mRNA_M-pyrifera_M_contig77377.18220.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77377.18220.1
Unique NamemRNA_M-pyrifera_M_contig77377.18220.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A7S1U3V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3V6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.340e-17
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDID--SGCVDVKIPKKEHGEIFPDLDLVSRVLV 297
            P F L QD +FV++   +   R+S   + +EG      +  P+ L+L LP ++VDDERC+ VYD+D  +G +   +PK E G  FPDLDL SR+LV
Sbjct:    5 PKFSLRQDDDFVYVDIHVPWIRVSEAEIHVEG-CAFSFYCKPYLLKLTLPGEVVDDERCRGVYDLDKNNGTITAHLPKAEPGTFFPDLDLKSRLLV 99
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: SHQ1_SCHPO (Protein shq1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=SHQ1_SCHPO)

HSP 1 Score: 82.0 bits (201), Expect = 4.740e-16
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVLV-----PVKKSIL 318
            P F L QD EFV+L       +   V +D          AP F L+LELP +++DD+R  A YDI SG V +K PK+  GE+FPDLDL++ +LV     PVKK ++
Sbjct:    4 PKFELRQDEEFVYLDVHTPYIKAKNVEIDAFNNEVNFCIAPYF-LKLELPGNVLDDDRANASYDISSGFVHIKFPKETPGEVFPDLDLLTTLLVNQNKEPVKKPLI 108
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A397GU38_9GLOM (CS domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GU38_9GLOM)

HSP 1 Score: 81.3 bits (199), Expect = 9.640e-16
Identity = 39/98 (39.80%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVLVPVKK 309
            P F ++Q+  FV +H ++   + S V +  +G      +A P+ LRL  P DL++DER KA YD++   + +++PKK HGE FPDLDL++++L P K+
Sbjct:    4 PSFTITQNNTFVSIHLKVPHVKASEVELYCDGP-DFTFYARPYYLRLHFPGDLIEDERFKASYDMNKDEMFIEVPKKNHGEEFPDLDLLTKLLAPRKR 100
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A8K1FE71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE71_PYTOL)

HSP 1 Score: 80.9 bits (198), Expect = 1.340e-15
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYD--IDSGCVDVKIPKKEHGEIFPDLDLVSRVLVPVKKSI 315
            P F ++QDA FV++H  +   R+S +   +EG      +  P+ L+L+ P ++VDD+  KAVYD  +D+G + V +PKK+ G+ F DLDL++++L P K  +
Sbjct:    5 PRFHVTQDAAFVYVHVNVPYVRVSEMEFHVEGLH-FSFYCKPYLLKLQFPHEVVDDDLAKAVYDPNVDNGTITVHLPKKDPGQHFEDLDLITKLLQPKKAPV 105
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A1E3QP68_9ASCO (CS domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QP68_9ASCO)

HSP 1 Score: 79.0 bits (193), Expect = 6.250e-15
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHA-PPFSLRLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVL 294
            P F ++QD EF+ +  ++   R +   +++  E  + + + PP+ LRL LP  LVDDER  A YD  S C+ VK+PK   G++FPDLDL S++L
Sbjct:    4 PFFTINQDDEFIFIDIKVSHIRFNAPDIEMVVENEMFVFSLPPYYLRLRLPLPLVDDERSNAHYDSKSECIKVKLPKLNKGDVFPDLDLTSKML 97
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A0X8HSK3_9SACH (HEL210Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HSK3_9SACH)

HSP 1 Score: 78.6 bits (192), Expect = 8.460e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARIS--GVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVL 294
            P F LSQD EFV+L   +   R +  G+ + +EG   V  H  P+ LRL LP +L DDERC A Y     C+ +K+PK   GE F DLD+ S++L
Sbjct:    4 PKFTLSQDDEFVYLTINISNIRFNAPGLEISVEGNLFVF-HLLPYYLRLRLPHELCDDERCTAEYKSTEECIFIKLPKLIKGEFFEDLDIPSKLL 97
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: G8YLX3_PICSO (Piso0_001855 protein n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8YLX3_PICSO)

HSP 1 Score: 76.3 bits (186), Expect = 5.590e-14
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVD-IEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVL 294
            P F ++QD EF+++  ++   R SG  V+ I  E   +   PP+ LRL LP   +DDER  + YD  +  V+VKIPK   GE FPDLDL +++L
Sbjct:    4 PYFSINQDDEFIYIDIKVSHVRFSGSAVEMIVQEELFIFSLPPYYLRLRLPKPCIDDERSHSYYDSKNESVNVKIPKLNKGEWFPDLDLQAKLL 97
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: A0A225WTL0_9STRA (CS domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WTL0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.750e-14
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDI--DSGCVDVKIPKKEHGEIFPDLDLVSRVLVPVKKSI 315
            P F ++QDA +V +H  +   R+S +   ++G R       P+ L+L  P  +VDDE  KAVYD   D+G + V +PKKE G+ FPDLD+++++L P +  +
Sbjct:    5 PKFHVTQDAAWVFVHVHVPFVRVSEMEFYVDG-RDFTFFCKPYLLKLHFPHQVVDDELAKAVYDPNKDNGTIVVHLPKKEPGQDFPDLDMLTKLLQPQRPPV 105
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: G4ZMP3_PHYSP (CS domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZMP3_PHYSP)

HSP 1 Score: 72.4 bits (176), Expect = 8.690e-14
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDI--DSGCVDVKIPKKEHGEIFPDLDLVSRVL 294
            P F ++QDA +V +H  +   R+S +   ++G      +  P+ L+L  P ++VDDE  KAVYD   D+G + V +PKKE G+ FPDLD+++++L
Sbjct:    5 PRFHVTQDAAWVFVHVHVPFVRVSEMEFYVDG-LDFTFYCKPYLLKLHFPHEVVDDELAKAVYDPNKDNGMIVVHLPKKEAGQHFPDLDMLTKLL 98
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BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Match: D0RMC7_PHYIT (CS domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMC7_PHYIT)

HSP 1 Score: 72.4 bits (176), Expect = 9.260e-14
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   16 PPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSLRLELPSDLVDDERCKAVYDI--DSGCVDVKIPKKEHGEIFPDLDLVSRVLVPVKKSI 315
            P F ++QDA +V +H  +   R+S +   ++          P+ L+L  P ++VDDE  KAVYD   ++G + V +PKKE G+ FPDLD+++++L P + SI
Sbjct:    5 PRFHVTQDAAWVFVHVHVPFVRVSDMEFYVDNV-DFTFFCKPYLLKLHFPHEVVDDELAKAVYDPNKENGTIVVHLPKKEPGQEFPDLDMLTKLLQPQRPSI 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77377.18220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1U3V6_9STRA2.340e-1742.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
SHQ1_SCHPO4.740e-1643.40Protein shq1 n=1 Tax=Schizosaccharomyces pombe (st... [more]
A0A397GU38_9GLOM9.640e-1639.80CS domain-containing protein n=1 Tax=Diversispora ... [more]
A0A8K1FE71_PYTOL1.340e-1538.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1E3QP68_9ASCO6.250e-1541.49CS domain-containing protein n=1 Tax=Babjeviella i... [more]
A0A0X8HSK3_9SACH8.460e-1544.21HEL210Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
G8YLX3_PICSO5.590e-1442.55Piso0_001855 protein n=2 Tax=Pichia sorbitophila (... [more]
A0A225WTL0_9STRA7.750e-1438.24CS domain-containing protein n=1 Tax=Phytophthora ... [more]
G4ZMP3_PHYSP8.690e-1438.95CS domain-containing protein (Fragment) n=1 Tax=Ph... [more]
D0RMC7_PHYIT9.260e-1437.25CS domain-containing protein n=1 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77377contigM-pyrifera_M_contig77377:275..592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.2
Seed ortholog evalue8.1e-14
Seed eggNOG ortholog4896.SPBC8D2.13.1
KEGG koko:K14764
Hectar predicted targeting categoryother localisation
GOsGO:0000491,GO:0000493,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051082,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.Box H ACA snoRNP assembly protein Shq1
EggNOG OGs39CSS@33154,3MDFJ@451866,3NYPB@4751,3QPSF@4890,KOG3247@1,KOG3247@2759
COG Functional cat.S
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.5865135-CDS-M-pyrifera_M_contig77377:274..5921622816674.5865135-CDS-M-pyrifera_M_contig77377:274..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77377 275..592 -
1692278112.2885838-CDS-M-pyrifera_M_contig77377:274..5921692278112.2885838-CDS-M-pyrifera_M_contig77377:274..592Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77377 275..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77377.18220.1prot_M-pyrifera_M_contig77377.18220.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77377 275..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77377.18220.1

>prot_M-pyrifera_M_contig77377.18220.1 ID=prot_M-pyrifera_M_contig77377.18220.1|Name=mRNA_M-pyrifera_M_contig77377.18220.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MAHHPPPFRLSQDAEFVHLHAELGKARISGVRVDIEGERGVLLHAPPFSL
RLELPSDLVDDERCKAVYDIDSGCVDVKIPKKEHGEIFPDLDLVSRVLVP
VKKSIL
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mRNA from alignment at M-pyrifera_M_contig77377:275..592-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77377.18220.1 ID=mRNA_M-pyrifera_M_contig77377.18220.1|Name=mRNA_M-pyrifera_M_contig77377.18220.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig77377:275..592- (Macrocystis pyrifera P11B4 male)
ATGGCGCATCATCCTCCACCGTTTCGGTTGTCACAAGACGCAGAGTTTGT
GCATCTTCATGCTGAACTTGGAAAAGCTAGAATTTCTGGGGTGAGGGTGG
ATATTGAGGGAGAAAGAGGCGTGTTATTGCATGCTCCTCCTTTTTCCTTA
CGTTTAGAGCTTCCATCGGATCTTGTCGATGATGAAAGATGTAAAGCAGT
GTATGATATTGATTCTGGGTGTGTAGATGTGAAGATTCCGAAGAAAGAAC
ATGGTGAAATATTCCCAGACCTTGATTTGGTGTCTCGTGTGCTTGTTCCA
GTCAAGAAAAGCATACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77377:275..592-

>mRNA_M-pyrifera_M_contig77377.18220.1 ID=mRNA_M-pyrifera_M_contig77377.18220.1|Name=mRNA_M-pyrifera_M_contig77377.18220.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig77377:275..592- (Macrocystis pyrifera P11B4 male)
ATGGCGCATCATCCTCCACCGTTTCGGTTGTCACAAGACGCAGAGTTTGT
GCATCTTCATGCTGAACTTGGAAAAGCTAGAATTTCTGGGGTGAGGGTGG
ATATTGAGGGAGAAAGAGGCGTGTTATTGCATGCTCCTCCTTTTTCCTTA
CGTTTAGAGCTTCCATCGGATCTTGTCGATGATGAAAGATGTAAAGCAGT
GTATGATATTGATTCTGGGTGTGTAGATGTGAAGATTCCGAAGAAAGAAC
ATGGTGAAATATTCCCAGACCTTGATTTGGTGTCTCGTGTGCTTGTTCCA
GTCAAGAAAAGCATACTCATGGCGCATCATCCTCCACCGTTTCGGTTGTC
ACAAGACGCAGAGTTTGTGCATCTTCATGCTGAACTTGGAAAAGCTAGAA
TTTCTGGGGTGAGGGTGGATATTGAGGGAGAAAGAGGCGTGTTATTGCAT
GCTCCTCCTTTTTCCTTACGTTTAGAGCTTCCATCGGATCTTGTCGATGA
TGAAAGATGTAAAGCAGTGTATGATATTGATTCTGGGTGTGTAGATGTGA
AGATTCCGAAGAAAGAACATGGTGAAATATTCCCAGACCTTGATTTGGTG
TCTCGTGTGCTTGTTCCAGTCAAGAAAAGCATACTC
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