mRNA_M-pyrifera_M_contig76702.18079.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76702.18079.1
Unique NamemRNA_M-pyrifera_M_contig76702.18079.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Match: A0A6L8EXI2_9BACT (WD40 repeat domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6L8EXI2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.110e-5
Identity = 40/156 (25.64%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:  154 LYLVRFSPDGRHVLCG-GIGAWESPVILSVPDLRVVGECGGGSGDVYGGAWMPDGETFVAGGGDDGVLRVWRKEGGDVVCEKRVGMGSVC----SVDVHPDGREYAVGFHEGKKVVIFSVESHEELRRIDIPGYVRSARYSPDGGRLAVAHESGVV 606
            + L+RFSPDG H++ G  +GAW    +  VPD        G +G V   A+  DG+TF +GG  + V++VW     DV  + ++    +     S+       E  +  +  ++V  +  ++ ++L    +   + +  +S DG  LA+   +G +
Sbjct:   43 INLIRFSPDGTHLVVGTDVGAW----VYDVPDGNETALFTGHTGQVNALAFSSDGKTFASGGFVNPVIQVW-----DVETKSKLSTVPLTREPYSLPALTFYGEILISTNGHREVTYWHADTGQKLSESHLDTSINTVTFSQDGSTLAIGDRNGRI 189
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BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Match: UPI001C000A16 (helix-turn-helix domain-containing protein n=1 Tax=Phycicoccus mangrovi TaxID=2840470 RepID=UPI001C000A16)

HSP 1 Score: 55.5 bits (132), Expect = 1.660e-5
Identity = 31/86 (36.05%), Postives = 43/86 (50.00%), Query Frame = 1 
Query:   25 TCFSCDISPDGRYTVSCGGDGSVMLWDGDGGKVGEVRNPD-GKQLYLVRFSPDGRHVLCGGIGAWE-----SPVILSVPDLRVVGE 264
            T F+     +GR  ++   DGS++LW  DG +       D G  LY  RFSPDG HVL GG+G +      S  + +    R VG+
Sbjct: 1152 TTFTLQFDAEGRRLLAAVNDGSLVLWRRDGTRFTRSLVLDRGTPLYFARFSPDGSHVLAGGLGGYTKLAPTSAALATTSLCRTVGD 1237
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BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Match: UPI001A5210C3 (Uncharacterized protein n=2 Tax=Acrocarpospora phusangensis TaxID=1070424 RepID=UPI001A5210C3)

HSP 1 Score: 53.9 bits (128), Expect = 5.580e-5
Identity = 52/171 (30.41%), Postives = 80/171 (46.78%), Query Frame = 1 
Query:  127 EVRNPDGKQLYLVRFSPDGRHVLCGG----IGAWESP---VILSVPDLRVVGECGGGSGDVYGGAWMPDGETFVA---GGGDDGVLRVWRKEGGDVVCEKRVGMGSVCSVDVHPDGREYAVGFHEGKKVVIFSVESHEELRRIDIPGYVRSARYSPDGGRL-AVAHESGVV 606
            +V  PDG+Q++ +RFS DGRH++ G     +  WE+    ++    + R + E       V   A+  DG T V    G    G+L V     G V  ++ VG   + ++ + PDG   AVG  EG+ V +  +    +L      G V +  +SPDG  L A    +GVV
Sbjct:  752 QVFKPDGRQVFAMRFSVDGRHLVTGDDQGYVSVWEAKTGKLLAQYGEHRRL-EPSKVPPTVLQAAFDADGRTLVTLAEGMSAIGILIVRDMPSGTVRFQREVGQ-RMRTMALSPDGTRIAVGDVEGR-VRVIDLRGGPDLTFRYADGRVAALAFSPDGTHLFAAIRHTGVV 919
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BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Match: A0A2E3DN54_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3DN54_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 8.540e-5
Identity = 45/167 (26.95%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:   31 FSCDISPDGRYTVSCGGDGSVMLWDGDGGKVGEVRNPDGKQLYLVRFSPDGRHVLCGGIGAWESPVILSVPDLRVVGECGGGSGDVYGGAWM-PDGETFVAGGGDDGVLRVWRKEGGDVVCEKRVGMGSVC-SVDVHPDGREYAVGFHEGKKVVIFSVESHEELRRI 525
            +S D S DG+Y V+      ++LWD    +V +        +  VRFSP+G+ +L GG+   +   +++   L      GG +  +   A++  DGE F + G D  ++R+W   GG +   +  GM     S+D  PDG+    G  +G+ + ++S     + ++I
Sbjct:   16 YSVDYSFDGKYIVAGSLSHRILLWDTASWEVRKYTELHADGVSAVRFSPNGKKILTGGLD--KVVKVINTSSLTAEISLGGSNDYIQSVAFIGKDGEQFASTGFDK-LVRIWTI-GGQI--REISGMTERSHSLDTSPDGKYILAGSLQGE-IFVWSPSGEVKFKQI 175
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BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Match: A0A317CMC5_9GAMM (Uncharacterized protein n=1 Tax=Leucothrix pacifica TaxID=1247513 RepID=A0A317CMC5_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 9.770e-5
Identity = 56/189 (29.63%), Postives = 84/189 (44.44%), Query Frame = 1 
Query:   58 RYTVSCGGDGSVMLWD--GDGGKVGEVRNPDGK----QLYLVRFSPDGRHVLCGGIGAWESPVILSVPDLRVVGECGGGSGDVYGGAWMPDGETF-VAGGGDDGVLRVWRKEGGDVVCEKRVGMGSVCSVDVHPDGREYAVGFHEGKKVVIFSVESHEELRRIDIPGYVR--SARYSPDGGRLAVAHES 597
            RY V+   D ++ +WD    G  +  +R P GK    +LY V  SPDG  +  GG  A +S  +    +  ++    G    +    +  DG    VA GG +G+ RV+    G  +       G   SVD    GR  +  + +G  V+     S   L+R    G  R  SAR+SPDG ++AV  E+
Sbjct:   55 RYAVTASDDKTLRVWDIRNQGKLLRTIRPPIGKGNEGKLYAVAISPDGEVIAAGGWTADDSFYLFKRSNGHMIRRIRGLPNVINDLVFSYDGRKLAVALGGSNGI-RVFDSATGRALSSDTQYSGISLSVDFDKQGRLVSASY-DG--VIRLYDPSFRLLKRYRAQGGNRPYSARFSPDGRKIAVGFEN 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76702.18079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6L8EXI2_9BACT1.110e-525.64WD40 repeat domain-containing protein n=1 Tax=Cand... [more]
UPI001C000A161.660e-536.05helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001A5210C35.580e-530.41Uncharacterized protein n=2 Tax=Acrocarpospora phu... [more]
A0A2E3DN54_9PLAN8.540e-526.95Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A317CMC5_9GAMM9.770e-529.63Uncharacterized protein n=1 Tax=Leucothrix pacific... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76702contigM-pyrifera_M_contig76702:104..709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog903818.KI912268_gene1501
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Caspase domain
EggNOG OGs3Y77C@57723,COG3391@1,COG3391@2,COG4249@1,COG4249@2
COG Functional cat.G
Best tax levelAcidobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size606
Cds size606
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.6056433-CDS-M-pyrifera_M_contig76702:103..7091622816666.6056433-CDS-M-pyrifera_M_contig76702:103..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76702 104..709 +
1692278107.6137996-CDS-M-pyrifera_M_contig76702:103..7091692278107.6137996-CDS-M-pyrifera_M_contig76702:103..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76702 104..709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76702.18079.1prot_M-pyrifera_M_contig76702.18079.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76702 104..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76702.18079.1

>prot_M-pyrifera_M_contig76702.18079.1 ID=prot_M-pyrifera_M_contig76702.18079.1|Name=mRNA_M-pyrifera_M_contig76702.18079.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
MGREKHGKTCFSCDISPDGRYTVSCGGDGSVMLWDGDGGKVGEVRNPDGK
QLYLVRFSPDGRHVLCGGIGAWESPVILSVPDLRVVGECGGGSGDVYGGA
WMPDGETFVAGGGDDGVLRVWRKEGGDVVCEKRVGMGSVCSVDVHPDGRE
YAVGFHEGKKVVIFSVESHEELRRIDIPGYVRSARYSPDGGRLAVAHESG
VV
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mRNA from alignment at M-pyrifera_M_contig76702:104..709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76702.18079.1 ID=mRNA_M-pyrifera_M_contig76702.18079.1|Name=mRNA_M-pyrifera_M_contig76702.18079.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig76702:104..709+ (Macrocystis pyrifera P11B4 male)
ATGGGGAGGGAGAAGCATGGGAAGACGTGTTTTTCTTGTGATATATCGCC
TGATGGGAGGTATACGGTATCGTGTGGAGGGGATGGTAGTGTGATGCTGT
GGGATGGGGATGGTGGGAAGGTTGGGGAGGTGAGGAATCCAGATGGAAAG
CAGCTGTACCTTGTTCGTTTCTCTCCTGATGGTCGTCATGTGCTATGTGG
TGGTATTGGAGCTTGGGAATCTCCAGTGATTCTGTCAGTGCCTGATTTGA
GGGTGGTGGGAGAGTGTGGTGGAGGGAGTGGGGATGTGTATGGTGGTGCT
TGGATGCCTGATGGTGAGACATTTGTTGCTGGTGGTGGTGATGATGGTGT
GTTGCGTGTTTGGAGGAAGGAAGGTGGTGATGTGGTGTGTGAGAAGAGGG
TGGGGATGGGATCGGTGTGTAGTGTGGATGTGCATCCTGATGGGAGGGAG
TATGCAGTGGGTTTTCATGAAGGCAAGAAGGTAGTGATTTTCTCTGTGGA
GAGTCATGAGGAGTTGCGTCGTATTGACATTCCTGGCTATGTGCGCAGTG
CCCGTTACAGTCCTGATGGTGGTAGGTTGGCAGTGGCACATGAATCTGGT
GTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76702:104..709+

>mRNA_M-pyrifera_M_contig76702.18079.1 ID=mRNA_M-pyrifera_M_contig76702.18079.1|Name=mRNA_M-pyrifera_M_contig76702.18079.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig76702:104..709+ (Macrocystis pyrifera P11B4 male)
ATGGGGAGGGAGAAGCATGGGAAGACGTGTTTTTCTTGTGATATATCGCC
TGATGGGAGGTATACGGTATCGTGTGGAGGGGATGGTAGTGTGATGCTGT
GGGATGGGGATGGTGGGAAGGTTGGGGAGGTGAGGAATCCAGATGGAAAG
CAGCTGTACCTTGTTCGTTTCTCTCCTGATGGTCGTCATGTGCTATGTGG
TGGTATTGGAGCTTGGGAATCTCCAGTGATTCTGTCAGTGCCTGATTTGA
GGGTGGTGGGAGAGTGTGGTGGAGGGAGTGGGGATGTGTATGGTGGTGCT
TGGATGCCTGATGGTGAGACATTTGTTGCTGGTGGTGGTGATGATGGTGT
GTTGCGTGTTTGGAGGAAGGAAGGTGGTGATGTGGTGTGTGAGAAGAGGG
TGGGGATGGGATCGGTGTGTAGTGTGGATGTGCATCCTGATGGGAGGGAG
TATGCAGTGGGTTTTCATGAAGGCAAGAAGGTAGTGATTTTCTCTGTGGA
GAGTCATGAGGAGTTGCGTCGTATTGACATTCCTGGCTATGTGCGCAGTG
CCCGTTACAGTCCTGATGGTGGTAGGTTGGCAGTGGCACATGAATCTGGT
GTGGTGATGGGGAGGGAGAAGCATGGGAAGACGTGTTTTTCTTGTGATAT
ATCGCCTGATGGGAGGTATACGGTATCGTGTGGAGGGGATGGTAGTGTGA
TGCTGTGGGATGGGGATGGTGGGAAGGTTGGGGAGGTGAGGAATCCAGAT
GGAAAGCAGCTGTACCTTGTTCGTTTCTCTCCTGATGGTCGTCATGTGCT
ATGTGGTGGTATTGGAGCTTGGGAATCTCCAGTGATTCTGTCAGTGCCTG
ATTTGAGGGTGGTGGGAGAGTGTGGTGGAGGGAGTGGGGATGTGTATGGT
GGTGCTTGGATGCCTGATGGTGAGACATTTGTTGCTGGTGGTGGTGATGA
TGGTGTGTTGCGTGTTTGGAGGAAGGAAGGTGGTGATGTGGTGTGTGAGA
AGAGGGTGGGGATGGGATCGGTGTGTAGTGTGGATGTGCATCCTGATGGG
AGGGAGTATGCAGTGGGTTTTCATGAAGGCAAGAAGGTAGTGATTTTCTC
TGTGGAGAGTCATGAGGAGTTGCGTCGTATTGACATTCCTGGCTATGTGC
GCAGTGCCCGTTACAGTCCTGATGGTGGTAGGTTGGCAGTGGCACATGAA
TCTGGTGTGGTG
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