mRNA_M-pyrifera_M_contig76728.18083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76728.18083.1
Unique NamemRNA_M-pyrifera_M_contig76728.18083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: D7FTG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.300e-11
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 MIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            MI+RY GACN+QTVIKEASF G+GGGY+ +GSDDGR
Sbjct:  714 MIQRYTGACNVQTVIKEASFLGDGGGYVTSGSDDGR 749
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: G5AAS4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AAS4_PHYSP)

HSP 1 Score: 55.5 bits (132), Expect = 7.050e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            D++ RY+G CN+QT IKEASFFG    YI AGSDDGR
Sbjct:  553 DVLRRYIGYCNVQTDIKEASFFGKNDAYIIAGSDDGR 589
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: M4BB78_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB78_HYAAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.050e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            D++ RY+G CN+QT IKEASFFG    YI AGSDDGR
Sbjct:  549 DVLRRYIGYCNVQTDIKEASFFGRNDAYIIAGSDDGR 585
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A3M6VWV5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VWV5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.070e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            D++ RY+G CN+QT IKEASFFG    YI AGSDDGR
Sbjct:  419 DVLRRYIGYCNVQTDIKEASFFGKNDAYIIAGSDDGR 455
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A662WFZ7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFZ7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            D++ RY+G CN+QT IKEA+FFG    YI AGSDDGR
Sbjct:  551 DVLRRYIGYCNVQTDIKEATFFGKNDAYIVAGSDDGR 587
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A1Y1HJK1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HJK1_KLENI)

HSP 1 Score: 53.9 bits (128), Expect = 2.460e-7
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            DM++RYVG CN  T IK+ASF G GG ++A+GSDDGR
Sbjct:  766 DMVQRYVGHCNTGTDIKQASFLGGGGEFVASGSDDGR 802
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A6A3IP43_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IP43_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.370e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDG 108
            D++ RY+G CN+QT IKEASFFG    YI AGSDDG
Sbjct:  551 DVLRRYIGYCNVQTDIKEASFFGKNDAYIIAGSDDG 586
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: UPI000B8D10BF (WD and tetratricopeptide repeats protein 1 isoform X1 n=3 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D10BF)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            DM +RYVG CN+ T IK+ASF G GG Y+A+GSDDGR
Sbjct:  633 DMKQRYVGHCNVGTDIKQASFLGWGGEYVASGSDDGR 669
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A251VHF0_HELAN (Putative transducin family protein / WD-40 repeat family protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VHF0_HELAN)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-7
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            DM +RYVG CN+ T IK+ASF G  G YIAAGSDDGR
Sbjct:  605 DMKQRYVGHCNVGTDIKQASFLGQKGEYIAAGSDDGR 641
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BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Match: A0A8K1FIH9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIH9_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 DMIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR 111
            D + RY+G CN+QT IKEA+FFG    YI AGSDDGR
Sbjct:  571 DAVRRYIGYCNLQTDIKEATFFGPNDAYIVAGSDDGR 607
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76728.18083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTG3_ECTSI5.300e-1177.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
G5AAS4_PHYSP7.050e-867.57Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
M4BB78_HYAAE7.050e-867.57Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3M6VWV5_9STRA7.070e-867.57Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A662WFZ7_9STRA1.320e-764.86Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1Y1HJK1_KLENI2.460e-764.86Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A6A3IP43_9STRA3.370e-766.67Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
UPI000B8D10BF4.610e-767.57WD and tetratricopeptide repeats protein 1 isoform... [more]
A0A251VHF0_HELAN4.610e-770.27Putative transducin family protein / WD-40 repeat ... [more]
A0A8K1FIH9_PYTOL4.610e-764.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76728contigM-pyrifera_M_contig76728:497..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog2880.D7FTG3
Preferred nameWDTC1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11795,ko:K11804,ko:K11807,ko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000122,GO:0000151,GO:0001101,GO:0001701,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006355,GO:0006357,GO:0006464,GO:0006629,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008361,GO:0009269,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010605,GO:0010629,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0016043,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019318,GO:0019538,GO:0019725,GO:0019899,GO:0030234,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032991,GO:0035264,GO:0036211,GO:0040007,GO:0042221,GO:0042304,GO:0042393,GO:0042592,GO:0042826,GO:0043009,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043434,GO:0043687,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045717,GO:0045833,GO:0045892,GO:0045922,GO:0045934,GO:0046890,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051055,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055082,GO:0060255,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0098772,GO:1901564,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905952,GO:1905953,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.negative regulation of fatty acid biosynthetic process
EggNOG OGsKOG1310@2759,KOG1334@1
EC2.1.1.43
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Exons1
Model size111
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.7822342-UTR-M-pyrifera_M_contig76728:496..4991622816666.7822342-UTR-M-pyrifera_M_contig76728:496..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76728 497..499 +
1692278107.685546-UTR-M-pyrifera_M_contig76728:496..4991692278107.685546-UTR-M-pyrifera_M_contig76728:496..499Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig76728 497..499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.7987566-CDS-M-pyrifera_M_contig76728:499..6071622816666.7987566-CDS-M-pyrifera_M_contig76728:499..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76728 500..607 +
1692278107.7127194-CDS-M-pyrifera_M_contig76728:499..6071692278107.7127194-CDS-M-pyrifera_M_contig76728:499..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76728 500..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76728.18083.1prot_M-pyrifera_M_contig76728.18083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76728 500..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76728.18083.1

>prot_M-pyrifera_M_contig76728.18083.1 ID=prot_M-pyrifera_M_contig76728.18083.1|Name=mRNA_M-pyrifera_M_contig76728.18083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
MIERYVGACNIQTVIKEASFFGNGGGYIAAGSDDGR
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mRNA from alignment at M-pyrifera_M_contig76728:497..607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76728.18083.1 ID=mRNA_M-pyrifera_M_contig76728.18083.1|Name=mRNA_M-pyrifera_M_contig76728.18083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig76728:497..607+ (Macrocystis pyrifera P11B4 male)
GACATGATCGAGCGGTATGTGGGCGCTTGCAACATCCAGACGGTCATCAA
AGAGGCCTCTTTTTTTGGCAACGGCGGGGGCTACATCGCCGCGGGCAGCG
ACGATGGCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76728:497..607+

>mRNA_M-pyrifera_M_contig76728.18083.1 ID=mRNA_M-pyrifera_M_contig76728.18083.1|Name=mRNA_M-pyrifera_M_contig76728.18083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig76728:497..607+ (Macrocystis pyrifera P11B4 male)
ATGATCGAGCGGTATGTGGGCGCTTGCAACATCCAGACGGTCATCAAAGA
GGCCTCTTTTTTTGGCAACGGCGGGGGCTACATCGCCGCGGGCAGCGACG
ATGGCAGGATGATCGAGCGGTATGTGGGCGCTTGCAACATCCAGACGGTC
ATCAAAGAGGCCTCTTTTTTTGGCAACGGCGGGGGCTACATCGCCGCGGG
CAGCGACGATGGCAGG
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