mRNA_M-pyrifera_M_contig7743.18232.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7743.18232.1
Unique NamemRNA_M-pyrifera_M_contig7743.18232.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.740e-42
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    1 SDGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            +DGRGYLARTYYAEIEYVLP AVMQPVW+SV+  DGSVDFGLSYHRAFYS DYDDYHD+Y+QRWRMEDLPW+VTCVNRIT
Sbjct: 1753 ADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQRWRMEDLPWKVTCVNRIT 1832          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A6H5JBJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ3_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.350e-40
Identity = 70/88 (79.55%), Postives = 76/88 (86.36%), Query Frame = 1
Query:    1 SDGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQR--------WRMEDLPWQVTCVNRIT 240
            +DGRGYLARTYYAEIEYVLP AVMQPVW+SV+  DGSVDFGLSYHRAFYS DYDDYHD+Y+QR        WRMEDLPW+VTCVNRIT
Sbjct: 1821 ADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQRYGEQSGSRWRMEDLPWKVTCVNRIT 1908          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.530e-35
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 SDGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            +DG G LARTYY   EYV+P  VMQP+W SVK  DGS DFGLSYHRAFY+  YDDYHD++LQRWRMED+PW + CVNRIT
Sbjct: 1719 ADGHGVLARTYYDTTEYVMPGPVMQPIWESVKAPDGSTDFGLSYHRAFYNSSYDDYHDIFLQRWRMEDVPWNIVCVNRIT 1798          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A7S4DA20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA20_HETAK)

HSP 1 Score: 130 bits (327), Expect = 4.140e-34
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    7 GRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            GR YLARTYY ++EYVLPE +M P+W SVK  +GSV FGL+YHRAFY  +YD+YHD+YLQRWR ED PWQV CVNRIT
Sbjct:  167 GRAYLARTYYQDVEYVLPEPLMMPIWESVKDENGSVLFGLNYHRAFYEPEYDNYHDIYLQRWRKEDKPWQVICVNRIT 244          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A7S2GBC0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBC0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.010e-33
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    4 DGRGYLARTYYAEIEYVLPEAVMQPVWNSVKT------SDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            DGR +L RTYY ++EY+LPEAVMQP+W++VKT       DG  DF LSYHR FYS DYD+YHD+YLQRWR ED+PW+V CVNR+T
Sbjct:  650 DGRAFLGRTYYTDVEYILPEAVMQPLWSAVKTPTDDPLKDGETDFSLSYHRTFYSSDYDNYHDIYLQRWRDEDIPWKVKCVNRVT 734          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A7S0CJZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJZ5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.860e-33
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 SDGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            SDG  +L RTYYA +EY+LP  +MQP+W SVK  DG+ ++ L+YHRA Y   YDDYHD+YLQRWR E  PW+VTCVN IT
Sbjct:   24 SDGNAFLVRTYYATVEYILPSPIMQPMWESVKNDDGTTNYPLNYHRAHYEPGYDDYHDIYLQRWRTESKPWKVTCVNVIT 103          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A7S4T1F0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1F0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.120e-32
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 DGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            DG  YL RTYYA IEYVLP  VMQP+W SVK  DG+ +F LS+HRA Y   YDDYHD+YLQRWRMED PW++ CVN  T
Sbjct:   60 DGAAYLIRTYYATIEYVLPSPVMQPIWESVKNVDGTTNFALSHHRAVYEPGYDDYHDIYLQRWRMEDKPWKIICVNHFT 138          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: B5YLR0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLR0_THAPS)

HSP 1 Score: 121 bits (304), Expect = 2.420e-30
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 DGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            DG  YL +TYY   +YV+PEAVMQP W SVK +DGS++F LSYHRA Y   YDDY+D+YLQRWR ED PW+V CVNR+T
Sbjct: 1577 DGTAYLLKTYYDTTDYVVPEAVMQPTWESVKNADGSINFALSYHRAEYDPGYDDYYDIYLQRWRAEDKPWKVICVNRLT 1655          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: A0A7S2LHA4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHA4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.510e-30
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    4 DGRG------YLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            DG G      YL RTYYA IEYVLP AVMQP+W SVK  DGS  FGL+YHRA Y   YD+YHD+YLQRWR ED+PW+V CV+R T
Sbjct: 1562 DGEGRLNSTAYLVRTYYATIEYVLPAAVMQPMWESVKNIDGSTHFGLTYHRANYEPGYDNYHDIYLQRWRKEDIPWKVVCVDRST 1646          
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Match: K0SJH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH8_THAOC)

HSP 1 Score: 115 bits (287), Expect = 4.770e-28
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 DGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYSKDYDDYHDVYLQRWRMEDLPWQVTCVNRIT 240
            +G  YL RT+Y  +E+V+PE VMQP W SVK +DG+ +  L+YHRA Y   YDDYHD+++QRWR ED+PWQV CVNR+T
Sbjct: 1122 NGTAYLFRTFYDTVEFVVPEKVMQPTWESVKNADGTTNHPLTYHRAVYEPGYDDYHDIFIQRWRTEDMPWQVICVNRLT 1200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7743.18232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ2_ECTSI1.740e-4287.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ3_9PHAE6.350e-4079.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHE6_9STRA8.530e-3571.252Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DA20_HETAK4.140e-3471.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2GBC0_9STRA1.010e-3365.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0CJZ5_9STRA4.860e-3362.50Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4T1F0_9STRA5.120e-3267.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B5YLR0_THAPS2.420e-3065.82Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2LHA4_9STRA4.510e-3065.88Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
K0SJH8_THAOC4.770e-2859.49Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7743contigM-pyrifera_M_contig7743:579..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog2880.D8LIJ2
Hectar predicted targeting categoryother localisation
EggNOG OGs28K2B@1,2QSGV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.2905762-CDS-M-pyrifera_M_contig7743:578..7661622816675.2905762-CDS-M-pyrifera_M_contig7743:578..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7743 579..766 +
1692278112.6849642-CDS-M-pyrifera_M_contig7743:578..7661692278112.6849642-CDS-M-pyrifera_M_contig7743:578..766Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7743 579..766 +
1622816675.3033423-CDS-M-pyrifera_M_contig7743:1521..15731622816675.3033423-CDS-M-pyrifera_M_contig7743:1521..1573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7743 1522..1573 +
1692278112.7013924-CDS-M-pyrifera_M_contig7743:1521..15731692278112.7013924-CDS-M-pyrifera_M_contig7743:1521..1573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7743 1522..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7743.18232.1prot_M-pyrifera_M_contig7743.18232.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7743 579..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7743.18232.1

>prot_M-pyrifera_M_contig7743.18232.1 ID=prot_M-pyrifera_M_contig7743.18232.1|Name=mRNA_M-pyrifera_M_contig7743.18232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
SDGRGYLARTYYAEIEYVLPEAVMQPVWNSVKTSDGSVDFGLSYHRAFYS
KDYDDYHDVYLQRWRMEDLPWQVTCVNRIT
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mRNA from alignment at M-pyrifera_M_contig7743:579..1573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7743.18232.1 ID=mRNA_M-pyrifera_M_contig7743.18232.1|Name=mRNA_M-pyrifera_M_contig7743.18232.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=995bp|location=Sequence derived from alignment at M-pyrifera_M_contig7743:579..1573+ (Macrocystis pyrifera P11B4 male)
TCTGACGGCAGGGGATACCTGGCTCGCACATACTACGCCGAGATCGAGTA CGTGTTGCCCGAGGCCGTCATGCAACCAGTTTGGAACTCCGTCAAGACCT CCGATGGATCAGTGGACTTTGGGCTGAGCTATCACAGGGCCTTCTACTCC AAAGACTACGACGATTACCACGATGTTTACTTGCAGAGGTAAGCGGAGGG GGGGGTGTAACAGTTTTACTTTACCGGTACTGCCAGCCAGCCCGGCAGAA AGAACTCCGCGTCGAAAAGTGTGCTAGTTTGTCGAGAGTGTCGAGACATT TGTTGATAGTCAGCTAGTGAATGAACACAACGTATCGTAGGGCAAGGGTT TCTTCTGCACGTGTGGAAGTCTATTCGAGCCTCGAGCCGAAGCCCCTTGC AAGCGGCCGGATACACTGCAAATAGCCCGTGAGAGTCGTGGCGGATACCT TAAAAGCATCCCACGTCCCCCATCCCCCCTCCCCCTTCCCACGTGCACCT AAAAGCACCGACCGGCGAAGCATAAAGTATGTGTGGTTGTTGCCATTGCT GTTGTTGTTTTTGTTGCTGCTGTTCCGGCATGAACTCATCGGCACAATCT AGCCCGACACGCCAGGCTCCAAACATTCTTGCGGAGAGAAATAAAACAGA CCACAGGGAAAAACTGGTGGTGAAAAGCGAACGCAAACCCGACGTCAGAG AAGCGTGCAGAGCATCAGCCAAAGGAATTGATAGGTTCATCGTTCGTATC AGATACGTTGTGTTCTATGTACGACCTTTGGAAACGCAAACGTGAACAAC AATAAAATTGTAGAAGAAAATGAAAGAGAGTGCGTACGCAGTTCCTCATA CCAACACAAAAACATCAACAACATATGCGAACCCTTTCCGCCGTGCCTGC TTTATCGTCCCTCTTTTCCGTCGAACCCAAAATCATACACAAGATGGCGT ATGGAGGACTTGCCTTGGCAAGTGACCTGCGTGAACCGCATAACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7743:579..1573+

>mRNA_M-pyrifera_M_contig7743.18232.1 ID=mRNA_M-pyrifera_M_contig7743.18232.1|Name=mRNA_M-pyrifera_M_contig7743.18232.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig7743:579..1573+ (Macrocystis pyrifera P11B4 male)
TCTGACGGCAGGGGATACCTGGCTCGCACATACTACGCCGAGATCGAGTA
CGTGTTGCCCGAGGCCGTCATGCAACCAGTTTGGAACTCCGTCAAGACCT
CCGATGGATCAGTGGACTTTGGGCTGAGCTATCACAGGGCCTTCTACTCC
AAAGACTACGACGATTACCACGATGTTTACTTGCAGAGTCTGACGGCAGG
GGATACCTGGCTCGCACATACTACGCCGAGATCGAGTACGTGTTGCCCGA
GGCCGTCATGCAACCAGTTTGGAACTCCGTCAAGACCTCCGATGGATCAG
TGGACTTTGGGCTGAGCTATCACAGGGCCTTCTACTCCAAAGACTACGAC
GATTACCACGATGTTTACTTGCAGAGATGGCGTATGGAGGACTTGCCTTG
GCAAGTGACCTGCGTGAACCGCATAACGATGGCGTATGGAGGACTTGCCT
TGGCAAGTGACCTGCGTGAACCGCATAACG
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