMREASDGRV 145          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A7Y2GK32_9ACTN (Amidohydrolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GK32_9ACTN)

HSP 1 Score: 250 bits (638), Expect = 5.840e-80
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPAGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MRNG+KVFDAD+HVIYPADLW TYL  KF+ R+ R++PAGLDTYNPV VDGRW+QH TSLYGQFQKAIGWT EDM E+YG+IV LGFTGDRVA++  +DGID  VIYGPEYD+WL GIDPELQAAM RAYNRWG +MRE+SGGRV
Sbjct:    1 MRNGYKVFDADSHVIYPADLWSTYLDPKFRDRITRRSPAGLDTYNPVVVDGRWSQHDTSLYGQFQKAIGWTAEDMIEQYGDIVTLGFTGDRVAKAWDVDGIDVGVIYGPEYDLWLDGIDPELQAAMVRAYNRWGQEMRETSGGRV 145          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A7K1CZA3_9ACTN (Amidohydrolase family protein n=4 Tax=root TaxID=1 RepID=A0A7K1CZA3_9ACTN)

HSP 1 Score: 236 bits (601), Expect = 2.780e-74
Identity = 105/145 (72.41%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPAGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            M+ GFK+FDADAHVIYPADLW  YL +K++ R+ RKAP G D YNPVTVDGRW+QH TS+YG FQKAI WTTEDM  +YG++V  GFTGDRVA++L ++G+D  VIYGPEYDMWL GIDPELQAAM RAYNRWGA+MRE SGG+V
Sbjct:    9 MKRGFKIFDADAHVIYPADLWPRYLDQKYRDRIGRKAPPGFDHYNPVTVDGRWSQHPTSVYGNFQKAINWTTEDMVAQYGDMVIEGFTGDRVAKALEVEGVDVMVIYGPEYDMWLDGIDPELQAAMARAYNRWGAEMREISGGKV 153          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A6J7IBL2_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J7IBL2_9ZZZZ)

HSP 1 Score: 231 bits (590), Expect = 8.810e-73
Identity = 104/146 (71.23%), Postives = 117/146 (80.14%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPA-GLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MRNGFKVFDADAHV+YP DLW  YL +K KHR+  K P  G +TYNPVTVDG+WTQH T LYG+FQ+ + WT +DM  KYG  V  GF GD VAE+LA+DGID CVIYGPEYDMW  GIDPE+QAAM RAYNRWGADMRE SGGR+
Sbjct:    1 MRNGFKVFDADAHVVYPRDLWSRYLDDKHKHRVGTKQPMPGFETYNPVTVDGKWTQHPTVLYGRFQELMDWTADDMMAKYGACVTTGFRGDSVAEALAVDGIDLCVIYGPEYDMWFEGIDPEMQAAMARAYNRWGADMREISGGRI 146          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A537Z8I9_9ACTN (Amidohydro-rel domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537Z8I9_9ACTN)

HSP 1 Score: 224 bits (570), Expect = 6.010e-71
Identity = 101/146 (69.18%), Postives = 119/146 (81.51%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPAGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGE-IVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MR+GF+VFDADAHV+YP DLW  +L E+ +HR+ R+ PAGL+ YNPVTVDGRW+QH TSLYGQFQ+AI WT +DM  KYGE IV  GFTGDRVA +L ++G+D  V+YGPEYDMWL GIDPELQAAM RAYN W  +MRE S GRV
Sbjct:    1 MRDGFRVFDADAHVVYPTDLWDRFLDERHRHRIGRRNPAGLEHYNPVTVDGRWSQHPTSLYGQFQQAINWTAQDMIAKYGEDIVMNGFTGDRVARALELEGVDLMVVYGPEYDMWLDGIDPELQAAMARAYNHWSEEMREQSDGRV 146          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: UPI001E49506C (amidohydrolase n=2 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E49506C)

HSP 1 Score: 221 bits (562), Expect = 1.490e-68
Identity = 99/146 (67.81%), Postives = 120/146 (82.19%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPA-GLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            M+NGFKVFDADAHVIYP D+WQ YLPE+F+ R+  + P  G + YNPVTVDG+W+QH TSLYG+FQ+ I WT +DM  K+G+ V  GF+GD VA++L IDGID  VIYGPEYD+W+ GIDPELQAAM RAYN+WGADMRE+SG RV
Sbjct:    1 MKNGFKVFDADAHVIYPKDMWQRYLPERFRDRIGLRQPIEGWEAYNPVTVDGKWSQHDTSLYGRFQRYIDWTADDMIAKFGDCVTRGFSGDAVADALQIDGIDLSVIYGPEYDLWVEGIDPELQAAMVRAYNQWGADMREASGKRV 146          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A538LC26_9ACTN (Amidohydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LC26_9ACTN)

HSP 1 Score: 215 bits (547), Expect = 2.490e-66
Identity = 101/147 (68.71%), Postives = 117/147 (79.59%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPA-GLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLG-FTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MR+GFKVFDADAHVIYP DLW  +L E++  R+  + P  G +TYNPVTVDGRWTQH T LYGQFQK I WT +DM  KYGE + LG FTG+RVA +L  DGID  VIYGPEYD+W  GIDP++QAAM RAYNRWGA+MRE+SGGRV
Sbjct:    1 MRHGFKVFDADAHVIYPVDLWPRFLDERYVQRMGTRQPVPGFETYNPVTVDGRWTQHDTILYGQFQKYIDWTKDDMIAKYGEELVLGGFTGERVASALQHDGIDLSVIYGPEYDLWFDGIDPDMQAAMVRAYNRWGAEMREASGGRV 147          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A7Y5UFX7_9ACTN (Amidohydrolase n=3 Tax=Streptomycetaceae bacterium TaxID=2021369 RepID=A0A7Y5UFX7_9ACTN)

HSP 1 Score: 209 bits (532), Expect = 5.100e-64
Identity = 100/147 (68.03%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPA-GLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYG-EIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MR+G +VFDAD HV+YP DLWQ +L   F+ R+ R APA G++T NP+TVDGR+TQH T LYG+FQ+AIGWTTEDM  KYG ++V  GFTGDRVA +LA++GID  V+YGPE+DMW  GIDP LQAAM RAYNRWGA+MRE+SGGRV
Sbjct:    1 MRDGLRVFDADCHVVYPPDLWQRHLDPAFRDRV-RPAPAPGIETVNPLTVDGRYTQHPTILYGRFQRAIGWTTEDMIAKYGPDLVHGGFTGDRVAAALAVEGIDIGVVYGPEFDMWPDGIDPALQAAMARAYNRWGAEMREASGGRV 146          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A7Y6E1X0_9ACTN (Uncharacterized protein n=1 Tax=Streptomycetaceae bacterium TaxID=2021369 RepID=A0A7Y6E1X0_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 2.060e-62
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAP-AGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGE-IVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNR 396
            MRNGFKVFDADAHVIYP DLW  +L +K   R  R+ P    DTYNPVTVDGRWTQH T +YG+FQ+AI WTT+DMR  YG+ ++  GFTGDRVA +LA DGID  VIYGPEYDMW  G+DPELQAAM RAYNR
Sbjct:    1 MRNGFKVFDADAHVIYPRDLWTRFLDKKHTQRFGRRQPFPEFDTYNPVTVDGRWTQHDTIVYGRFQEAINWTTDDMRRIYGDDLLANGFTGDRVAAALARDGIDVAVIYGPEYDMWFDGVDPELQAAMARAYNR 134          
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Match: A0A524NIY5_9DELT (Amidohydrolase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NIY5_9DELT)

HSP 1 Score: 201 bits (511), Expect = 6.360e-61
Identity = 89/146 (60.96%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    1 MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAP-AGLDTYNPVTVDGRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDGIDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV 435
            MR+GF+VFDADAHV+ P DLW+ +L  +++HR+  + P  G+D + PVTVDGR+TQ   +LYG+ Q+A+ WTTE MREKYG +VD GF G  VA SLA++G+D CV+YGP YDMW+ GIDP+LQA M RAYNRW  +MRE+SGGRV
Sbjct:    1 MRDGFRVFDADAHVVEPRDLWERFLDARYRHRVSWRQPFEGMDRFRPVTVDGRYTQSHKTLYGRQQEAVRWTTEAMREKYGAVVDRGFDGASVAASLAVEGVDVCVLYGPGYDMWVDGIDPDLQAGMARAYNRWAEEMRETSGGRV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77525.18246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1B1L3_9ACTN9.950e-8380.69Amidohydrolase n=1 Tax=Acidimicrobiaceae bacterium... [more]
A0A7Y2GK32_9ACTN5.840e-8077.93Amidohydrolase n=1 Tax=Acidimicrobiales bacterium ... [more]
A0A7K1CZA3_9ACTN2.780e-7472.41Amidohydrolase family protein n=4 Tax=root TaxID=1... [more]
A0A6J7IBL2_9ZZZZ8.810e-7371.23Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A537Z8I9_9ACTN6.010e-7169.18Amidohydro-rel domain-containing protein n=1 Tax=A... [more]
UPI001E49506C1.490e-6867.81amidohydrolase n=2 Tax=Rhabdothermincola sp. EGI L... [more]
A0A538LC26_9ACTN2.490e-6668.71Amidohydrolase n=1 Tax=Actinomycetia bacterium Tax... [more]
A0A7Y5UFX7_9ACTN5.100e-6468.03Amidohydrolase n=3 Tax=Streptomycetaceae bacterium... [more]
A0A7Y6E1X0_9ACTN2.060e-6269.40Uncharacterized protein n=1 Tax=Streptomycetaceae ... [more]
A0A524NIY5_9DELT6.360e-6160.96Amidohydrolase n=1 Tax=Myxococcales bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77525contigM-pyrifera_M_contig77525:1..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog1192034.CAP_2018
Preferred namebarH
KEGG koko:K07045
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Amidohydrolase
EggNOG OGs1N0C7@1224,2X34D@28221,2YU7H@29,437UX@68525,COG2159@1,COG2159@2
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816676.105123-CDS-M-pyrifera_M_contig77525:0..4351622816676.105123-CDS-M-pyrifera_M_contig77525:0..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77525 1..435 -
1692278113.1251073-CDS-M-pyrifera_M_contig77525:0..4351692278113.1251073-CDS-M-pyrifera_M_contig77525:0..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77525 1..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77525.18246.1prot_M-pyrifera_M_contig77525.18246.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77525 1..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77525.18246.1

>prot_M-pyrifera_M_contig77525.18246.1 ID=prot_M-pyrifera_M_contig77525.18246.1|Name=mRNA_M-pyrifera_M_contig77525.18246.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MRNGFKVFDADAHVIYPADLWQTYLPEKFKHRLDRKAPAGLDTYNPVTVD
GRWTQHKTSLYGQFQKAIGWTTEDMREKYGEIVDLGFTGDRVAESLAIDG
IDFCVIYGPEYDMWLAGIDPELQAAMTRAYNRWGADMRESSGGRV
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mRNA from alignment at M-pyrifera_M_contig77525:1..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77525.18246.1 ID=mRNA_M-pyrifera_M_contig77525.18246.1|Name=mRNA_M-pyrifera_M_contig77525.18246.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig77525:1..435- (Macrocystis pyrifera P11B4 male)
ATGCGCAACGGATTCAAGGTCTTCGACGCCGACGCCCACGTCATCTATCC CGCCGATCTCTGGCAGACCTATCTCCCCGAGAAGTTCAAGCACCGCCTCG ACCGCAAGGCGCCGGCCGGACTCGACACCTACAACCCCGTCACCGTCGAC GGCCGTTGGACCCAGCACAAGACCTCTCTCTACGGCCAGTTCCAGAAGGC GATCGGCTGGACCACCGAGGACATGCGTGAGAAGTACGGCGAGATCGTCG ACCTCGGCTTCACCGGCGACCGCGTCGCCGAGTCGCTCGCCATCGACGGC ATCGACTTCTGTGTGATCTACGGCCCCGAATACGACATGTGGCTCGCCGG CATCGACCCCGAGCTCCAGGCCGCCATGACCCGGGCCTACAACCGTTGGG GCGCCGACATGCGCGAGTCCTCCGGTGGACGCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77525:1..435-

>mRNA_M-pyrifera_M_contig77525.18246.1 ID=mRNA_M-pyrifera_M_contig77525.18246.1|Name=mRNA_M-pyrifera_M_contig77525.18246.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig77525:1..435- (Macrocystis pyrifera P11B4 male)
ATGCGCAACGGATTCAAGGTCTTCGACGCCGACGCCCACGTCATCTATCC
CGCCGATCTCTGGCAGACCTATCTCCCCGAGAAGTTCAAGCACCGCCTCG
ACCGCAAGGCGCCGGCCGGACTCGACACCTACAACCCCGTCACCGTCGAC
GGCCGTTGGACCCAGCACAAGACCTCTCTCTACGGCCAGTTCCAGAAGGC
GATCGGCTGGACCACCGAGGACATGCGTGAGAAGTACGGCGAGATCGTCG
ACCTCGGCTTCACCGGCGACCGCGTCGCCGAGTCGCTCGCCATCGACGGC
ATCGACTTCTGTGTGATCTACGGCCCCGAATACGACATGTGGCTCGCCGG
CATCGACCCCGAGCTCCAGGCCGCCATGACCCGGGCCTACAACCGTTGGG
GCGCCGACATGCGCGAGTCCTCCGGTGGACGCGTCATGCGCAACGGATTC
AAGGTCTTCGACGCCGACGCCCACGTCATCTATCCCGCCGATCTCTGGCA
GACCTATCTCCCCGAGAAGTTCAAGCACCGCCTCGACCGCAAGGCGCCGG
CCGGACTCGACACCTACAACCCCGTCACCGTCGACGGCCGTTGGACCCAG
CACAAGACCTCTCTCTACGGCCAGTTCCAGAAGGCGATCGGCTGGACCAC
CGAGGACATGCGTGAGAAGTACGGCGAGATCGTCGACCTCGGCTTCACCG
GCGACCGCGTCGCCGAGTCGCTCGCCATCGACGGCATCGACTTCTGTGTG
ATCTACGGCCCCGAATACGACATGTGGCTCGCCGGCATCGACCCCGAGCT
CCAGGCCGCCATGACCCGGGCCTACAACCGTTGGGGCGCCGACATGCGCG
AGTCCTCCGGTGGACGCGTC
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