mRNA_M-pyrifera_M_contig77370.18218.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77370.18218.1
Unique NamemRNA_M-pyrifera_M_contig77370.18218.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2IFE7_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFE7_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 7.110e-20
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1 
Query:    4 TVTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTI 411
            T TL+G VPDEGAR QLV +A   +G GNV+D LTID    L  GTI   G +  GD  P+ L+    A LGLT    D+S     V       A+   SVVLTG +PD+A++  + A+AE  +G  NVD +GL I
Sbjct:   77 TATLSGTVPDEGARIQLVRIAEDEFGRGNVVDDLTIDPGVDLATGTIDIRGVSETGDDAPEILRLTAHAQLGLTPGEFDISSVDPAVDPAVVLMAVEGDSVVLTGTVPDEATVRRLIAAAEAAYGDGNVDGTGLEI 212
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BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2DKM5_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DKM5_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 1.740e-17
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:   10 TLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTI 411
            T++GAVPDEGAR QL+ +A  R+G GNVID LT+D    L  G I  SG A +GD  P+ L  +  A LGL     D+ F          E  +    VV+TG +P ++  D +  SAE V+G  NVD +G+ +
Sbjct:   79 TISGAVPDEGARAQLIRIAEDRFGNGNVIDELTVDPGIDLKTGVINFSGIADEGDLAPEQLLLNAGADLGLAAGRFDLEFVEPQFEPAVIEIVVGELPVVVTGTVPTESDRDRLVQSAEAVYGEGNVDVAGVVV 212
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BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Match: A0A7Y2DBQ7_9ACTN (OmpA family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DBQ7_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 6.880e-8
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:    7 VTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITTSGTATDGDQNPQGLQSDVAAALGLTESGLDVS--FEAAPVVSVDAEAALSAGSVVLTGVLPDQASIDSMTASAEDVWGADNV 390
            +TL G VPD      +   A   +GEGNV+++LTID+ TT  GGT+T  GT   G ++ +    D  A L  T +G +V    +   VV      A+   +V LTG +PD+ +   +   A  ++GA+NV
Sbjct:   77 ITLDGVVPDAATSEAMEAKAVEVFGEGNVVNNLTIDDTTTTAGGTVTIVGTV--GGESSRERVVDAFAPL-ATGAGYEVDDQIQVNEVVPSAVVMAIDGDTVTLTGAVPDEGTKGELNGLASTIFGAENV 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77370.18218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y2IFE7_9ACTN7.110e-2044.85OmpA family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7Y2DKM5_9ACTN1.740e-1741.04OmpA family protein n=1 Tax=Acidimicrobiales bacte... [more]
A0A7Y2DBQ7_9ACTN6.880e-834.62OmpA family protein n=1 Tax=Acidimicrobiales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77370contigM-pyrifera_M_contig77370:594..1007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.4818306-CDS-M-pyrifera_M_contig77370:593..10071622816674.4818306-CDS-M-pyrifera_M_contig77370:593..1007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77370 594..1007 +
1692278112.2359986-CDS-M-pyrifera_M_contig77370:593..10071692278112.2359986-CDS-M-pyrifera_M_contig77370:593..1007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77370 594..1007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77370.18218.1prot_M-pyrifera_M_contig77370.18218.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77370 594..1007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77370.18218.1

>prot_M-pyrifera_M_contig77370.18218.1 ID=prot_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
GTVTLTGAVPDEGARRQLVDLATARYGEGNVIDSLTIDENTTLTGGTITT
SGTATDGDQNPQGLQSDVAAALGLTESGLDVSFEAAPVVSVDAEAALSAG
SVVLTGVLPDQASIDSMTASAEDVWGADNVDASGLTIG
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mRNA from alignment at M-pyrifera_M_contig77370:594..1007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77370.18218.1 ID=mRNA_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:594..1007+ (Macrocystis pyrifera P11B4 male)
GGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAAGGCGCTCGGCGCCA
GTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGGCAATGTGATCGACT
CGCTCACCATCGACGAGAACACCACGCTCACCGGCGGCACGATCACCACG
AGCGGCACCGCCACCGACGGCGACCAGAATCCGCAGGGACTCCAGAGCGA
TGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCTCGACGTCTCGTTCG
AGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAGCCCTTTCGGCCGGC
TCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCCTCGATCGACTCGAT
GACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAACGTCGACGCTTCCG
GCCTCACCATCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77370:594..1007+

>mRNA_M-pyrifera_M_contig77370.18218.1 ID=mRNA_M-pyrifera_M_contig77370.18218.1|Name=mRNA_M-pyrifera_M_contig77370.18218.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:594..1007+ (Macrocystis pyrifera P11B4 male)
GGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAAGGCGCTCGGCGCCA
GTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGGCAATGTGATCGACT
CGCTCACCATCGACGAGAACACCACGCTCACCGGCGGCACGATCACCACG
AGCGGCACCGCCACCGACGGCGACCAGAATCCGCAGGGACTCCAGAGCGA
TGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCTCGACGTCTCGTTCG
AGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAGCCCTTTCGGCCGGC
TCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCCTCGATCGACTCGAT
GACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAACGTCGACGCTTCCG
GCCTCACCATCGGCGGCACGGTCACCCTCACCGGCGCCGTGCCCGACGAA
GGCGCTCGGCGCCAGTTGGTCGATCTCGCCACCGCTCGCTACGGCGAGGG
CAATGTGATCGACTCGCTCACCATCGACGAGAACACCACGCTCACCGGCG
GCACGATCACCACGAGCGGCACCGCCACCGACGGCGACCAGAATCCGCAG
GGACTCCAGAGCGATGTCGCCGCAGCGCTCGGGCTGACCGAATCCGGGCT
CGACGTCTCGTTCGAGGCCGCTCCGGTCGTGTCGGTCGATGCCGAGGCAG
CCCTTTCGGCCGGCTCGGTCGTCCTGACCGGCGTGTTGCCGGACCAGGCC
TCGATCGACTCGATGACCGCCTCAGCCGAGGACGTGTGGGGCGCCGACAA
CGTCGACGCTTCCGGCCTCACCATCGGC
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