mRNA_M-pyrifera_M_contig77419.18228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77419.18228.1
Unique NamemRNA_M-pyrifera_M_contig77419.18228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A5A8C5M0_CAFRO (Heme O synthase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5M0_CAFRO)

HSP 1 Score: 218 bits (555), Expect = 9.360e-66
Identity = 108/198 (54.55%), Postives = 135/198 (68.18%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASA-GAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIK-DDQEEAQPASQA 588
            C P  A LGA+NI +YSL+YTP+K+V+  NTEVGA+VGAIPPLMGWA+  G+    P+  +LF  LFLWQMPHFYALAWRHR DYA  GY M+S+ DP G  TA   L Y+  L A P+   L GVT  MF VE TA N   +H A +F +DPSD  AR +F A+LWYLP++M F++FHS  W    D E+A+   +A
Sbjct:  136 CNPLTAALGAANIGIYSLIYTPMKQVSFLNTEVGAIVGAIPPLMGWAACTGSITAEPAGAALFAALFLWQMPHFYALAWRHRADYARGGYAMVSKDDPDGRRTATRTLGYSLGLLAFPVATTLAGVTSPMFVVEATAANTLFMHKAWRFYRDPSDDTARGVFFASLWYLPVIMFFLMFHSHRWRSATDAEDARELGEA 333          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: H3GG45_PHYRM (Protoheme IX farnesyltransferase, mitochondrial n=19 Tax=Phytophthora TaxID=4783 RepID=H3GG45_PHYRM)

HSP 1 Score: 217 bits (553), Expect = 1.260e-65
Identity = 106/194 (54.64%), Postives = 139/194 (71.65%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPAS 582
            C P VA LGA NI LY+LVYTP+K  +  NT VG+VVGAIPPLMGWA+A   +L P A     L++ WQMPHF+AL+WR RKDY   GY+M++  DPTGS +A   L Y+  +SA+P+ AALT  T +MFAVEGT VN Y ++LA KF  +PS+A A+ +FL +LWYLP++M  MV HS+ W+ D++ EA+  S
Sbjct:  173 CSPLVASLGAVNIGLYALVYTPMKMKSELNTWVGSVVGAIPPLMGWAAATGTILAPEAALHAYLMYCWQMPHFFALSWRSRKDYGRGGYKMVACNDPTGSRSAALALRYSYYMSAIPIVAALTDATSYMFAVEGTVVNAYAIYLAHKFYANPSNATAQKVFLTSLWYLPVIMGCMVLHSQQWMDDEEVEAKKES 366          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A3M6VNS3_9STRA (Protoheme IX farnesyltransferase, mitochondrial n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNS3_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.720e-65
Identity = 103/189 (54.50%), Postives = 138/189 (73.02%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEE 567
            C P VA LG  NI LYSLVYTP+K  +  NT VG+VVGAIPP+MGWA+A   ++ P A  L  L++ WQMPHF+AL+WR RKDYA  GY+M++  DPTGS +A   L Y+  + A+P+ AA+T  T +MFAVEGT VN Y ++LA KF  +PS+A+A+ +FLA+LWYLP++M  MV HS+ W+ D++ E
Sbjct:  173 CSPLVASLGVLNIGLYSLVYTPMKMKSELNTWVGSVVGAIPPIMGWAAATGTIMAPEAALLAYLMYCWQMPHFFALSWRSRKDYARGGYKMVACNDPTGSRSAALALRYSYYMGAIPIVAAVTDATSYMFAVEGTVVNAYTIYLAHKFYANPSNASAQKVFLASLWYLPVIMGCMVLHSQQWMDDEEIE 361          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: M4BN81_HYAAE (Protoheme IX farnesyltransferase, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN81_HYAAE)

HSP 1 Score: 213 bits (543), Expect = 4.120e-64
Identity = 104/189 (55.03%), Postives = 137/189 (72.49%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEE 567
            C P VA LG  NI LYSLVYTP+K  +  NT VG+VVGAIPP+MGWA+A   +L P A+    L++ WQMPHF+AL+WR RKDY   GY+M++  DPTGS +A   L Y+  +S +P+ AALTG T +MFAVEGT VN Y ++LA KF   PS+A+A+ +FLA+LWYLP+L+  MV HS+ W+ D++ E
Sbjct:  174 CSPLVASLGVLNIGLYSLVYTPMKMRSEWNTWVGSVVGAIPPVMGWAAATGTVLAPEAVLHACLMYCWQMPHFFALSWRSRKDYERGGYKMVACNDPTGSRSAALALKYSYYMSGIPIAAALTGATSYMFAVEGTVVNAYTIYLAHKFYAKPSNASAQKVFLASLWYLPVLLGCMVLHSQHWMDDEEIE 362          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A067CHW0_SAPPC (Protoheme IX farnesyltransferase, mitochondrial n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHW0_SAPPC)

HSP 1 Score: 212 bits (540), Expect = 6.590e-64
Identity = 108/196 (55.10%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPASQA 588
            C P  A L   NI LYS +YTP+K+ +  NT VGA+VGAIPP+MG A+A   LL P AL     LF+WQMPHF+AL+WR R DYA  GY+MI   DPTGS TA   + Y  ALS LP+ AA TG T +MFAVEG  +N Y +HLAR+F ++PS ANA  +F  +LWYLP ++  MVFHSK W KDD+  A    QA
Sbjct:  159 CNPLTAGLSLFNIGLYSCIYTPMKQTSEWNTWVGALVGAIPPVMGVAAANGLLLSPEALLTGSALFMWQMPHFFALSWRLRHDYARGGYKMIPCADPTGSRTAGVIMRYALALSTLPVAAAATGATSYMFAVEGLGINAYAVHLARQFYKNPSTANANKVFFCSLWYLPAVLGLMVFHSKNWTKDDEATADTERQA 354          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A662XZN3_9STRA (Protoheme IX farnesyltransferase, mitochondrial n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZN3_9STRA)

HSP 1 Score: 213 bits (542), Expect = 6.710e-64
Identity = 104/190 (54.74%), Postives = 138/190 (72.63%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEA 570
            C P VA LGA NI LYSLVYTP+K  +  NT VG++VGAIPPLMGWA+A   LL P A     L+F WQMPHF+AL+WR RKDYA  GY+M++  DPTGS +A   + Y+  ++ +P+ AALT  T +MFAVEGT VN Y ++LA KF  +P++A A+ +FLA+LWYLP++M  MV HS+ W+ +++ EA
Sbjct:  180 CSPLVASLGAFNIGLYSLVYTPMKMRSELNTWVGSLVGAIPPLMGWAAATGTLLAPEAALHAYLMFCWQMPHFFALSWRSRKDYARGGYKMVACNDPTGSRSAGLAVRYSWYMAPIPIVAALTDATSYMFAVEGTVVNAYAIYLAHKFYANPTNATAQKVFLASLWYLPVIMGCMVLHSQHWMDEEEVEA 369          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A813AYQ1_9DINO (Heme O synthase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AYQ1_9DINO)

HSP 1 Score: 208 bits (530), Expect = 9.270e-64
Identity = 106/180 (58.89%), Postives = 122/180 (67.78%), Query Frame = 1
Query:    7 PTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAW 546
            P    LG  NIALYS VYTPLK+VTP NT+VGAVVGAIPPLMGWA+A    L P AL+   LL LWQMPHFYALAWRHR DYA  GY M+S  +PTG+   K +LA+TA L+ALP      GVT  MFAV    +N Y L+    F + P DA AR +FL +LWYLPL+M  MVF S  W
Sbjct:   79 PLTTALGLGNIALYSAVYTPLKKVTPWNTDVGAVVGAIPPLMGWAAATGTALAPGALAAAALLHLWQMPHFYALAWRHRADYAAGGYAMLSVTEPTGTAIGKWSLAHTAGLAALPFLCVAGGVTSPMFAVCAAPINAYALYTTAAFAKAPDDAGARRVFLWSLWYLPLMMGLMVFFSTEW 258          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A1V9YBM6_9STRA (Protoheme IX farnesyltransferase, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBM6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.610e-62
Identity = 105/196 (53.57%), Postives = 133/196 (67.86%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPASQA 588
            C P  A L   NI LYS +YTP+K+ +  NT +GA+VGAIPP+MG A+A   +L P AL     LF+WQMPHF+AL+WR R DYA  GY+MI   DPTG+ TA   + Y   L+ALP+ AA TG T +MFAVEG A+N Y L+LARKF  +P+ ANA  +F  +LWYLP ++  MVFHSK W KDD++  Q   QA
Sbjct:  157 CNPLTAGLSLFNIGLYSCIYTPMKQTSEWNTWIGALVGAIPPVMGVAAANGLMLSPEALLTGSALFMWQMPHFFALSWRLRHDYARGGYKMIPCADPTGARTAGVIMRYALGLTALPVAAAATGATSYMFAVEGLAINAYALNLARKFYANPTTANANKVFFCSLWYLPAVLGLMVFHSKNWTKDDEKVVQGERQA 352          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A5D6XPP3_9STRA (Protoheme IX farnesyltransferase, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPP3_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.630e-62
Identity = 101/195 (51.79%), Postives = 136/195 (69.74%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPASQ 585
            C P VA LG  NI LY+LVYTP+K  +  NT  GAVVGA+PPLMGWA+A   LL P A     LLF WQMPHF+AL+WR R DY   GY+M++  DPTG+ +A   L Y+  ++ +P+ AALT  T +MFAVEG+ VN Y ++LA +F + PS+A+A+ +FL +LWYLP++M  MV HS+ W+ DD+ +A+   Q
Sbjct:  174 CSPLVASLGVFNIGLYALVYTPMKTRSEWNTWAGAVVGAVPPLMGWAAATGSLLAPEAALQAYLLFCWQMPHFFALSWRSRADYMRGGYKMVACADPTGARSAALALRYSLYMAPIPIVAALTDATSYMFAVEGSLVNAYAIYLAHQFYRKPSNASAQKVFLCSLWYLPVMMGCMVLHSQRWLDDDERDAKRQQQ 368          
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Match: A0A484EG65_BRELC (Protoheme IX farnesyltransferase, mitochondrial n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG65_BRELC)

HSP 1 Score: 207 bits (528), Expect = 7.450e-62
Identity = 100/195 (51.28%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    1 CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAGAPLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGSITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQDPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPASQ 585
            C P VA LG  NI LYSLVYTP+K  +  NT VG++VGA+PP+MGWA+A   +  P A     L++ WQMPHF+AL+WR RKDY   GY+M++  DPTGS +A   L Y+  +SA+P+ AALT  T +MFAVEGT VN Y ++L  +F+  PS+A A+ +FLA+LWYLPL+M  MV HS+ W+  ++   Q   Q
Sbjct:  176 CSPLVASLGVFNIGLYSLVYTPMKMKSEWNTWVGSIVGAVPPVMGWAAATGSVFAPEAALHAYLMYCWQMPHFFALSWRSRKDYRRGGYQMVACNDPTGSRSAALALRYSYFMSAIPIVAALTNATSYMFAVEGTVVNAYNIYLTHQFQAKPSNATAQKVFLASLWYLPLIMGCMVMHSQQWMDKEETRHQKRDQ 370          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77419.18228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C5M0_CAFRO9.360e-6654.55Heme O synthase n=3 Tax=Cafeteria roenbergensis Ta... [more]
H3GG45_PHYRM1.260e-6554.64Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A3M6VNS3_9STRA3.720e-6554.50Protoheme IX farnesyltransferase, mitochondrial n=... [more]
M4BN81_HYAAE4.120e-6455.03Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A067CHW0_SAPPC6.590e-6455.10Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A662XZN3_9STRA6.710e-6454.74Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A813AYQ1_9DINO9.270e-6458.89Heme O synthase n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
A0A1V9YBM6_9STRA1.610e-6253.57Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A5D6XPP3_9STRA4.630e-6251.79Protoheme IX farnesyltransferase, mitochondrial n=... [more]
A0A484EG65_BRELC7.450e-6251.28Protoheme IX farnesyltransferase, mitochondrial n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77419contigM-pyrifera_M_contig77419:418..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue8.7e-54
Seed eggNOG ortholog164328.Phyra74757
Preferred nameCOX10
KEGG rclassRC01786
KEGG koko:K02257,ko:K09008,ko:K22072
KEGG ReactionR07411
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714
KEGG ModuleM00154
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004311,GO:0004518,GO:0004519,GO:0004659,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006753,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008495,GO:0008535,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016740,GO:0016765,GO:0016787,GO:0016788,GO:0017004,GO:0017144,GO:0018130,GO:0018342,GO:0018343,GO:0019438,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033013,GO:0033014,GO:0034622,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046148,GO:0046160,GO:0046483,GO:0048285,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097354,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs3QC4C@4776,COG0109@1,KOG1380@2759
EC2.5.1.141
COG Functional cat.H
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03029
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816675.127864-CDS-M-pyrifera_M_contig77419:417..10051622816675.127864-CDS-M-pyrifera_M_contig77419:417..1005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77419 418..1005 -
1692278112.6074326-CDS-M-pyrifera_M_contig77419:417..10051692278112.6074326-CDS-M-pyrifera_M_contig77419:417..1005Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77419 418..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77419.18228.1prot_M-pyrifera_M_contig77419.18228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77419 418..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77419.18228.1

>prot_M-pyrifera_M_contig77419.18228.1 ID=prot_M-pyrifera_M_contig77419.18228.1|Name=mRNA_M-pyrifera_M_contig77419.18228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
CGPTVALLGASNIALYSLVYTPLKRVTPRNTEVGAVVGAIPPLMGWASAG
APLLHPSALSLFLLLFLWQMPHFYALAWRHRKDYANAGYEMISRRDPTGS
ITAKNNLAYTAALSALPLFAALTGVTGHMFAVEGTAVNLYMLHLARKFKQ
DPSDANARALFLATLWYLPLLMAFMVFHSKAWIKDDQEEAQPASQA
back to top

mRNA from alignment at M-pyrifera_M_contig77419:418..1005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77419.18228.1 ID=mRNA_M-pyrifera_M_contig77419.18228.1|Name=mRNA_M-pyrifera_M_contig77419.18228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig77419:418..1005- (Macrocystis pyrifera P11B4 male)
TGCGGACCAACGGTCGCCTTGCTGGGCGCTTCGAATATCGCGCTCTACTC GCTCGTGTACACCCCTCTGAAGCGCGTCACCCCGCGCAACACCGAGGTGG GGGCAGTGGTGGGGGCCATCCCGCCTCTCATGGGCTGGGCATCCGCTGGA GCCCCCTTGCTCCACCCCTCCGCGCTCTCCCTCTTCCTCCTGCTCTTCCT CTGGCAAATGCCGCACTTCTACGCCCTCGCGTGGAGACACCGCAAGGACT ACGCCAACGCGGGGTACGAGATGATCTCCAGGAGAGACCCCACCGGAAGC ATAACGGCCAAAAACAACCTTGCCTACACCGCCGCCCTCAGCGCCCTCCC ACTCTTCGCCGCCCTCACGGGCGTCACGGGACACATGTTTGCAGTCGAAG GCACGGCCGTCAACTTGTACATGCTGCACCTGGCCCGGAAATTCAAGCAA GACCCCAGCGACGCAAATGCACGAGCGCTGTTCCTCGCAACCCTGTGGTA CCTGCCCCTCCTCATGGCCTTCATGGTCTTCCACTCCAAGGCGTGGATCA AGGACGACCAGGAAGAAGCACAACCCGCCTCACAGGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77419:418..1005-

>mRNA_M-pyrifera_M_contig77419.18228.1 ID=mRNA_M-pyrifera_M_contig77419.18228.1|Name=mRNA_M-pyrifera_M_contig77419.18228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1176bp|location=Sequence derived from alignment at M-pyrifera_M_contig77419:418..1005- (Macrocystis pyrifera P11B4 male)
TGCGGACCAACGGTCGCCTTGCTGGGCGCTTCGAATATCGCGCTCTACTC
GCTCGTGTACACCCCTCTGAAGCGCGTCACCCCGCGCAACACCGAGGTGG
GGGCAGTGGTGGGGGCCATCCCGCCTCTCATGGGCTGGGCATCCGCTGGA
GCCCCCTTGCTCCACCCCTCCGCGCTCTCCCTCTTCCTCCTGCTCTTCCT
CTGGCAAATGCCGCACTTCTACGCCCTCGCGTGGAGACACCGCAAGGACT
ACGCCAACGCGGGGTACGAGATGATCTCCAGGAGAGACCCCACCGGAAGC
ATAACGGCCAAAAACAACCTTGCCTACACCGCCGCCCTCAGCGCCCTCCC
ACTCTTCGCCGCCCTCACGGGCGTCACGGGACACATGTTTGCAGTCGAAG
GCACGGCCGTCAACTTGTACATGCTGCACCTGGCCCGGAAATTCAAGCAA
GACCCCAGCGACGCAAATGCACGAGCGCTGTTCCTCGCAACCCTGTGGTA
CCTGCCCCTCCTCATGGCCTTCATGGTCTTCCACTCCAAGGCGTGGATCA
AGGACGACCAGGAAGAAGCACAACCCGCCTCACAGGCCTGCGGACCAACG
GTCGCCTTGCTGGGCGCTTCGAATATCGCGCTCTACTCGCTCGTGTACAC
CCCTCTGAAGCGCGTCACCCCGCGCAACACCGAGGTGGGGGCAGTGGTGG
GGGCCATCCCGCCTCTCATGGGCTGGGCATCCGCTGGAGCCCCCTTGCTC
CACCCCTCCGCGCTCTCCCTCTTCCTCCTGCTCTTCCTCTGGCAAATGCC
GCACTTCTACGCCCTCGCGTGGAGACACCGCAAGGACTACGCCAACGCGG
GGTACGAGATGATCTCCAGGAGAGACCCCACCGGAAGCATAACGGCCAAA
AACAACCTTGCCTACACCGCCGCCCTCAGCGCCCTCCCACTCTTCGCCGC
CCTCACGGGCGTCACGGGACACATGTTTGCAGTCGAAGGCACGGCCGTCA
ACTTGTACATGCTGCACCTGGCCCGGAAATTCAAGCAAGACCCCAGCGAC
GCAAATGCACGAGCGCTGTTCCTCGCAACCCTGTGGTACCTGCCCCTCCT
CATGGCCTTCATGGTCTTCCACTCCAAGGCGTGGATCAAGGACGACCAGG
AAGAAGCACAACCCGCCTCACAGGCC
back to top