mRNA_M-pyrifera_M_contig76795.18096.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76795.18096.1
Unique NamemRNA_M-pyrifera_M_contig76795.18096.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A2G2CHE3_9SPHN (17 kDa surface antigen n=2 Tax=Sphingomonadales TaxID=204457 RepID=A0A2G2CHE3_9SPHN)

HSP 1 Score: 93.2 bits (230), Expect = 1.880e-22
Identity = 84/103 (81.55%), Postives = 86/103 (83.50%), Query Frame = 1
Query:    1 YEQVRNNGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXX-----YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            Y+QVR NGYREYRRGD Y   RYRDRR+XXXXXXXXXXXXXXXXX     YRGC RGTGGTIIGAIAGGLLGNEVA RGDK  XXXXXXXXXXX   AIDGNC
Sbjct:   19 YQQVRGNGYREYRRGDTYXXHRYRDRRHXXXXXXXXXXXXXXXXXXXDRRYRGCDRGTGGTIIGAIAGGLLGNEVARRGDKTEXXXXXXXXXXXAGRAIDGNC 121          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: UPI001593B9D2 (glycine zipper 2TM domain-containing protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593B9D2)

HSP 1 Score: 75.1 bits (183), Expect = 3.330e-15
Identity = 78/98 (79.59%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 YEQVRNNGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            YEQ RN+G R YRR         RDRR XXXXXXXXXXXXXXXXX RGC RGTGGTIIGAIAGGLLGNEVAGRG K  XXXXXXXXXXXXX AIDGNC
Sbjct:   37 YEQARNDGRRVYRRXXXXXXXXXRDRRDXXXXXXXXXXXXXXXXXXRGCDRGTGGTIIGAIAGGLLGNEVAGRGSKTEXXXXXXXXXXXXXRAIDGNC 134          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A1N6GZW5_9SPHN (17 kDa surface antigen n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6GZW5_9SPHN)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-14
Identity = 74/89 (83.15%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   28 REYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            R YRRGD YRG RY DRR XXXXXXXXXXXXXXXXX  GC RGTGGTIIGAIAGGLLGNE+A RGDK  XXXXXXXXXXX   AIDGNC
Sbjct:   48 RYYRRGDYYRGDRYYDRR-XXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEIARRGDKTEXXXXXXXXXXXAGRAIDGNC 135          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A6H2DRM8_9SPHN (17 kDa surface antigen n=2 Tax=Parasphingorhabdus halotolerans TaxID=2725558 RepID=A0A6H2DRM8_9SPHN)

HSP 1 Score: 72.0 bits (175), Expect = 3.440e-14
Identity = 78/99 (78.79%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 YEQVRN-NGYREYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            Y+QV N +GYREYRRGD YR  R      XXXXXXXXXXXXXXXXX  GC RGTGGTIIGAIAGGLLGNEVA RGDK  XXXXXXXXXXXX  AIDGNC
Sbjct:   19 YQQVGNRDGYREYRRGDYYRNDRXXXXX-XXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEVARRGDKTVXXXXXXXXXXXXGRAIDGNC 116          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A127MGA8_9SPHN (17 kDa surface antigen n=5 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A127MGA8_9SPHN)

HSP 1 Score: 65.9 bits (159), Expect = 1.340e-11
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  139 RGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            RGC RGTGGTIIGAIAGGLLGNE+AGRGDK  XXXXXXXXXX    AIDGNC
Sbjct:   83 RGCDRGTGGTIIGAIAGGLLGNEIAGRGDKTEXXXXXXXXXXLAGRAIDGNC 134          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: UPI001E64A073 (glycine zipper 2TM domain-containing protein n=4 Tax=Sphingomonadaceae TaxID=41297 RepID=UPI001E64A073)

HSP 1 Score: 64.7 bits (156), Expect = 4.490e-11
Identity = 66/112 (58.93%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 YEQVRNNGY--------REYRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYR------GCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            Y Q  N+GY        R YRRGD YR  RY DR  XXXXXXXXXXXXXXXXX        GC RGTGGTIIGAIAGGLLGNEVAGRG K                AID NC
Sbjct:   31 YYQGYNDGYYQRVGDDRRYYRRGDYYRDDRYYDRXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDRGTGGTIIGAIAGGLLGNEVAGRGSKTEGAIIGGAVGALAGRAIDRNC 142          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A2W6TGC6_SPHSX (17 kDa surface antigen n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A2W6TGC6_SPHSX)

HSP 1 Score: 58.9 bits (141), Expect = 5.920e-9
Identity = 53/100 (53.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 YEQVRNNGYRE--YRRGDIYRGKRYRDRRYXXXXXXXXXXXXXXXXXYRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            Y+Q+   GY    Y RGD  RG  Y DR YXXXXXXXXXXX         C +GTGGTIIGAIAGGLLGN VAGRGD+                AID +C
Sbjct:   34 YQQIDQRGYERDGYDRGDSRRGYGYDDRGYXXXXXXXXXXXRGRGR----CDKGTGGTIIGAIAGGLLGNSVAGRGDRGVGTIVGAGVGALAGRAIDRDC 129          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A6M5J894_9SPHN (17 kDa surface antigen n=1 Tax=Sphingomonas sp. AP4-R1 TaxID=2735134 RepID=A0A6M5J894_9SPHN)

HSP 1 Score: 54.3 bits (129), Expect = 3.630e-7
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 1
Query:  136 YRG---CGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            YRG   C +GTGGTIIGAIAGGLLGN VAGRGD+                AID +C
Sbjct:   74 YRGRGRCDKGTGGTIIGAIAGGLLGNSVAGRGDRGVGTIVGAGVGALAGRAIDRDC 129          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: A0A239HWR0_9SPHN (17 kDa surface antigen n=1 Tax=Sphingopyxis indica TaxID=436663 RepID=A0A239HWR0_9SPHN)

HSP 1 Score: 53.1 bits (126), Expect = 1.110e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  136 YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDK 228
            YR C  GTGGT+IGAIAGGL GNE+AGRGDK
Sbjct:   78 YRQCDNGTGGTVIGAIAGGLAGNEIAGRGDK 108          
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Match: UPI001575C56C (glycine zipper 2TM domain-containing protein n=1 Tax=Sphingomonas bacterium TaxID=1895847 RepID=UPI001575C56C)

HSP 1 Score: 52.4 bits (124), Expect = 1.320e-6
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 1
Query:  136 YRGCGRGTGGTIIGAIAGGLLGNEVAGRGDKXXXXXXXXXXXXXXXXAIDGNC 294
            YR C +GTGGTI+GAIAGGLLGN +AGRGD+                 ID  C
Sbjct:   56 YRRCDKGTGGTILGAIAGGLLGNGIAGRGDRGVGTIVGAGVGALAGREIDRGC 108          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76795.18096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G2CHE3_9SPHN1.880e-2281.5517 kDa surface antigen n=2 Tax=Sphingomonadales Ta... [more]
UPI001593B9D23.330e-1579.59glycine zipper 2TM domain-containing protein n=1 T... [more]
A0A1N6GZW5_9SPHN1.370e-1483.1517 kDa surface antigen n=1 Tax=Parasphingorhabdus ... [more]
A0A6H2DRM8_9SPHN3.440e-1478.7917 kDa surface antigen n=2 Tax=Parasphingorhabdus ... [more]
A0A127MGA8_9SPHN1.340e-1184.6217 kDa surface antigen n=5 Tax=Sphingomonadaceae T... [more]
UPI001E64A0734.490e-1158.93glycine zipper 2TM domain-containing protein n=4 T... [more]
A0A2W6TGC6_SPHSX5.920e-953.0017 kDa surface antigen n=1 Tax=Sphingomonas sp. Ta... [more]
A0A6M5J894_9SPHN3.630e-755.3617 kDa surface antigen n=1 Tax=Sphingomonas sp. AP... [more]
A0A239HWR0_9SPHN1.110e-680.6517 kDa surface antigen n=1 Tax=Sphingopyxis indica... [more]
UPI001575C56C1.320e-650.94glycine zipper 2TM domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76795contigM-pyrifera_M_contig76795:15..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.3538113-CDS-M-pyrifera_M_contig76795:14..3111622816667.3538113-CDS-M-pyrifera_M_contig76795:14..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76795 15..311 +
1692278107.9800723-CDS-M-pyrifera_M_contig76795:14..3111692278107.9800723-CDS-M-pyrifera_M_contig76795:14..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76795 15..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76795.18096.1prot_M-pyrifera_M_contig76795.18096.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76795 15..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76795.18096.1

>prot_M-pyrifera_M_contig76795.18096.1 ID=prot_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
YEQVRNNGYREYRRGDIYRGKRYRDRRYYRDDRRYRDRRSYSDRRYRGCG
RGTGGTIIGAIAGGLLGNEVAGRGDKTEGTIIGGAVGALAGRAIDGNC*
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mRNA from alignment at M-pyrifera_M_contig76795:15..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76795.18096.1 ID=mRNA_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig76795:15..311+ (Macrocystis pyrifera P11B4 male)
TATGAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATAT CTATCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCC GCTATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGC CGCGGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGG CAACGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCG GAGCAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76795:15..311+

>mRNA_M-pyrifera_M_contig76795.18096.1 ID=mRNA_M-pyrifera_M_contig76795.18096.1|Name=mRNA_M-pyrifera_M_contig76795.18096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig76795:15..311+ (Macrocystis pyrifera P11B4 male)
TATGAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATAT
CTATCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCC
GCTATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGC
CGCGGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGG
CAACGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCG
GAGCAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGATAT
GAGCAAGTCCGTAACAATGGATATCGCGAATATCGACGCGGGGATATCTA
TCGCGGCAAACGCTATCGGGATCGCCGCTACTATCGGGATGATCGCCGCT
ATCGTGATCGTCGATCTTATAGTGATCGCCGCTACCGTGGATGCGGCCGC
GGGACGGGCGGAACGATTATTGGTGCGATAGCCGGCGGACTGCTGGGCAA
CGAAGTGGCTGGCCGCGGTGACAAAACCGAAGGAACGATTATCGGCGGAG
CAGTCGGTGCTCTCGCGGGGCGTGCCATCGACGGCAATTGCTGA
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