mRNA_M-pyrifera_M_contig77166.18185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77166.18185.1
Unique NamemRNA_M-pyrifera_M_contig77166.18185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77166.18185.1 vs. uniprot
Match: A0A388JRW7_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388JRW7_CHABU)

HSP 1 Score: 51.2 bits (121), Expect = 5.720e-6
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    1 PPSQQMYQASLLRVVKKTAGEGLFPLFIVDSSHPSRRHLEDVWGAAKRAGFEAYVVD 171
            P  +++Y+AS+ +  KKT  EG F   IVD  +         W AAKR+G+E YV+D
Sbjct: 1208 PEMEEVYKASMFKAFKKTLEEGRFTFIIVDDRNVLVADFSQYWAAAKRSGYEVYVLD 1264
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77166.18185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A388JRW7_CHABU5.720e-640.35Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77166contigM-pyrifera_M_contig77166:88..261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.573631-UTR-M-pyrifera_M_contig77166:87..1021622816672.573631-UTR-M-pyrifera_M_contig77166:87..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77166 88..102 +
1692278111.0233216-UTR-M-pyrifera_M_contig77166:87..1021692278111.0233216-UTR-M-pyrifera_M_contig77166:87..102Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77166 88..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816672.5882175-CDS-M-pyrifera_M_contig77166:102..2611622816672.5882175-CDS-M-pyrifera_M_contig77166:102..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77166 103..261 +
1692278111.0346658-CDS-M-pyrifera_M_contig77166:102..2611692278111.0346658-CDS-M-pyrifera_M_contig77166:102..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77166 103..261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77166.18185.1prot_M-pyrifera_M_contig77166.18185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77166 103..261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77166.18185.1

>prot_M-pyrifera_M_contig77166.18185.1 ID=prot_M-pyrifera_M_contig77166.18185.1|Name=mRNA_M-pyrifera_M_contig77166.18185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MYQASLLRVVKKTAGEGLFPLFIVDSSHPSRRHLEDVWGAAKRAGFEAYV
VDL
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mRNA from alignment at M-pyrifera_M_contig77166:88..261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77166.18185.1 ID=mRNA_M-pyrifera_M_contig77166.18185.1|Name=mRNA_M-pyrifera_M_contig77166.18185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig77166:88..261+ (Macrocystis pyrifera P11B4 male)
CCTCCCTCCCAACAGATGTACCAGGCCAGTCTGCTCCGCGTGGTGAAGAA
GACAGCGGGGGAAGGTTTGTTCCCGCTGTTCATCGTGGATAGCTCCCATC
CTTCTAGGCGTCACCTAGAGGACGTTTGGGGTGCAGCGAAACGGGCCGGT
TTCGAGGCCTACGTGGTAGACCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77166:88..261+

>mRNA_M-pyrifera_M_contig77166.18185.1 ID=mRNA_M-pyrifera_M_contig77166.18185.1|Name=mRNA_M-pyrifera_M_contig77166.18185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig77166:88..261+ (Macrocystis pyrifera P11B4 male)
ATGTACCAGGCCAGTCTGCTCCGCGTGGTGAAGAAGACAGCGGGGGAAGG
TTTGTTCCCGCTGTTCATCGTGGATAGCTCCCATCCTTCTAGGCGTCACC
TAGAGGACGTTTGGGGTGCAGCGAAACGGGCCGGTTTCGAGGCCTACGTG
GTAGACCTGATGTACCAGGCCAGTCTGCTCCGCGTGGTGAAGAAGACAGC
GGGGGAAGGTTTGTTCCCGCTGTTCATCGTGGATAGCTCCCATCCTTCTA
GGCGTCACCTAGAGGACGTTTGGGGTGCAGCGAAACGGGCCGGTTTCGAG
GCCTACGTGGTAGACCTG
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