mRNA_M-pyrifera_M_contig77472.18238.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77472.18238.1
Unique NamemRNA_M-pyrifera_M_contig77472.18238.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: UPI001E1DD0C6 (uncharacterized protein LOC123555330 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD0C6)

HSP 1 Score: 72.0 bits (175), Expect = 2.340e-12
Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   10 CASLDPPPNGKITCSKTSTGLQRCKFHCDVGYYPFNTNHPMKTECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCVETS---ETETCNTKECP 357
            C ++  P +G I  ++   G ++ ++ CD GY   N       EC I G W+    EC ++  ++  W  +SSCS++C  GTR+R R    A    +E+ C E     E E+CN + CP
Sbjct:  133 CVNVTVPDHGTILGNQREVG-KKIRYKCDKGYKEKNATRATVAECLITGNWSASA-ECHKINYTWATWMDWSSCSLSCDSGTRTRARICSIASENLSEELCQEGDNGYEKESCNEQNCP 249          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: A0A6P8I8Z5_ACTTE (A disintegrin and metalloproteinase with thrombospondin motifs adt-1-like isoform X1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I8Z5_ACTTE)

HSP 1 Score: 62.0 bits (149), Expect = 9.530e-9
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query:  136 TECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            T C +DGKW++              WK +S C VTCGGG++SRTR   +  P      CV E SET+ C TK+CP
Sbjct: 1032 TLCPVDGKWSD--------------WKPWSPCPVTCGGGSQSRTRSCTNPAPANGGKDCVGENSETQECGTKQCP 1092          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: UPI001E1DEF80 (SCO-spondin-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEF80)

HSP 1 Score: 60.8 bits (146), Expect = 2.440e-8
Identity = 41/113 (36.28%), Postives = 54/113 (47.79%), Query Frame = 1
Query:   49 CSKTSTGLQRCKFH-CDVGYY-------PFNTNHPMKT-ECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            C++T    +R +F  CD  YY       P++      T EC +DG W              K W S+S+C+VTCGGGTR R+R+ +     G E  C      TE CNT ECP
Sbjct: 1114 CTRTCGTGERQRFRDCDGPYYGGANCTGPWDEQETCNTHECPVDGVW--------------KEWASWSACNVTCGGGTRWRSRDCEGPFYGGAE--CPGHNMSTEACNTHECP 1210          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: A0A6P8I911_ACTTE (uncharacterized protein LOC116297111 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I911_ACTTE)

HSP 1 Score: 60.5 bits (145), Expect = 3.320e-8
Identity = 39/117 (33.33%), Postives = 54/117 (46.15%), Query Frame = 1
Query:   43 ITCSKTSTGLQRCKFHCDVGYYPFN-----TNHPMKTE------CRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            I+CS T  G  + +        P N     +  P ++       C +DGKW++              WK +SSCSVTCGGG++SRTR   +  P      CV E+SET+ C    CP
Sbjct: 1127 ISCSVTCGGGSQSRTRTCTNPAPVNGGADCSGDPSESRVCRANPCPVDGKWSD--------------WKGWSSCSVTCGGGSQSRTRTCTNPAPANGGKACVGESSETQACGATLCP 1229          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: UPI00148A37E8 (A disintegrin and metalloproteinase with thrombospondin motifs adt-1 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A37E8)

HSP 1 Score: 60.1 bits (144), Expect = 4.530e-8
Identity = 37/111 (33.33%), Postives = 48/111 (43.24%), Query Frame = 1
Query:   28 PPNGKITCSKTSTGLQRCKFHCDVGYYPFNTNHPMKTECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            P  G   CS +S+  Q C  H                 C IDG W               +W S+ +CSVTCGGG++SRTR   +  P      CV  TS +++CNT  CP
Sbjct: 1275 PQYGGSACSGSSSSSQSCNTH----------------NCPIDGNWA--------------SWGSYGACSVTCGGGSQSRTRTCTNPAPQYLGANCVGSTSSSQSCNTHNCP 1355          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: A0A812LZC4_9DINO (Hmcn1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LZC4_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 7.970e-8
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query:  196 CSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDF-CVETSETETCNTKECP 357
            C Y +W  +S CS TCGGG+R RTR VK+    G +     E  +TE CNTKECP
Sbjct:  184 CEYNDWGKWSQCSETCGGGSRKRTRTVKTKAQNGGKACEAAEKKQTEECNTKECP 238          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: UPI001E1DDF5D (fibronectin-like isoform X1 n=5 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDF5D)

HSP 1 Score: 58.9 bits (141), Expect = 1.160e-7
Identity = 36/105 (34.29%), Postives = 48/105 (45.71%), Query Frame = 1
Query:   46 TCSKTSTGLQRCKFHCDVGYYPFNTNHPMKTECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            TCS   T     +  C   Y   +TN      C ++G W               +W  +S CSVTCGGGT+SR+R   S  P    D C   +S+T++CNT  CP
Sbjct:  140 TCSVDGTSTTGFRCQCSAPYV-IDTN-----SCVVNGNWG--------------SWSGWSVCSVTCGGGTQSRSRNCDSPQPQNGGDVCSGNSSQTQSCNTNGCP 224          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: A0A194AK77_PINFU (Uncharacterized protein n=1 Tax=Pinctada fucata TaxID=50426 RepID=A0A194AK77_PINFU)

HSP 1 Score: 57.4 bits (137), Expect = 1.360e-7
Identity = 31/94 (32.98%), Postives = 48/94 (51.06%), Query Frame = 1
Query:  115 NTNHPMKTECRIDG-KWT-----EGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGT-------EDFCVETSETETCNTKECP 357
            N N   K  C  +G +W+     +    C + +C ++ W   +SCS TCGGG++ + R  KS +P GT        D C + ++TE CN + CP
Sbjct:   25 NRNDCQKINCIPNGLEWSVKNCAKTCNYCNKTKCFFEEWSDLTSCSKTCGGGSKQQIRLPKSVVPAGTLLDHLKNVDDCWKDTQTEDCNVQPCP 118          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: K1RMC1_CRAGI (Hemicentin-1 n=4 Tax=Crassostrea gigas TaxID=29159 RepID=K1RMC1_CRAGI)

HSP 1 Score: 58.5 bits (140), Expect = 1.500e-7
Identity = 36/111 (32.43%), Postives = 47/111 (42.34%), Query Frame = 1
Query:   28 PPNGKITCSKTSTGLQRCKFHCDVGYYPFNTNHPMKTECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-ETSETETCNTKECP 357
            P  G   C  TST  Q C  H                 C IDG+WT              +W S+ SCSV+CGGG++SR+R   +  P      C   +S ++ CNT  CP
Sbjct:  322 PQYGGANCPSTSTSSQSCNTH----------------NCPIDGQWT--------------SWGSWGSCSVSCGGGSQSRSRSCTNPAPQYGGSACPGSSSASQACNTHNCP 402          
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Match: A0A8J1UWZ0_OWEFU (Ofus.G21736 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UWZ0_OWEFU)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-7
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 1
Query:  139 ECRIDGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGTEDFCV-------ETSETET--CNTKECP 357
            EC IDG W++              W +F SCS TCGGGT++R+R   +  P    D C+       ++SETE+  CNT ECP
Sbjct:  259 ECPIDGAWSD--------------WSAFGSCSTTCGGGTKTRSRSCDTPAPDHGGDACLAADGETRQSSETESDDCNTDECP 326          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77472.18238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1DD0C62.340e-1231.93uncharacterized protein LOC123555330 n=1 Tax=Merce... [more]
A0A6P8I8Z5_ACTTE9.530e-942.67A disintegrin and metalloproteinase with thrombosp... [more]
UPI001E1DEF802.440e-836.28SCO-spondin-like n=1 Tax=Mercenaria mercenaria Tax... [more]
A0A6P8I911_ACTTE3.320e-833.33uncharacterized protein LOC116297111 n=1 Tax=Actin... [more]
UPI00148A37E84.530e-833.33A disintegrin and metalloproteinase with thrombosp... [more]
A0A812LZC4_9DINO7.970e-850.91Hmcn1 protein n=1 Tax=Symbiodinium necroappetens T... [more]
UPI001E1DDF5D1.160e-734.29fibronectin-like isoform X1 n=5 Tax=Mercenaria mer... [more]
A0A194AK77_PINFU1.360e-732.98Uncharacterized protein n=1 Tax=Pinctada fucata Ta... [more]
K1RMC1_CRAGI1.500e-732.43Hemicentin-1 n=4 Tax=Crassostrea gigas TaxID=29159... [more]
A0A8J1UWZ0_OWEFU2.000e-739.02Ofus.G21736 protein n=1 Tax=Owenia fusiformis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77472contigM-pyrifera_M_contig77472:112..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog10228.TriadP61837
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
EggNOG free text desc.serine-type endopeptidase inhibitor activity
EggNOG OGs38FW7@33154,3BEQ3@33208,KOG3539@1,KOG3539@2759
COG Functional cat.W
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.5458229-CDS-M-pyrifera_M_contig77472:111..4681622816675.5458229-CDS-M-pyrifera_M_contig77472:111..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77472 112..468 +
1692278112.7887676-CDS-M-pyrifera_M_contig77472:111..4681692278112.7887676-CDS-M-pyrifera_M_contig77472:111..468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77472 112..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77472.18238.1prot_M-pyrifera_M_contig77472.18238.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77472 112..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77472.18238.1

>prot_M-pyrifera_M_contig77472.18238.1 ID=prot_M-pyrifera_M_contig77472.18238.1|Name=mRNA_M-pyrifera_M_contig77472.18238.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
AAPCASLDPPPNGKITCSKTSTGLQRCKFHCDVGYYPFNTNHPMKTECRI
DGKWTEGVPECVELQCSYKNWKSFSSCSVTCGGGTRSRTREVKSAIPPGT
EDFCVETSETETCNTKECP
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mRNA from alignment at M-pyrifera_M_contig77472:112..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77472.18238.1 ID=mRNA_M-pyrifera_M_contig77472.18238.1|Name=mRNA_M-pyrifera_M_contig77472.18238.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig77472:112..468+ (Macrocystis pyrifera P11B4 male)
GCAGCACCATGTGCATCACTTGATCCACCACCAAATGGCAAGATTACTTG TTCCAAGACTAGTACTGGCCTCCAACGATGCAAGTTTCACTGTGACGTGG GATACTATCCATTCAACACAAACCATCCAATGAAGACAGAGTGTCGCATT GATGGGAAATGGACAGAAGGGGTTCCTGAATGTGTGGAATTACAATGCTC ATACAAGAACTGGAAGTCGTTCAGTTCTTGTTCTGTCACATGTGGTGGAG GAACAAGATCACGTACAAGAGAGGTGAAGAGTGCGATTCCACCCGGAACA GAAGATTTTTGTGTGGAAACTAGTGAGACCGAAACTTGTAACACCAAAGA GTGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77472:112..468+

>mRNA_M-pyrifera_M_contig77472.18238.1 ID=mRNA_M-pyrifera_M_contig77472.18238.1|Name=mRNA_M-pyrifera_M_contig77472.18238.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig77472:112..468+ (Macrocystis pyrifera P11B4 male)
GCAGCACCATGTGCATCACTTGATCCACCACCAAATGGCAAGATTACTTG
TTCCAAGACTAGTACTGGCCTCCAACGATGCAAGTTTCACTGTGACGTGG
GATACTATCCATTCAACACAAACCATCCAATGAAGACAGAGTGTCGCATT
GATGGGAAATGGACAGAAGGGGTTCCTGAATGTGTGGAATTACAATGCTC
ATACAAGAACTGGAAGTCGTTCAGTTCTTGTTCTGTCACATGTGGTGGAG
GAACAAGATCACGTACAAGAGAGGTGAAGAGTGCGATTCCACCCGGAACA
GAAGATTTTTGTGTGGAAACTAGTGAGACCGAAACTTGTAACACCAAAGA
GTGCCCCGCAGCACCATGTGCATCACTTGATCCACCACCAAATGGCAAGA
TTACTTGTTCCAAGACTAGTACTGGCCTCCAACGATGCAAGTTTCACTGT
GACGTGGGATACTATCCATTCAACACAAACCATCCAATGAAGACAGAGTG
TCGCATTGATGGGAAATGGACAGAAGGGGTTCCTGAATGTGTGGAATTAC
AATGCTCATACAAGAACTGGAAGTCGTTCAGTTCTTGTTCTGTCACATGT
GGTGGAGGAACAAGATCACGTACAAGAGAGGTGAAGAGTGCGATTCCACC
CGGAACAGAAGATTTTTGTGTGGAAACTAGTGAGACCGAAACTTGTAACA
CCAAAGAGTGCCCC
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