mRNA_M-pyrifera_M_contig77286.18210.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77286.18210.1
Unique NamemRNA_M-pyrifera_M_contig77286.18210.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77286.18210.1 vs. uniprot
Match: UPI001F4A9F93 (hypothetical protein n=1 Tax=Belliella kenyensis TaxID=1472724 RepID=UPI001F4A9F93)

HSP 1 Score: 48.9 bits (115), Expect = 3.480e-5
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1 
Query:    1 EQLEIPLNNNSGIPFYEDQ--LGVYVEGFDIDNQGDLYFAGGAE-----ETWITRFSNDKMLYK 171
            EQ+ IPLN NSG+PF  D    G  +EGFD+D  G  YF   +E      + +  F  +K++YK
Sbjct:   75 EQIIIPLNLNSGVPFLNDVNIYGYIIEGFDVDESGLFYFLVNSEVQSGNSSILACFEKNKLVYK 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77286.18210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001F4A9F933.480e-540.63hypothetical protein n=1 Tax=Belliella kenyensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77286contigM-pyrifera_M_contig77286:267..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.9291394-CDS-M-pyrifera_M_contig77286:266..4371622816673.9291394-CDS-M-pyrifera_M_contig77286:266..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77286 267..437 -
1692278111.8561385-CDS-M-pyrifera_M_contig77286:266..4371692278111.8561385-CDS-M-pyrifera_M_contig77286:266..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77286 267..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77286.18210.1prot_M-pyrifera_M_contig77286.18210.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77286 267..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77286.18210.1

>prot_M-pyrifera_M_contig77286.18210.1 ID=prot_M-pyrifera_M_contig77286.18210.1|Name=mRNA_M-pyrifera_M_contig77286.18210.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
EQLEIPLNNNSGIPFYEDQLGVYVEGFDIDNQGDLYFAGGAEETWITRFS
NDKMLYK
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mRNA from alignment at M-pyrifera_M_contig77286:267..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77286.18210.1 ID=mRNA_M-pyrifera_M_contig77286.18210.1|Name=mRNA_M-pyrifera_M_contig77286.18210.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig77286:267..437- (Macrocystis pyrifera P11B4 male)
GAGCAATTAGAAATCCCATTAAACAATAATAGTGGGATTCCATTCTATGA
AGATCAACTTGGTGTTTATGTGGAAGGGTTTGATATTGATAATCAGGGGG
ACTTATATTTTGCCGGAGGAGCGGAAGAAACTTGGATTACAAGATTCTCC
AATGACAAGATGCTTTATAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77286:267..437-

>mRNA_M-pyrifera_M_contig77286.18210.1 ID=mRNA_M-pyrifera_M_contig77286.18210.1|Name=mRNA_M-pyrifera_M_contig77286.18210.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig77286:267..437- (Macrocystis pyrifera P11B4 male)
GAGCAATTAGAAATCCCATTAAACAATAATAGTGGGATTCCATTCTATGA
AGATCAACTTGGTGTTTATGTGGAAGGGTTTGATATTGATAATCAGGGGG
ACTTATATTTTGCCGGAGGAGCGGAAGAAACTTGGATTACAAGATTCTCC
AATGACAAGATGCTTTATAAAGAGCAATTAGAAATCCCATTAAACAATAA
TAGTGGGATTCCATTCTATGAAGATCAACTTGGTGTTTATGTGGAAGGGT
TTGATATTGATAATCAGGGGGACTTATATTTTGCCGGAGGAGCGGAAGAA
ACTTGGATTACAAGATTCTCCAATGACAAGATGCTTTATAAA
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