mRNA_M-pyrifera_M_contig76564.18044.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76564.18044.1
Unique NamemRNA_M-pyrifera_M_contig76564.18044.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A2T7PAA9_POMCA (Proline iminopeptidase n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAA9_POMCA)

HSP 1 Score: 109 bits (273), Expect = 8.400e-27
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   25 RSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            R LYP  EP+  G L+V     HKLSY  YG+    A  AVFLHGGPGAG  P   RFF+P+ ++ ++FDQRG+GKS P GE++ NTTWDLVEDIEK
Sbjct:    9 RDLYPESEPYDSGWLQVSDI--HKLSYQQYGNSKGKA--AVFLHGGPGAGVGPCDHRFFDPEVYRVILFDQRGAGKSTPAGELKENTTWDLVEDIEK 101          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: UPI0017A29BD1 (Prolyl aminopeptidase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI0017A29BD1)

HSP 1 Score: 105 bits (261), Expect = 4.520e-25
Identity = 56/98 (57.14%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   22 RRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNP-KFKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            RR+LYPA+EP+  GML+V    GH+L + + G+        VFLHGGPG G+SP   R FNP K+K +VFDQRG GKS P   + NNTTWDLVEDIEK
Sbjct:    5 RRTLYPAIEPYETGMLDVGD--GHRLYWELSGNPGGKP--VVFLHGGPGGGSSPDHRRQFNPDKYKVLVFDQRGCGKSTPYASLDNNTTWDLVEDIEK 98          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: B4VVW0_9CYAN (Prolyl aminopeptidase n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VVW0_9CYAN)

HSP 1 Score: 99.4 bits (246), Expect = 8.110e-25
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   25 RSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNP-KFKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            R LYP +EP+ QGML+V     H++SY   G+   +    V LHGGPG G+ P   ++FNP +++ VVFDQRGSGKS P+ E++ NTTWDLV DIEK
Sbjct:    2 RELYPPIEPYNQGMLQVSNL--HRISYEESGNP--EGKPIVVLHGGPGGGSQPFYRQYFNPNQWRIVVFDQRGSGKSTPHAELQENTTWDLVSDIEK 94          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A6G7ZR53_9SPHN (Proline iminopeptidase n=2 Tax=Sphingomonas sinipercae TaxID=2714944 RepID=A0A6G7ZR53_9SPHN)

HSP 1 Score: 103 bits (258), Expect = 1.260e-24
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   22 RRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNP-KFKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            RR LYP  EP+  GML+V    GH L + + G+   D    VFLHGGPG G+SP+  R FNP K+K +VFDQRG GKS+P   + NNTTWDL++DIEK
Sbjct:    6 RRGLYPEFEPYETGMLDVGD--GHSLYWELSGNP--DGKPVVFLHGGPGGGSSPSHRRQFNPGKYKILVFDQRGCGKSKPFASLENNTTWDLIDDIEK 99          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A520N6V1_9GAMM (Proline iminopeptidase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A520N6V1_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 1.740e-24
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   28 SLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            SLYP +EP+  G +EVD    HK+ Y   G+ +     AVFLHGGPG G S +  +FFNPK ++ ++FDQRG G+SEP+G + NNTTWDLV+DIEK
Sbjct:    6 SLYPHIEPYNHGFIEVDE---HKIYYEECGNPNGKP--AVFLHGGPGGGGSTSVRKFFNPKSYRIIIFDQRGCGRSEPHGCLTNNTTWDLVDDIEK 96          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A1Q4FR68_9GAMM (Proline iminopeptidase n=1 Tax=Xanthomonadales bacterium 63-13 TaxID=1895867 RepID=A0A1Q4FR68_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 1.740e-24
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 VLQEGDGRRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            ++ E  GRR LYP +EP   G+L+V A   H+L Y   G+  A     VFLHGGPGAG +P + RFF+P  ++ ++FDQRG G+S P+ E+ +NTTWDLV DIE+
Sbjct:    1 MITEPSGRRGLYPEIEPFDSGILQVSAL--HRLHYEQCGN--AKGKPVVFLHGGPGAGCNPTTRRFFDPAHYRIILFDQRGCGRSTPHAELTDNTTWDLVADIER 101          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A317I875_9PROT (Proline iminopeptidase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317I875_9PROT)

HSP 1 Score: 102 bits (254), Expect = 5.320e-24
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   10 EGDGRRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            +G  RR LYP+++P+  GML+V    GH + + + G+   D   AVFLHGGPGAG SPA  R F+PK +KA++FDQRG G+S P+  + +NTTW LV DIE+
Sbjct:   10 DGTTRRGLYPSIDPYASGMLDVGD--GHSVYWELSGNP--DGKPAVFLHGGPGAGCSPAHRRLFDPKRYKAMLFDQRGCGRSRPHANLDHNTTWHLVADIER 107          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: UPI0012D30745 (prolyl aminopeptidase n=1 Tax=Sphingomonas segetis TaxID=1104779 RepID=UPI0012D30745)

HSP 1 Score: 102 bits (253), Expect = 6.890e-24
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   22 RRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNP-KFKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            RR+LYP ++P+  GMLEV    GH L + + G+   D    VFLHGGPG G+SP   R FNP K+K +VFDQRG GKS P   + +NTTWDLVEDIEK
Sbjct:    8 RRTLYPEIKPYQTGMLEVGN--GHSLYWELSGNP--DGKPVVFLHGGPGGGSSPDHRRQFNPDKYKILVFDQRGCGKSTPYASLDHNTTWDLVEDIEK 101          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A522R413_9GAMM (Proline iminopeptidase (Fragment) n=1 Tax=Rhodanobacteraceae bacterium TaxID=2052182 RepID=A0A522R413_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 8.980e-24
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   22 RRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            RR LYP +EP   GML V A   H L Y   G+       AVFLHGGPGAG +    RFF+PK ++ V+FDQRG G+S P+ E+R NTTWDLV DIE+
Sbjct:    5 RRGLYPEIEPFDSGMLPVSAL--HTLYYEQCGNPHGKP--AVFLHGGPGAGCNAKCRRFFDPKVYRIVLFDQRGCGRSTPHAELRENTTWDLVADIER 98          
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Match: A0A1W0WFW0_HYPDU (Proline iminopeptidase n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WFW0_HYPDU)

HSP 1 Score: 101 bits (252), Expect = 1.040e-23
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   13 GDGRRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVFLHGGPGAGASPASARFFNPK-FKAVVFDQRGSGKSEPNGEMRNNTTWDLVEDIEK 312
            GD  R LYPA+EP+  G L+V     H+L Y   G+   +    V+LHGGPG G SP   R+F+PK ++ V+FDQRGSG S+P+ E+ +NTTW+LVEDIEK
Sbjct:    9 GDFSRELYPAIEPYQTGYLKVSDL--HELYYEQSGNPEGNP--VVYLHGGPGGGTSPRDRRYFDPKVYRIVIFDQRGSGHSKPSAELEHNTTWELVEDIEK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76564.18044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T7PAA9_POMCA8.400e-2757.73Proline iminopeptidase n=2 Tax=Pomacea canaliculat... [more]
UPI0017A29BD14.520e-2557.14Prolyl aminopeptidase n=1 Tax=Sphingomonas sp. Tax... [more]
B4VVW0_9CYAN8.110e-2552.58Prolyl aminopeptidase n=1 Tax=Coleofasciculus chth... [more]
A0A6G7ZR53_9SPHN1.260e-2455.10Proline iminopeptidase n=2 Tax=Sphingomonas sinipe... [more]
A0A520N6V1_9GAMM1.740e-2454.17Proline iminopeptidase n=2 Tax=Gammaproteobacteria... [more]
A0A1Q4FR68_9GAMM1.740e-2449.52Proline iminopeptidase n=1 Tax=Xanthomonadales bac... [more]
A0A317I875_9PROT5.320e-2450.98Proline iminopeptidase n=1 Tax=Proteobacteria bact... [more]
UPI0012D307456.890e-2456.12prolyl aminopeptidase n=1 Tax=Sphingomonas segetis... [more]
A0A522R413_9GAMM8.980e-2454.08Proline iminopeptidase (Fragment) n=1 Tax=Rhodanob... [more]
A0A1W0WFW0_HYPDU1.040e-2351.49Proline iminopeptidase n=1 Tax=Hypsibius dujardini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76564contigM-pyrifera_M_contig76564:486..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.4
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog3711.Bra013127.1-P
KEGG koko:K01259
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Proline iminopeptidase
EggNOG OGs2QPPY@2759,37K34@33090,3G9K0@35493,3HXMA@3699,COG0596@1
EC3.4.11.5
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.7717612-CDS-M-pyrifera_M_contig76564:485..8001622816664.7717612-CDS-M-pyrifera_M_contig76564:485..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76564 486..800 +
1692278106.5512319-CDS-M-pyrifera_M_contig76564:485..8001692278106.5512319-CDS-M-pyrifera_M_contig76564:485..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76564 486..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76564.18044.1prot_M-pyrifera_M_contig76564.18044.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76564 486..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76564.18044.1

>prot_M-pyrifera_M_contig76564.18044.1 ID=prot_M-pyrifera_M_contig76564.18044.1|Name=mRNA_M-pyrifera_M_contig76564.18044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
VLQEGDGRRSLYPALEPHTQGMLEVDATVGHKLSYAVYGSDSADAPAAVF
LHGGPGAGASPASARFFNPKFKAVVFDQRGSGKSEPNGEMRNNTTWDLVE
DIEK*
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mRNA from alignment at M-pyrifera_M_contig76564:486..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76564.18044.1 ID=mRNA_M-pyrifera_M_contig76564.18044.1|Name=mRNA_M-pyrifera_M_contig76564.18044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig76564:486..800+ (Macrocystis pyrifera P11B4 male)
GTGCTACAGGAAGGAGATGGACGCCGCTCTTTGTACCCTGCATTGGAGCC GCACACGCAAGGAATGCTCGAGGTGGACGCGACTGTGGGCCACAAGCTCT CCTATGCCGTGTATGGCAGCGACAGCGCCGATGCCCCGGCTGCAGTGTTC CTCCACGGAGGCCCAGGGGCAGGCGCATCGCCAGCGTCCGCAAGATTCTT CAACCCAAAGTTCAAAGCCGTGGTGTTTGACCAGCGAGGCTCCGGAAAGT CGGAACCAAACGGTGAAATGCGCAACAACACCACGTGGGACCTCGTAGAG GACATTGAGAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76564:486..800+

>mRNA_M-pyrifera_M_contig76564.18044.1 ID=mRNA_M-pyrifera_M_contig76564.18044.1|Name=mRNA_M-pyrifera_M_contig76564.18044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig76564:486..800+ (Macrocystis pyrifera P11B4 male)
GTGCTACAGGAAGGAGATGGACGCCGCTCTTTGTACCCTGCATTGGAGCC
GCACACGCAAGGAATGCTCGAGGTGGACGCGACTGTGGGCCACAAGCTCT
CCTATGCCGTGTATGGCAGCGACAGCGCCGATGCCCCGGCTGCAGTGTTC
CTCCACGGAGGCCCAGGGGCAGGCGCATCGCCAGCGTCCGCAAGATTCTT
CAACCCAAAGTTCAAAGCCGTGGTGTTTGACCAGCGAGGCTCCGGAAAGT
CGGAACCAAACGGTGAAATGCGCAACAACACCACGTGGGACCTCGTAGAG
GACATTGAGAAGTAAGTGCTACAGGAAGGAGATGGACGCCGCTCTTTGTA
CCCTGCATTGGAGCCGCACACGCAAGGAATGCTCGAGGTGGACGCGACTG
TGGGCCACAAGCTCTCCTATGCCGTGTATGGCAGCGACAGCGCCGATGCC
CCGGCTGCAGTGTTCCTCCACGGAGGCCCAGGGGCAGGCGCATCGCCAGC
GTCCGCAAGATTCTTCAACCCAAAGTTCAAAGCCGTGGTGTTTGACCAGC
GAGGCTCCGGAAAGTCGGAACCAAACGGTGAAATGCGCAACAACACCACG
TGGGACCTCGTAGAGGACATTGAGAAGTAA
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