mRNA_M-pyrifera_M_contig7665.18061.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7665.18061.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE) HSP 1 Score: 747 bits (1929), Expect = 5.150e-245 Identity = 591/1167 (50.64%), Postives = 662/1167 (56.73%), Query Frame = 1 Query: 10 RMTAGKAACSCRETSCFCRFKGXXXXXXXXXXXXXXXXXXXXXYLNLRHLRAVPLPPP--LARSELDPRDLALVAEINRMSRGARDRRGEKEKTGGXXXXXXXXXXXXXXXXXXXXXXXXXAAELGGEWAVHPDCALEFSERFVRRDIALAGRVQAVRLLNCSTNAIFGVVVRCGGFRALYGWLGDVWERVRAHKMPRAGPPEWKSVGGSVYVEELLCVLARVPISVDMLRETEITRVAKKFRRLAERHALESMISASNRLRAHLHAVVSRGVQEGHFFRNRLSHXXXXXXXXXQGFP---------TSLPSPSRRLEPWTLKEAVSWRTSG-------------------------GDGXXXXXXXSTLVGEDVGAVGGSIHHQTRHRQQYXXXXXQHPFFFMRQMKRGHPSPGLRSARLRGWRRGQGVSAADGDXXXXXXXXXSRAGGSDAGSARGEDDTRPWEDGKGRGNAFDDVRAPGQQASRRDAEEGLRGV-------RERRPSEERDGDGXXXXXXXXXGSVPSVGADSVGFSSEASSISAR-SSQRSAQAAGXXXXXXXXXXXXXXXXXXXXXXXXSGRGRSYARRSSWRRRVSRREPWVLDVSYSGGEEERRARSLEFSSSQVGTPYARGEGGLLRGGAGEEGW--LHWQGGEGVGXXXXXXXXXXXXXMMFRAFQREDKG-LPDGKFPPDGLDSEDGSWEGSVDWWPRPQSPPPGSVADAYYPPTEHDSGI---SSAG-QGATSLLPSVPTFEESGTRVSWADYRGHRLAEVHEIEPGYSREDFALPGRVGFITETCRRDMSKKEEQLLSPEDHERLAAAALKSEVLRGRVYGXXXXXXXDSEGTISDSENSTTGDPDAEYDNNSSXXXXXXXXXXXXXXXXXDRGGDGGVSA--VLPHSSASSGGSQDGDDVS--------DRGRVTGGANARHSIGGGEEMSRPQSDLPRTSLRN--------SXXXXXXXXXXXXXXXXXXXXXIPLKLDREDDGGSESGCSSIHSPRRSFSPMEDDTSPVGSQCVVKSP-RRFTSPSGRRSPPGSPSVSSPGSSRSGSVADGHVMFEGG-SSDR--RDAVCSPPLAHNSWAHHHQRSQLGVDVREPVSIHWGKSASNARGEPRWNT-REREERGVARRAGGSGSTGRGRILSG 3288 RMTAGKAACSCRETSCF RF+ N VPLPPP LARSELDPRDLALVAEIN M++G+RDRRG G AA AVHPDCA EF+ERFVRRDIALAGRVQAVRLL STN+IF VVVRCGGFRALYGWLGDVWERVRAHK+ RAGPP+WK VGG +YVE LLCVLARVPISVDMLRETEI RVAKKFRRLAERH LESM ASN+LRAHLHAVVSRGVQEG FFRNR S +G P S+P P RR EPW KE SWR +G G G XXXXXXS + D GG + H PF M R PGLRS +L+GWR QG GD SR DAGS RGEDD R ++GK R + A G EG RG + + E+ G+ + A ++G S E SS+ AR S RSA AG SG + + RRSSWRR S+ EPWVLD+S SG E+E+R + + +S P G GG +G +G+EG W GGE MFR RE+ G D + P SEDGSWEG+ DWWPRP+SPPP AD YY ++DSG+ S G QGA+SLLP+VPTFEESGTRVSWAD+RGH LAEVHEIEPGYSR DFALPG VGFITE CRRDMSKKEEQLLS EDHERLAAAAL+S+VLRGR YG DSEGTISDSENSTTGD D Y +NS XXXXXXXXXXXXXXXXX +LP+S DGDD S D R G A A+ E S Q + PRTSL+N S XXXXXXXXXXXXXXXXX CSSIHSP+R FSPME SP+G+Q +P RRFTSPSGRRSPP SPSVSSPGSSRSGSVADGHVMFE G SSD+ RD VC PPLAHN W HHH+ ++P W AS +R +PRW + R R G + AG GRG + G Sbjct: 246 RMTAGKAACSCRETSCFXRFRNTSASFASPRNR------------NQNPRTVVPLPPPGPLARSELDPRDLALVAEINCMAKGSRDRRGRG--AGDERGVVATPGDAPVGEGMGAAGAGVAAARTPERLAVHPDCAFEFAERFVRRDIALAGRVQAVRLLYFSTNSIFSVVVRCGGFRALYGWLGDVWERVRAHKLARAGPPQWKGVGGRLYVEGLLCVLARVPISVDMLRETEIARVAKKFRRLAERHGLESMTKASNQLRAHLHAVVSRGVQEGLFFRNRGSAAAAGPADYGRGGPLSQFQHPSGASMPYPVRRPEPWNSKEGESWRANGKVGGTVGFREYGGPTRGRAYAPGWRGGGRXXXXXXSGQLAGDPRGAGGGNDSMSNHFDPPL------PFSGMNLGNR----PGLRSVQLKGWRCRQG----GGDDTS------SRXXXXDAGSVRGEDDARASDEGK-RSASNHSGSADGSPTR-----EGARGELAGEGAGHQMKKGEKGQGEAQHGNGGNSRSNSNPAAAGALGGSPEPSSVPARRSGNRSAPGAGRAVVGT------------------SGGRKGHPRRSSWRR-ASKTEPWVLDLSNSGREDEQRRAARKHNS-----PQRAGYGGSRQGKSGDEGVGSSRWHGGE---------------NRMFRPLYREEAGRFSDFRHHPSNA-SEDGSWEGTGDWWPRPRSPPPAGAADTYYASGDYDSGMYMNSFPGPQGASSLLPAVPTFEESGTRVSWADHRGHNLAEVHEIEPGYSRGDFALPGHVGFITEACRRDMSKKEEQLLSLEDHERLAAAALESDVLRGRGYGSGAGG--DSEGTISDSENSTTGDLDGGYQSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPNSXXXXXXXXDGDDASETAVARSEDDKRKEGDARAK-------ERSSLQQNGPRTSLKNNSGAPNNLSDSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSIHSPQRCFSPMEGG-SPLGAQSSAMAPQRRFTSPSGRRSPPRSPSVSSPGSSRSGSVADGHVMFESGESSDQSHRDTVCRPPLAHNPWGHHHEHQH-----KQP----WELDASGSREKPRWESGRGRINGGGSHAAGDPARRGRGGRIEG 1313
BLAST of mRNA_M-pyrifera_M_contig7665.18061.1 vs. uniprot
Match: D8LTI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI8_ECTSI) HSP 1 Score: 355 bits (912), Expect = 1.090e-105 Identity = 285/502 (56.77%), Postives = 318/502 (63.35%), Query Frame = 1 Query: 1909 MFRAFQREDKG-LPDGKFPPDGLDSEDGSWEGSVDWWPRPQSPPPGSVADAYYPPTEHDSGI---SSAG-QGATSLLPSVPTFEESGTRVSWADYRGHRLAEVHEIEPGYSREDFALPGRVGFITETCRRDMSKKEEQLLSPEDHERLAAAALKSEVLRGRVYGXXXXXXXDSEGTISDSENSTTGDPDAEYDNNSSXXXXXXXXXXXXXXXXXDRGGDGGVSAVLPH-----------------SSASSGGSQDGDDVSDRGRVTGGANARHSIGGGEEMSRPQSDLPRTSLRN--------SXXXXXXXXXXXXXXXXXXXXXIPLKLDREDDGGSESGCSSIHSPRRSFSPMEDDTSPVGSQCVVKSP-RRFTSPSGRRSPPGSPSVSSPGSSRSGSVADGHVMFEGG-SSDRR--DAVCSPPLAHNSWAHHHQRSQLGVDVREPVSIHWGKSASNARGEPRWNT-REREERGVARRAGGSGSTGRGRILSG-EGRDRG 3306 MFR RE+ G L D + P SEDGSWEG+ DWWPRP+SPPP AD YY ++DSG+ S G QGA+SLLP+VPTFEESGTRVSWAD+RGH LAEVHEIEPGYSR DFALPG VGFITE CRRDMSKKEEQLLS EDHERLAAAAL+S+VLRGR YG DSEGTISDSENSTTGD D Y +NS XXXXXXXXXXXXXXXXX S + GS+DG R G A A+ E S PQ + PRTSL+N S XXXXXXXXXXXXXXXXX CSSIHSP+R FSPMED +SP+G+Q +P RRFTSPSGRRSPP SPSVSSPGSSRSGSVADGHVMFE G SSD+ D VC PPLAHN W +HH+ ++P W AS +R +PRW + R R G + AG GRG + G GR RG Sbjct: 1 MFRPLYREEAGRLSDFRHHPSNA-SEDGSWEGTGDWWPRPRSPPPAGAADTYYASGDYDSGMYMNSFPGPQGASSLLPAVPTFEESGTRVSWADHRGHNLAEVHEIEPGYSRGDFALPGHVGFITEACRRDMSKKEEQLLSLEDHERLAAAALESDVLRGRGYGSGAGG--DSEGTISDSENSTTGDLDGGYQSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDASETAXAGSEDGK------RKEGDARAK-------ERSNPQQNGPRTSLKNNSGAPNNLSDSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSIHSPQRCFSPMED-SSPLGAQSSTMAPQRRFTSPSGRRSPPRSPSVSSPGSSRSGSVADGHVMFESGESSDQSHGDTVCRPPLAHNPWGNHHEHQH-----QQP----WELDASGSREKPRWESGRGRINGGGSHAAGDPARRGRGGRVEGLRGRGRG 476 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7665.18061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7665.18061.1 >prot_M-pyrifera_M_contig7665.18061.1 ID=prot_M-pyrifera_M_contig7665.18061.1|Name=mRNA_M-pyrifera_M_contig7665.18061.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1132bp MTAGKAACSCRETSCFCRFKGSGSGSDPRNQQQQQQQQQQQQYLNLRHLRback to top mRNA from alignment at M-pyrifera_M_contig7665:142..8865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7665.18061.1 ID=mRNA_M-pyrifera_M_contig7665.18061.1|Name=mRNA_M-pyrifera_M_contig7665.18061.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8724bp|location=Sequence derived from alignment at M-pyrifera_M_contig7665:142..8865+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7665:142..8865+ >mRNA_M-pyrifera_M_contig7665.18061.1 ID=mRNA_M-pyrifera_M_contig7665.18061.1|Name=mRNA_M-pyrifera_M_contig7665.18061.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=6792bp|location=Sequence derived from alignment at M-pyrifera_M_contig7665:142..8865+ (Macrocystis pyrifera P11B4 male)back to top |