mRNA_M-pyrifera_M_contig77370.18217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77370.18217.1
Unique NamemRNA_M-pyrifera_M_contig77370.18217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A2E8LGP1_9ACTN (Tryptophan synthase beta chain n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LGP1_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 2.920e-12
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGHLDLAAY++YL GE+VDY YPE K+ EA++++P
Sbjct:  413 ALCGHGHLDLAAYEKYLAGELVDYDYPEEKIAEAMANVP 451
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A4R5E190_9ACTN (TrpB-like pyridoxal-phosphate dependent enzyme (Fragment) n=1 Tax=Actinomadura sp. 6K520 TaxID=2530364 RepID=A0A4R5E190_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 4.430e-12
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGHLD+AAYDRYL GE+ D+  P+++++EAL+ LP
Sbjct:   27 ALCGHGHLDMAAYDRYLSGEMEDHPLPQSRLDEALTTLP 65
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7W3QME0_ACTNM (Tryptophan synthase beta chain n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QME0_ACTNM)

HSP 1 Score: 67.0 bits (162), Expect = 7.440e-12
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGHLD+AAYDRYL GE+ D+A PE ++  ALSHLP
Sbjct:  401 ALCGHGHLDMAAYDRYLSGEMTDHALPEDRLAAALSHLP 439
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7Y1XT28_9ACTN (TrpB-like pyridoxal phosphate-dependent enzyme n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1XT28_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-11
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGH DLA+Y  YL GE+VDY YPEAKV EA+  +P
Sbjct:  294 ALCGHGHFDLASYASYLAGELVDYDYPEAKVQEAMERIP 332
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: UPI00066C32C2 (TrpB-like pyridoxal phosphate-dependent enzyme n=2 Tax=Nonomuraea TaxID=83681 RepID=UPI00066C32C2)

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-11
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGH DLAAYDRYL GE+ D+  P+ +++EALS LP
Sbjct:  397 ALCGHGHFDLAAYDRYLSGEMTDFTLPQERIDEALSELP 435
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7Y2A324_9ACTN (Tryptophan synthase beta chain n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2A324_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 2.610e-11
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 LCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            LCGHGH D+A+Y  Y  GE+ DYAYPEAKV EA++HLP
Sbjct:  412 LCGHGHFDMASYQAYFDGELEDYAYPEAKVAEAMTHLP 449
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A6I1ZPJ2_9CHLR (Tryptophan synthase beta chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1ZPJ2_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-11
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   10 GHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLPQ 120
            GHGH D+AAYD YL G++VDY YPE KV EAL+HLP+
Sbjct:  414 GHGHFDMAAYDAYLAGKLVDYEYPEEKVKEALTHLPE 450
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7V8Z347_9ACTN (Tryptophan synthase beta chain n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8Z347_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-11
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLPQW 123
            ALCGHGH D+ AYDRY  G++ DY YPE KV++AL+ LP +
Sbjct:  412 ALCGHGHFDMGAYDRYFAGDLTDYDYPEEKVDQALTRLPDF 452
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7C3G148_9CHLR (Tryptophan synthase beta chain n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C3G148_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 3.570e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 GHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLPQ 120
            GHGH DLAAYD YL G + DYAYPE KV EAL+HLP+
Sbjct:  415 GHGHFDLAAYDEYLSGRMQDYAYPEEKVKEALTHLPK 451
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BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Match: A0A7W8AF45_9ACTN (Tryptophan synthase beta chain n=2 Tax=Nonomuraea TaxID=83681 RepID=A0A7W8AF45_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 4.870e-11
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLP 117
            ALCGHGH DL AYDRYL GE+ DYA P+ +V++AL++LP
Sbjct:  398 ALCGHGHFDLGAYDRYLAGELEDYALPQERVDQALANLP 436
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77370.18217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8LGP1_9ACTN2.920e-1269.23Tryptophan synthase beta chain n=3 Tax=Acidimicrob... [more]
A0A4R5E190_9ACTN4.430e-1264.10TrpB-like pyridoxal-phosphate dependent enzyme (Fr... [more]
A0A7W3QME0_ACTNM7.440e-1271.79Tryptophan synthase beta chain n=2 Tax=Actinomadur... [more]
A0A7Y1XT28_9ACTN2.260e-1169.23TrpB-like pyridoxal phosphate-dependent enzyme n=1... [more]
UPI00066C32C22.600e-1166.67TrpB-like pyridoxal phosphate-dependent enzyme n=2... [more]
A0A7Y2A324_9ACTN2.610e-1168.42Tryptophan synthase beta chain n=1 Tax=Acidimicrob... [more]
A0A6I1ZPJ2_9CHLR3.570e-1170.27Tryptophan synthase beta chain n=1 Tax=Dehalococco... [more]
A0A7V8Z347_9ACTN3.570e-1160.98Tryptophan synthase beta chain n=1 Tax=Acidimicrob... [more]
A0A7C3G148_9CHLR3.570e-1172.97Tryptophan synthase beta chain n=1 Tax=Dehalococco... [more]
A0A7W8AF45_9ACTN4.870e-1166.67Tryptophan synthase beta chain n=2 Tax=Nonomuraea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77370contigM-pyrifera_M_contig77370:3..128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog1122611.KB903950_gene6479
Preferred nametrpB
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01696,ko:K06001
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
EggNOG OGs2GP7D@201174,4EIEJ@85012,COG1350@1,COG1350@2
EC4.2.1.20
COG Functional cat.E
Best tax levelStreptosporangiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.5203645-CDS-M-pyrifera_M_contig77370:2..1281622816674.5203645-CDS-M-pyrifera_M_contig77370:2..128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77370 3..128 +
1692278112.2528555-CDS-M-pyrifera_M_contig77370:2..1281692278112.2528555-CDS-M-pyrifera_M_contig77370:2..128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77370 3..128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77370.18217.1prot_M-pyrifera_M_contig77370.18217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77370 3..128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77370.18217.1

>prot_M-pyrifera_M_contig77370.18217.1 ID=prot_M-pyrifera_M_contig77370.18217.1|Name=mRNA_M-pyrifera_M_contig77370.18217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
ALCGHGHLDLAAYDRYLGGEVVDYAYPEAKVNEALSHLPQW*
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mRNA from alignment at M-pyrifera_M_contig77370:3..128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77370.18217.1 ID=mRNA_M-pyrifera_M_contig77370.18217.1|Name=mRNA_M-pyrifera_M_contig77370.18217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:3..128+ (Macrocystis pyrifera P11B4 male)
GCGCTCTGTGGGCACGGACATCTCGACCTCGCCGCATACGATCGCTACCT
GGGTGGTGAAGTCGTCGACTACGCCTATCCCGAAGCGAAGGTGAACGAGG
CGCTCTCACACCTTCCACAATGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77370:3..128+

>mRNA_M-pyrifera_M_contig77370.18217.1 ID=mRNA_M-pyrifera_M_contig77370.18217.1|Name=mRNA_M-pyrifera_M_contig77370.18217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig77370:3..128+ (Macrocystis pyrifera P11B4 male)
GCGCTCTGTGGGCACGGACATCTCGACCTCGCCGCATACGATCGCTACCT
GGGTGGTGAAGTCGTCGACTACGCCTATCCCGAAGCGAAGGTGAACGAGG
CGCTCTCACACCTTCCACAATGGTGAGCGCTCTGTGGGCACGGACATCTC
GACCTCGCCGCATACGATCGCTACCTGGGTGGTGAAGTCGTCGACTACGC
CTATCCCGAAGCGAAGGTGAACGAGGCGCTCTCACACCTTCCACAATGGT
GA
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