mRNA_M-pyrifera_M_contig76517.18033.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76517.18033.1
Unique NamemRNA_M-pyrifera_M_contig76517.18033.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: H9WYE3_PINTA (Uncharacterized protein (Fragment) n=3 Tax=Pinus subgen. Pinus TaxID=139271 RepID=H9WYE3_PINTA)

HSP 1 Score: 88.2 bits (217), Expect = 3.320e-21
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYT 195
            P GL GWS+A    LGEEL+DVLL   RLAD CG+D+GEA  RK+  N +KYPV++CKGS+ KYT
Sbjct:    2 PKGLPGWSSAEKEHLGEELSDVLLYLVRLADICGVDLGEAALRKVKKNGLKYPVERCKGSSKKYT 66          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A1Y1I8E0_KLENI (dCTP pyrophosphatase 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8E0_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 8.350e-20
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAY 201
            P GL GW+      LGEELADVLL   RLAD CG+D+G A  RKL  NA KYPVD C+GS+ KYTAY
Sbjct:   80 PRGLPGWTPPEREHLGEELADVLLYLVRLADVCGVDLGRAALRKLEKNAQKYPVDACRGSSQKYTAY 146          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A6P5GWJ2_ANACO (dCTP pyrophosphatase 1 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GWJ2_ANACO)

HSP 1 Score: 85.1 bits (209), Expect = 2.820e-19
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAYDT 207
            P GL GW       LGEEL+DVLL   RL+D CGID+G+A  RK+ LNA+KYPV++CKGS+ K+T Y +
Sbjct:   59 PKGLPGWGEEEKEHLGEELSDVLLYLVRLSDICGIDLGKAALRKMELNALKYPVNQCKGSSRKHTHYSS 127          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A1D1YHN3_9ARAE (dCTP pyrophosphatase 1 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YHN3_9ARAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.840e-19
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   10 LEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAYDTH 210
            L GW       LGEEL+DVLL   RL+D CG+D+G A +RKL LNA+KYPV +CKGS+ K+T Y+ +
Sbjct:    1 LPGWEEEEKEHLGEELSDVLLYLVRLSDMCGVDLGRAARRKLELNAVKYPVSRCKGSSKKHTHYNNN 67          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: D8SES3_SELML (dCTP pyrophosphatase 1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SES3_SELML)

HSP 1 Score: 83.6 bits (205), Expect = 6.830e-19
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    7 GLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTA 198
            GL  W+AA    LG+EL+DVLL  TRLAD CG+D+ +A  RKLA N  KYPVDKC+GS+ KYTA
Sbjct:   66 GLPDWTAAEKEHLGDELSDVLLYLTRLADVCGVDLSQAALRKLAKNDKKYPVDKCRGSSNKYTA 129          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A0G4J3L0_PLABS (dCTP pyrophosphatase 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J3L0_PLABS)

HSP 1 Score: 82.8 bits (203), Expect = 1.410e-18
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 GLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAY 201
            G+  ++      LGEELADVLL   RLADRC +D+ EA  RKLA NA KYPVDKCKGS  KYTAY
Sbjct:   58 GVPDFTEGEREHLGEELADVLLYLVRLADRCAVDLPEAALRKLAKNAAKYPVDKCKGSRQKYTAY 122          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A4S8INW3_MUSBA (dCTP pyrophosphatase 1 n=3 Tax=Musa TaxID=4640 RepID=A0A4S8INW3_MUSBA)

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-18
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAYDTHA 213
            P GL  W       LGEEL+DVLL   RL+D CG+D+G+A  RKL LNA+KYPV  CKGS+ K+T Y ++A
Sbjct:   71 PRGLPDWEEEEKQHLGEELSDVLLYLVRLSDICGVDLGKAALRKLELNALKYPVQLCKGSSRKHTRYSSNA 141          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A843VHU2_COLES (MazG domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VHU2_COLES)

HSP 1 Score: 85.9 bits (211), Expect = 7.010e-18
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAYDTHAGNA 222
            P GL GW       +GEEL+DVLL   +L+D CGID+G A  RK+ LNAIKYPV +CKGS+ K+T Y+T A  A
Sbjct:   85 PRGLPGWKEEEKEHVGEELSDVLLYLVQLSDICGIDLGRAALRKVELNAIKYPVSRCKGSSKKHTHYNTSASGA 158          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: C1N020_MICPC (Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N020_MICPC)

HSP 1 Score: 84.3 bits (207), Expect = 2.810e-17
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 GLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAY 201
            GL  WS     +L +ELADV L   RLADRCG+D+  AT+ K+A NA KYP D+C+GSAAKYTAY
Sbjct:  218 GLPSWSREDRARLEDELADVQLYLVRLADRCGVDLAAATRAKMAKNAAKYPADRCRGSAAKYTAY 282          
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Match: A0A7N0V2J9_KALFE (MazG domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V2J9_KALFE)

HSP 1 Score: 79.7 bits (195), Expect = 8.350e-17
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    7 GLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAIKYPVDKCKGSAAKYTAYDTHAGN 219
            GL  W  A    LGEEL+DVLL   RL+D CGID+GEA  RK+ +NA+KYPV+ C+GS+ K+T +     N
Sbjct:   97 GLPDWDEAEKQHLGEELSDVLLYLVRLSDICGIDLGEAALRKMEINALKYPVNICRGSSKKHTQHSDSTSN 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76517.18033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H9WYE3_PINTA3.320e-2161.54Uncharacterized protein (Fragment) n=3 Tax=Pinus s... [more]
A0A1Y1I8E0_KLENI8.350e-2062.69dCTP pyrophosphatase 1 n=1 Tax=Klebsormidium niten... [more]
A0A6P5GWJ2_ANACO2.820e-1956.52dCTP pyrophosphatase 1 n=3 Tax=Ananas comosus TaxI... [more]
A0A1D1YHN3_9ARAE2.840e-1955.22dCTP pyrophosphatase 1 (Fragment) n=1 Tax=Anthuriu... [more]
D8SES3_SELML6.830e-1962.50dCTP pyrophosphatase 1 n=1 Tax=Selaginella moellen... [more]
A0A0G4J3L0_PLABS1.410e-1863.08dCTP pyrophosphatase 1 n=1 Tax=Plasmodiophora bras... [more]
A0A4S8INW3_MUSBA2.300e-1854.93dCTP pyrophosphatase 1 n=3 Tax=Musa TaxID=4640 Rep... [more]
A0A843VHU2_COLES7.010e-1855.41MazG domain-containing protein (Fragment) n=1 Tax=... [more]
C1N020_MICPC2.810e-1760.00Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromon... [more]
A0A7N0V2J9_KALFE8.350e-1752.11MazG domain-containing protein n=2 Tax=Kalanchoe f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76517contigM-pyrifera_M_contig76517:780..1019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.2
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog77586.LPERR04G05420.1
KEGG rclassRC00002
KEGG koko:K16904
KEGG ReactionR01667,R01668
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MazG-like family
EggNOG OGs2S210@2759,37UWM@33090,3GIZ5@35493,3IGZ1@38820,3KZFT@4447,COG1694@1
EC3.6.1.12
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.3330176-CDS-M-pyrifera_M_contig76517:779..10191622816664.3330176-CDS-M-pyrifera_M_contig76517:779..1019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76517 780..1019 -
1692278106.3708682-CDS-M-pyrifera_M_contig76517:779..10191692278106.3708682-CDS-M-pyrifera_M_contig76517:779..1019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76517 780..1019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76517.18033.1prot_M-pyrifera_M_contig76517.18033.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76517 780..1019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76517.18033.1

>prot_M-pyrifera_M_contig76517.18033.1 ID=prot_M-pyrifera_M_contig76517.18033.1|Name=mRNA_M-pyrifera_M_contig76517.18033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
PVGLEGWSAARVTKLGEELADVLLLTTRLADRCGIDIGEATKRKLALNAI
KYPVDKCKGSAAKYTAYDTHAGNADARGQV
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mRNA from alignment at M-pyrifera_M_contig76517:780..1019-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76517.18033.1 ID=mRNA_M-pyrifera_M_contig76517.18033.1|Name=mRNA_M-pyrifera_M_contig76517.18033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig76517:780..1019- (Macrocystis pyrifera P11B4 male)
CCTGTGGGCTTGGAAGGTTGGAGTGCAGCGCGTGTGACGAAGCTGGGAGA GGAGCTGGCAGACGTGTTGTTGTTGACGACGCGATTGGCGGATCGGTGTG GGATCGACATTGGAGAAGCGACGAAACGGAAGCTGGCGCTGAATGCAATC AAGTACCCCGTGGACAAGTGCAAGGGGTCTGCCGCAAAGTACACGGCCTA CGACACCCACGCAGGCAACGCGGATGCGCGGGGACAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76517:780..1019-

>mRNA_M-pyrifera_M_contig76517.18033.1 ID=mRNA_M-pyrifera_M_contig76517.18033.1|Name=mRNA_M-pyrifera_M_contig76517.18033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig76517:780..1019- (Macrocystis pyrifera P11B4 male)
CCTGTGGGCTTGGAAGGTTGGAGTGCAGCGCGTGTGACGAAGCTGGGAGA
GGAGCTGGCAGACGTGTTGTTGTTGACGACGCGATTGGCGGATCGGTGTG
GGATCGACATTGGAGAAGCGACGAAACGGAAGCTGGCGCTGAATGCAATC
AAGTACCCCGTGGACAAGTGCAAGGGGTCTGCCGCAAAGTACACGGCCTA
CGACACCCACGCAGGCAACGCGGATGCGCGGGGACAAGTACCTGTGGGCT
TGGAAGGTTGGAGTGCAGCGCGTGTGACGAAGCTGGGAGAGGAGCTGGCA
GACGTGTTGTTGTTGACGACGCGATTGGCGGATCGGTGTGGGATCGACAT
TGGAGAAGCGACGAAACGGAAGCTGGCGCTGAATGCAATCAAGTACCCCG
TGGACAAGTGCAAGGGGTCTGCCGCAAAGTACACGGCCTACGACACCCAC
GCAGGCAACGCGGATGCGCGGGGACAAGTA
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