mRNA_M-pyrifera_M_contig77281.18208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77281.18208.1
Unique NamemRNA_M-pyrifera_M_contig77281.18208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: A0A7W5AZE0_9BACL (Alpha-tubulin suppressor-like RCC1 family protein n=1 Tax=Paenibacillus phyllosphaerae TaxID=274593 RepID=A0A7W5AZE0_9BACL)

HSP 1 Score: 71.6 bits (174), Expect = 8.960e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            V+ G  +  V    G+V+ WG N YGQVG+GS +G I    K++G+  +  +S G+ H +ALD DG +W WG  V G LG
Sbjct:   69 VAAGFDHALVLTEDGTVYAWGDNTYGQVGIGSAKGIISGPQKIDGLPRITQISAGFRHSLALDADGRIWAWGNNVAGQLG 148          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: UPI001586DAA4 (hypothetical protein n=1 Tax=Paenibacillus taichungensis TaxID=484184 RepID=UPI001586DAA4)

HSP 1 Score: 67.8 bits (164), Expect = 2.130e-11
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGV------ESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            V  G  + A     G+VW WG N  GQ+G+GS+  + +  T+V+G  GV       SVS G+ H VA+D DG LW WG    GALG
Sbjct:  146 VDGGEHHGAAVRKDGTVWSWGVNKRGQLGIGSKSSYREYATQVKGPGGVGYLNNIASVSAGYRHTVAIDADGTLWAWGDNSTGALG 231          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: UPI00165F43EF (hypothetical protein n=1 Tax=Paenibacillus sp. WST5 TaxID=2770274 RepID=UPI00165F43EF)

HSP 1 Score: 66.2 bits (160), Expect = 7.280e-11
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            V+ G  +  V   +G+++ WG N YGQVG+ S +G +    K+EG+  +  +S G+ H +ALD +G +W WG  + G LG
Sbjct:   70 VAAGFDHSLVLTENGTMYAWGDNTYGQVGINSAKGVVSGPQKIEGLPKINQISAGFRHSMALDLEGNVWVWGNNIAGQLG 149          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: A0A7S4MBR9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MBR9_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 1.040e-10
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            VSCG+   A  D  GS+W +G N  GQ+G+G     +   TKV G+  + SV CG+ H + +D + ELWG+G    G LG
Sbjct:   58 VSCGQGFSACVDSGGSLWVYGENERGQLGIGRTSQKLKTPTKVSGLPPIRSVHCGYSHTLCIDENSELWGFGVNYWGQLG 137          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: UPI0018F79DB6 (hypothetical protein n=1 Tax=Paenibacillus sp. YIM B00362 TaxID=2799335 RepID=UPI0018F79DB6)

HSP 1 Score: 65.5 bits (158), Expect = 1.360e-10
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    4 SCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            + G  +  V    G+V+ WG N YGQVG+ S +G +    K+EG+  +  +S G+ H +ALD DG +W WG  + G LG
Sbjct:   71 AAGFDHALVLTEKGTVYAWGDNTYGQVGIDSAKGIVSGPQKIEGLPLITEISAGFRHSMALDADGNVWVWGNNIAGQLG 149          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: UPI00157AB1D2 (hypothetical protein n=3 Tax=unclassified Myxococcus TaxID=2648731 RepID=UPI00157AB1D2)

HSP 1 Score: 65.5 bits (158), Expect = 1.410e-10
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            VS    +V      G+VWGWG+N +GQ+G+G+E       T+V+ +  V  VS G  H +AL +DG +W WG G  G LG
Sbjct:  271 VSTSNLSVMGLRSDGTVWGWGNNFFGQLGIGTESSAHYTPTQVQNLTNVRMVSAGPFHSLALRWDGTIWAWGAGYYGKLG 350          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: A0A7X8PYK3_9CLOT (Dockerin domain-containing protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8PYK3_9CLOT)

HSP 1 Score: 65.5 bits (158), Expect = 1.430e-10
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            VSCG  +       G+VW WG N YGQ+G+  E        +++G++G+  +S G  H +AL  DG +W WG    G LG
Sbjct:  114 VSCGETHTIALKKDGTVWAWGYNSYGQLGLNEENEIERTPKQIDGLKGITKISAGKRHSLALKSDGTVWAWGYNYYGQLG 193          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: F8CMD0_MYXFH (Regulator of chromosome condensation n=2 Tax=Myxococcaceae TaxID=31 RepID=F8CMD0_MYXFH)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   43 GSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            GS+W WG N  GQVG GS    +    +V+G+ G+ +++ G  HV+ALD +G +WGWG    G  G
Sbjct:  118 GSLWAWGQNSSGQVGTGSTSVSVHTPAQVQGLPGIRAIAAGLNHVLALDTEGRVWGWGANTSGQTG 183          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: A0A286NVN8_9DELT (Regulator of chromosome condensation n=1 Tax=Corallococcus macrosporus DSM 14697 TaxID=1189310 RepID=A0A286NVN8_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 2.710e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   43 GSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWGCGVQGALG 240
            GS+W WG N  GQVG GS    +   T+V+G+  + +++ G  HV+ALD +G +WGWG    G  G
Sbjct:  155 GSLWAWGQNSSGQVGTGSTSVSVHTPTQVQGLPAIRAIAAGLNHVLALDTEGRVWGWGANTSGQTG 220          
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Match: A0A137PEP6_CONC2 (RCC1/BLIP-II protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PEP6_CONC2)

HSP 1 Score: 64.3 bits (155), Expect = 3.270e-10
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVESVSCGWEHVVALDFDGELWGWG 216
            VSCG R+  + D  G+V+ +G+N + Q+G  +EE     ++KV     ++S+SCGW+H +AL  DGEL GWG
Sbjct:  199 VSCGERHTVMLDTLGNVFSFGNNRFFQLGYSTEEQSSFNISKVPLNSPIKSISCGWQHTIALTTDGELIGWG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77281.18208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W5AZE0_9BACL8.960e-1342.50Alpha-tubulin suppressor-like RCC1 family protein ... [more]
UPI001586DAA42.130e-1143.02hypothetical protein n=1 Tax=Paenibacillus taichun... [more]
UPI00165F43EF7.280e-1137.50hypothetical protein n=1 Tax=Paenibacillus sp. WST... [more]
A0A7S4MBR9_9EUKA1.040e-1041.25Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI0018F79DB61.360e-1039.24hypothetical protein n=1 Tax=Paenibacillus sp. YIM... [more]
UPI00157AB1D21.410e-1041.25hypothetical protein n=3 Tax=unclassified Myxococc... [more]
A0A7X8PYK3_9CLOT1.430e-1037.50Dockerin domain-containing protein n=1 Tax=Clostri... [more]
F8CMD0_MYXFH2.000e-1042.42Regulator of chromosome condensation n=2 Tax=Myxoc... [more]
A0A286NVN8_9DELT2.710e-1042.42Regulator of chromosome condensation n=1 Tax=Coral... [more]
A0A137PEP6_CONC23.270e-1043.06RCC1/BLIP-II protein n=1 Tax=Conidiobolus coronatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77281contigM-pyrifera_M_contig77281:511..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.4
Seed ortholog evalue3.6e-09
Seed eggNOG ortholog483219.LILAB_10430
KEGG koko:K17713
KEGG TC1.B.33.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative metal-binding motif
EggNOG OGs1R504@1224,2WKUI@28221,2YY0K@29,42QHC@68525,COG1520@1,COG1520@2,COG5184@1,COG5184@2
COG Functional cat.DZ
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.84842-CDS-M-pyrifera_M_contig77281:510..7561622816673.84842-CDS-M-pyrifera_M_contig77281:510..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77281 511..756 -
1692278111.8241653-CDS-M-pyrifera_M_contig77281:510..7561692278111.8241653-CDS-M-pyrifera_M_contig77281:510..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77281 511..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77281.18208.1prot_M-pyrifera_M_contig77281.18208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77281 511..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77281.18208.1

>prot_M-pyrifera_M_contig77281.18208.1 ID=prot_M-pyrifera_M_contig77281.18208.1|Name=mRNA_M-pyrifera_M_contig77281.18208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
VSCGRRNVAVCDVSGSVWGWGSNVYGQVGVGSEEGWIDVLTKVEGVRGVE
SVSCGWEHVVALDFDGELWGWGCGVQGALGGG
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mRNA from alignment at M-pyrifera_M_contig77281:511..756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77281.18208.1 ID=mRNA_M-pyrifera_M_contig77281.18208.1|Name=mRNA_M-pyrifera_M_contig77281.18208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig77281:511..756- (Macrocystis pyrifera P11B4 male)
GTGAGTTGTGGAAGGAGAAACGTTGCAGTTTGTGATGTCAGTGGGAGTGT GTGGGGATGGGGGTCGAATGTGTATGGTCAAGTTGGTGTAGGGTCCGAGG AAGGATGGATAGATGTGTTGACAAAGGTGGAGGGGGTGAGAGGGGTGGAG AGTGTGAGTTGTGGTTGGGAACATGTTGTTGCGTTGGATTTTGATGGTGA ATTGTGGGGTTGGGGTTGTGGAGTGCAAGGAGCGTTGGGAGGTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77281:511..756-

>mRNA_M-pyrifera_M_contig77281.18208.1 ID=mRNA_M-pyrifera_M_contig77281.18208.1|Name=mRNA_M-pyrifera_M_contig77281.18208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig77281:511..756- (Macrocystis pyrifera P11B4 male)
GTGAGTTGTGGAAGGAGAAACGTTGCAGTTTGTGATGTCAGTGGGAGTGT
GTGGGGATGGGGGTCGAATGTGTATGGTCAAGTTGGTGTAGGGTCCGAGG
AAGGATGGATAGATGTGTTGACAAAGGTGGAGGGGGTGAGAGGGGTGGAG
AGTGTGAGTTGTGGTTGGGAACATGTTGTTGCGTTGGATTTTGATGGTGA
ATTGTGGGGTTGGGGTTGTGGAGTGCAAGGAGCGTTGGGAGGTGGGGTGA
GTTGTGGAAGGAGAAACGTTGCAGTTTGTGATGTCAGTGGGAGTGTGTGG
GGATGGGGGTCGAATGTGTATGGTCAAGTTGGTGTAGGGTCCGAGGAAGG
ATGGATAGATGTGTTGACAAAGGTGGAGGGGGTGAGAGGGGTGGAGAGTG
TGAGTTGTGGTTGGGAACATGTTGTTGCGTTGGATTTTGATGGTGAATTG
TGGGGTTGGGGTTGTGGAGTGCAAGGAGCGTTGGGAGGTGGG
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