mRNA_M-pyrifera_M_contig77420.18229.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77420.18229.1
Unique NamemRNA_M-pyrifera_M_contig77420.18229.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A7S2S180_9STRA (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S180_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.580e-10
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAAH 132
             LP+++FSHGLGG  EVYT+ C  LAS G  VV +EH DGS A+
Sbjct:  102 SLPVILFSHGLGGNAEVYTALCSHLASEGFVVVAIEHADGSGAY 145
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A5A8DWZ2_CAFRO (1-alkyl-2-acetylglycerophosphocholine esterase n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWZ2_CAFRO)

HSP 1 Score: 61.2 bits (147), Expect = 8.910e-10
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSA 126
            KLP+VVFSHGLGG+P+VY S   E+ S G  V+ VEH DGSA
Sbjct:  224 KLPVVVFSHGLGGVPDVYQSIISEVCSHGFIVLAVEHNDGSA 265
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A7S2S1A4_9STRA (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S1A4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.640e-9
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAAH 132
             LP+++FSHGLGG  EVYT+ C  LAS G  VV +EH DGS A+
Sbjct:  102 SLPVILFSHGLGGNAEVYTALCSHLASEGFVVVAIEHADGSGAY 145
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A6P7ZCV6_9AMPH (Platelet-activating factor acetylhydrolase n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7ZCV6_9AMPH)

HSP 1 Score: 60.1 bits (144), Expect = 2.250e-9
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            K PL++FSHGLG    +Y+S CME+ASRG  VV VEH D SA+
Sbjct:   99 KFPLIIFSHGLGAFRTLYSSVCMEMASRGFIVVAVEHRDRSAS 141
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A6P7S9G3_OCTVU (1-alkyl-2-acetylglycerophosphocholine esterase n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7S9G3_OCTVU)

HSP 1 Score: 59.3 bits (142), Expect = 3.070e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            K P+V+FSHGLGG+   Y++ C++LAS G  VV VEH DGSA+
Sbjct:  125 KFPVVIFSHGLGGMRTTYSTICIDLASHGFIVVAVEHRDGSAS 167
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: UPI00112C4CF1 (platelet-activating factor acetylhydrolase 2, cytoplasmic isoform X2 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112C4CF1)

HSP 1 Score: 59.7 bits (143), Expect = 3.100e-9
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            K PL++FSHGLG    +Y+S CME+ASRG  VV VEH D SA+
Sbjct:  117 KYPLIIFSHGLGAFRTLYSSVCMEMASRGFLVVAVEHRDRSAS 159
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BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A0L8FJ76_OCTBM (1-alkyl-2-acetylglycerophosphocholine esterase (Fragment) n=2 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8FJ76_OCTBM)

HSP 1 Score: 59.3 bits (142), Expect = 4.220e-9
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            K P+V+FSHGLGG+   Y++ C++LAS G  VV VEH DGSA+
Sbjct:  125 KFPVVIFSHGLGGMRTTYSTICIDLASHGFIVVAVEHRDGSAS 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A7J7IN03_9RHOD (1-alkyl-2-acetylglycerophosphocholine esterase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN03_9RHOD)

HSP 1 Score: 58.9 bits (141), Expect = 5.720e-9
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            +LP+V+FSHGLGG    Y   C  LAS GC V+ +EH DGSA+
Sbjct:  103 RLPVVIFSHGLGGTATAYAKLCCSLASHGCLVLALEHQDGSAS 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A267DE86_9PLAT (1-alkyl-2-acetylglycerophosphocholine esterase (Fragment) n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DE86_9PLAT)

HSP 1 Score: 58.9 bits (141), Expect = 5.770e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 LPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            LP+++FSHGLG    +Y+S C+ELASRG  V  VEH DGSA+
Sbjct:   93 LPVIIFSHGLGAQRHIYSSLCLELASRGFLVAAVEHRDGSAS 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Match: A0A1I8HEK6_9PLAT (1-alkyl-2-acetylglycerophosphocholine esterase n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HEK6_9PLAT)

HSP 1 Score: 58.9 bits (141), Expect = 5.810e-9
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 LPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAA 129
            LP+++FSHGLG    +Y+S C+ELASRG  V  VEH DGSA+
Sbjct: 1887 LPVIIFSHGLGAQRHIYSSLCLELASRGFLVAAVEHRDGSAS 1928
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77420.18229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2S180_9STRA3.580e-1059.091-alkyl-2-acetylglycerophosphocholine esterase n=1... [more]
A0A5A8DWZ2_CAFRO8.910e-1064.291-alkyl-2-acetylglycerophosphocholine esterase n=6... [more]
A0A7S2S1A4_9STRA1.640e-959.091-alkyl-2-acetylglycerophosphocholine esterase n=1... [more]
A0A6P7ZCV6_9AMPH2.250e-960.47Platelet-activating factor acetylhydrolase n=2 Tax... [more]
A0A6P7S9G3_OCTVU3.070e-958.141-alkyl-2-acetylglycerophosphocholine esterase n=2... [more]
UPI00112C4CF13.100e-960.47platelet-activating factor acetylhydrolase 2, cyto... [more]
A0A0L8FJ76_OCTBM4.220e-958.141-alkyl-2-acetylglycerophosphocholine esterase (Fr... [more]
A0A7J7IN03_9RHOD5.720e-955.811-alkyl-2-acetylglycerophosphocholine esterase n=1... [more]
A0A267DE86_9PLAT5.770e-959.521-alkyl-2-acetylglycerophosphocholine esterase (Fr... [more]
A0A1I8HEK6_9PLAT5.810e-959.521-alkyl-2-acetylglycerophosphocholine esterase n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77420contigM-pyrifera_M_contig77420:490..621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog7897.ENSLACP00000018995
Preferred namePAFAH2
KEGG rclassRC00037,RC00094
KEGG koko:K01062
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko01110,ko01130,map00565,map01100,map01110,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002009,GO:0003674,GO:0003824,GO:0003847,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006629,GO:0006950,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0010941,GO:0012505,GO:0016020,GO:0016042,GO:0016331,GO:0016787,GO:0016788,GO:0031984,GO:0032501,GO:0032502,GO:0042060,GO:0042175,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048598,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0052689,GO:0060429,GO:0060548,GO:0065007,GO:0065008,GO:0071704,GO:0098827,GO:1901575
EggNOG free text desc.1-alkyl-2-acetylglycerophosphocholine esterase activity
EggNOG OGs38D7T@33154,3BE36@33208,3D3K0@33213,487PE@7711,490Y2@7742,COG4188@1,KOG3847@2759
EC3.1.1.47
COG Functional cat.I
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.162626-CDS-M-pyrifera_M_contig77420:489..6211622816675.162626-CDS-M-pyrifera_M_contig77420:489..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77420 490..621 +
1692278112.6228337-CDS-M-pyrifera_M_contig77420:489..6211692278112.6228337-CDS-M-pyrifera_M_contig77420:489..621Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77420 490..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77420.18229.1prot_M-pyrifera_M_contig77420.18229.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77420 490..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77420.18229.1

>prot_M-pyrifera_M_contig77420.18229.1 ID=prot_M-pyrifera_M_contig77420.18229.1|Name=mRNA_M-pyrifera_M_contig77420.18229.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
KLPLVVFSHGLGGIPEVYTSTCMELASRGCFVVCVEHTDGSAAH
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mRNA from alignment at M-pyrifera_M_contig77420:490..621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77420.18229.1 ID=mRNA_M-pyrifera_M_contig77420.18229.1|Name=mRNA_M-pyrifera_M_contig77420.18229.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig77420:490..621+ (Macrocystis pyrifera P11B4 male)
AAGTTGCCGTTGGTGGTGTTTTCACATGGGTTGGGGGGCATTCCAGAGGT
GTACACGTCCACTTGCATGGAGCTGGCCTCCAGAGGGTGTTTTGTGGTGT
GTGTGGAGCATACAGATGGATCAGCAGCACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77420:490..621+

>mRNA_M-pyrifera_M_contig77420.18229.1 ID=mRNA_M-pyrifera_M_contig77420.18229.1|Name=mRNA_M-pyrifera_M_contig77420.18229.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig77420:490..621+ (Macrocystis pyrifera P11B4 male)
AAGTTGCCGTTGGTGGTGTTTTCACATGGGTTGGGGGGCATTCCAGAGGT
GTACACGTCCACTTGCATGGAGCTGGCCTCCAGAGGGTGTTTTGTGGTGT
GTGTGGAGCATACAGATGGATCAGCAGCACACAAGTTGCCGTTGGTGGTG
TTTTCACATGGGTTGGGGGGCATTCCAGAGGTGTACACGTCCACTTGCAT
GGAGCTGGCCTCCAGAGGGTGTTTTGTGGTGTGTGTGGAGCATACAGATG
GATCAGCAGCACAC
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