mRNA_M-pyrifera_M_contig76559.18042.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76559.18042.1
Unique NamemRNA_M-pyrifera_M_contig76559.18042.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76559.18042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76559contigM-pyrifera_M_contig76559:3..644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size642
Cds size642
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.6995583-CDS-M-pyrifera_M_contig76559:2..6441622816664.6995583-CDS-M-pyrifera_M_contig76559:2..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76559 3..644 -
1692278106.5259433-CDS-M-pyrifera_M_contig76559:2..6441692278106.5259433-CDS-M-pyrifera_M_contig76559:2..644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76559 3..644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76559.18042.1prot_M-pyrifera_M_contig76559.18042.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76559 3..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76559.18042.1

>prot_M-pyrifera_M_contig76559.18042.1 ID=prot_M-pyrifera_M_contig76559.18042.1|Name=mRNA_M-pyrifera_M_contig76559.18042.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=214bp
MHGGIVALLALAALVGCGHVAWATPSNGWVLTFMVDDFTDNQLGLAGNSS
SYNSVNGTMVGGNRDQIFVYGLSKDTDEEHVSNGHWVGDGSGEGSFAMQY
DGADETETLDTKGLGSVDFTIDSGIAFELMIYVTWGSHVSAQVFTNGGSK
SCNITVELTDNINDSFPYYMPFSDMPSCDFTQVSALQVTYPFPIDMRTDY
VGVVRNGSIPTPTP
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mRNA from alignment at M-pyrifera_M_contig76559:3..644-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76559.18042.1 ID=mRNA_M-pyrifera_M_contig76559.18042.1|Name=mRNA_M-pyrifera_M_contig76559.18042.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig76559:3..644- (Macrocystis pyrifera P11B4 male)
ATGCATGGGGGGATTGTGGCTCTTCTGGCATTAGCAGCGCTTGTGGGATG
CGGCCACGTAGCTTGGGCAACACCCAGCAACGGCTGGGTGCTCACTTTCA
TGGTGGACGACTTCACAGATAACCAATTGGGACTGGCTGGGAACTCGAGC
TCCTATAACAGTGTGAACGGCACAATGGTGGGCGGCAACAGGGACCAGAT
CTTCGTGTACGGTCTCTCGAAGGACACCGATGAGGAGCACGTCAGCAATG
GCCACTGGGTCGGAGATGGGTCAGGAGAGGGATCTTTTGCAATGCAGTAC
GACGGAGCAGACGAGACAGAGACACTGGACACCAAAGGCCTCGGCAGCGT
CGATTTCACTATCGACAGCGGCATTGCGTTTGAACTCATGATCTATGTTA
CTTGGGGCTCTCATGTGTCTGCCCAAGTCTTCACCAACGGTGGCTCCAAG
AGCTGCAACATAACAGTGGAACTGACGGATAACATCAACGATAGTTTCCC
TTACTACATGCCGTTCTCAGATATGCCTTCCTGTGACTTCACACAGGTGA
GCGCCCTGCAGGTTACGTATCCGTTTCCAATTGACATGCGCACTGATTAC
GTTGGGGTGGTCCGCAATGGCTCAATCCCAACACCAACGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76559:3..644-

>mRNA_M-pyrifera_M_contig76559.18042.1 ID=mRNA_M-pyrifera_M_contig76559.18042.1|Name=mRNA_M-pyrifera_M_contig76559.18042.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1284bp|location=Sequence derived from alignment at M-pyrifera_M_contig76559:3..644- (Macrocystis pyrifera P11B4 male)
ATGCATGGGGGGATTGTGGCTCTTCTGGCATTAGCAGCGCTTGTGGGATG
CGGCCACGTAGCTTGGGCAACACCCAGCAACGGCTGGGTGCTCACTTTCA
TGGTGGACGACTTCACAGATAACCAATTGGGACTGGCTGGGAACTCGAGC
TCCTATAACAGTGTGAACGGCACAATGGTGGGCGGCAACAGGGACCAGAT
CTTCGTGTACGGTCTCTCGAAGGACACCGATGAGGAGCACGTCAGCAATG
GCCACTGGGTCGGAGATGGGTCAGGAGAGGGATCTTTTGCAATGCAGTAC
GACGGAGCAGACGAGACAGAGACACTGGACACCAAAGGCCTCGGCAGCGT
CGATTTCACTATCGACAGCGGCATTGCGTTTGAACTCATGATCTATGTTA
CTTGGGGCTCTCATGTGTCTGCCCAAGTCTTCACCAACGGTGGCTCCAAG
AGCTGCAACATAACAGTGGAACTGACGGATAACATCAACGATAGTTTCCC
TTACTACATGCCGTTCTCAGATATGCCTTCCTGTGACTTCACACAGGTGA
GCGCCCTGCAGGTTACGTATCCGTTTCCAATTGACATGCGCACTGATTAC
GTTGGGGTGGTCCGCAATGGCTCAATCCCAACACCAACGCCAATGCATGG
GGGGATTGTGGCTCTTCTGGCATTAGCAGCGCTTGTGGGATGCGGCCACG
TAGCTTGGGCAACACCCAGCAACGGCTGGGTGCTCACTTTCATGGTGGAC
GACTTCACAGATAACCAATTGGGACTGGCTGGGAACTCGAGCTCCTATAA
CAGTGTGAACGGCACAATGGTGGGCGGCAACAGGGACCAGATCTTCGTGT
ACGGTCTCTCGAAGGACACCGATGAGGAGCACGTCAGCAATGGCCACTGG
GTCGGAGATGGGTCAGGAGAGGGATCTTTTGCAATGCAGTACGACGGAGC
AGACGAGACAGAGACACTGGACACCAAAGGCCTCGGCAGCGTCGATTTCA
CTATCGACAGCGGCATTGCGTTTGAACTCATGATCTATGTTACTTGGGGC
TCTCATGTGTCTGCCCAAGTCTTCACCAACGGTGGCTCCAAGAGCTGCAA
CATAACAGTGGAACTGACGGATAACATCAACGATAGTTTCCCTTACTACA
TGCCGTTCTCAGATATGCCTTCCTGTGACTTCACACAGGTGAGCGCCCTG
CAGGTTACGTATCCGTTTCCAATTGACATGCGCACTGATTACGTTGGGGT
GGTCCGCAATGGCTCAATCCCAACACCAACGCCA
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