mRNA_M-pyrifera_M_contig76512.18031.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76512.18031.1
Unique NamemRNA_M-pyrifera_M_contig76512.18031.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A7S1XXI3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXI3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.490e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEP 249
            +  + E+  E+RD KAR+ L+   F+L +   +PAA  +V AFAR TGD+ SLSAVDLKVLALT QLE E NG+  +R EP
Sbjct:   75 IVTIEEVLGEIRDAKAREHLERLPFELGVRSVAPAALAKVAAFARKTGDFASLSAVDLKVLALTYQLEAEVNGDAHVRSEP 155          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: UPI001C1B82E3 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1B82E3)

HSP 1 Score: 79.3 bits (194), Expect = 7.020e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEP 249
            +Y +PE+  E+RD  +R  L+   F L++  PS  A R VV F++ TGD+ SLSAVDL+VLALT  LE+E NG + +++EP
Sbjct:   18 IYTIPEVISEIRDKHSRDFLNQISFDLQIKVPSDEALREVVNFSKKTGDFTSLSAVDLRVLALTYMLEVETNGTKRLKKEP 98          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A3Q2P362_FUNHE (NIN1 (RPN12) binding protein 1 homolog n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2P362_FUNHE)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-14
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEPQ 252
            +Y + E+  E+RD   R+ L    +QL   EP P   R V  F++ TGDYPSLSA D+KVLALT QLELE  G + ++ EPQ
Sbjct:   29 IYTLREVLDEIRDRATRRSLAFLPYQLTFKEPHPERIRTVTEFSKKTGDYPSLSATDIKVLALTYQLELEHVGSQHLKTEPQ 110          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A7R9QY21_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QY21_9ACAR)

HSP 1 Score: 80.1 bits (196), Expect = 1.410e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEPQPT 258
            +Y +PE+  E++D   R  L    ++L+  EPS    + V++FA+ TGDY  LSA DLKV+ALTL+LE E NG++ IR EPQ T
Sbjct:   30 MYTLPEVVHEIKDQNTRNRLQFIAYELKYREPSEEDIKAVISFAKKTGDYCQLSATDLKVIALTLRLEKEVNGDKHIRHEPQVT 113          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A7S4MP79_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MP79_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 1.570e-14
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    4 QLYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEP 249
            ++  V E+  E+RD K R  LDSG+ +++L  P P A +R V F + TGDY +LSAVD+KV+AL + +E+E+NG +F++E P
Sbjct:   29 EMSTVQEVIHEIRDRKTRNKLDSGVLEVKLRGPHPDALQRTVDFCKATGDYAALSAVDIKVIALAVTVEMEKNGMKFLKEIP 110          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A7L1NX03_RHICY (NOB1 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L1NX03_RHICY)

HSP 1 Score: 80.5 bits (197), Expect = 1.630e-14
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEPQ 252
            LY VPE+  E+RD +AR+ L +   +L L+ P P   R V  FA+ TGDYPSLSA DL+VLALT QL+ E +G   +R EPQ
Sbjct:   26 LYTVPEVLAEIRDRRARRRLAALPCELRLLRPRPDLLRLVTEFAKKTGDYPSLSAADLQVLALTCQLQAETDGPDCLRWEPQ 107          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A7L3B858_9AVES (NOB1 protein (Fragment) n=1 Tax=Syrrhaptes paradoxus TaxID=302527 RepID=A0A7L3B858_9AVES)

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-14
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 QLYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEPQ 252
            QLY VPE+  E+RD  AR+ L +   +L L  P PA  R+V  F++ TGDYPSLSA DL+VLALT QL+ E  G   +R EPQ
Sbjct:   35 QLYTVPEVLAEIRDRPARRRLAALPCELHLRRPPPALLRQVTEFSKKTGDYPSLSAADLQVLALTCQLQTEIEGPDSLRWEPQ 117          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A1Y2GRX1_9FUNG (20S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GRX1_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 2.600e-14
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   10 YAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEP 249
            Y +PE+  E+RD +AR  L    F +E+I PS A+ R V AF+R TGDY  LSA DL+VLALT QLE+E  G + IR EP
Sbjct:   61 YTIPEVLNEIRDRQARNDLAMLPFDIEVINPSEASVRAVAAFSRKTGDYAVLSATDLRVLALTYQLEVENCGMKRIRTEP 140          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A8J4Q432_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q432_9MYCE)

HSP 1 Score: 80.1 bits (196), Expect = 2.730e-14
Identity = 38/85 (44.71%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    4 QLYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEPQPT 258
            +L+ +PE+ +EV D ++++ LD   F+++  +PSP +   V  F+R TGDYPSLS VD+K++ALT  LE E+NG   I+ +P PT
Sbjct:  104 ELWTIPEVLEEVIDSRSKEFLDHFPFEIKTRQPSPQSVAAVTEFSRLTGDYPSLSVVDIKIIALTYTLEAEKNGIDNIKTKPAPT 188          
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Match: A0A2N0SJT9_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0SJT9_9GLOM)

HSP 1 Score: 79.3 bits (194), Expect = 3.180e-14
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 LYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTGDYPSLSAVDLKVLALTLQLELEENGERFIREEP 249
            +Y +PE+  E+RD  +R  L+   F L++  PS  A R VV F++ TGD+ SLSAVDL+VLALT  LE+E NG + +++EP
Sbjct:   69 IYTIPEVISEIRDKHSRDFLNQISFDLQIKVPSDEALREVVNFSKKTGDFASLSAVDLRVLALTYMLEVETNGTKRLKKEP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76512.18031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XXI3_9STRA9.490e-1653.09Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
UPI001C1B82E37.020e-1548.15Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
A0A3Q2P362_FUNHE1.130e-1448.78NIN1 (RPN12) binding protein 1 homolog n=1 Tax=Fun... [more]
A0A7R9QY21_9ACAR1.410e-1447.62Hypothetical protein (Fragment) n=1 Tax=Oppiella n... [more]
A0A7S4MP79_9EUKA1.570e-1446.34Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7L1NX03_RHICY1.630e-1452.44NOB1 protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
A0A7L3B858_9AVES2.300e-1453.01NOB1 protein (Fragment) n=1 Tax=Syrrhaptes paradox... [more]
A0A1Y2GRX1_9FUNG2.600e-1453.7520S-pre-rRNA D-site endonuclease NOB1 n=1 Tax=Lobo... [more]
A0A8J4Q432_9MYCE2.730e-1444.71Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A2N0SJT9_9GLOM3.180e-1448.15Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76512contigM-pyrifera_M_contig76512:174..902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.5
Seed ortholog evalue8.9e-13
Seed eggNOG ortholog32507.XP_006802364.1
Preferred nameNOB1
KEGG koko:K11883
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000469,GO:0003008,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0030490,GO:0030684,GO:0030688,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050877,GO:0050953,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.NIN1 RPN12 binding protein 1 homolog (S. cerevisiae)
EggNOG OGs38YUF@33154,3BCN3@33208,3CXZE@33213,483B0@7711,492ZB@7742,49VGA@7898,COG1439@1,KOG2463@2759
COG Functional cat.O
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03051
Exons2
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.2536776-CDS-M-pyrifera_M_contig76512:173..4261622816664.2536776-CDS-M-pyrifera_M_contig76512:173..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76512 174..426 +
1692278106.3266594-CDS-M-pyrifera_M_contig76512:173..4261692278106.3266594-CDS-M-pyrifera_M_contig76512:173..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76512 174..426 +
1622816664.26456-CDS-M-pyrifera_M_contig76512:618..9021622816664.26456-CDS-M-pyrifera_M_contig76512:618..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76512 619..902 +
1692278106.3409903-CDS-M-pyrifera_M_contig76512:618..9021692278106.3409903-CDS-M-pyrifera_M_contig76512:618..902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76512 619..902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76512.18031.1prot_M-pyrifera_M_contig76512.18031.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76512 174..902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76512.18031.1

>prot_M-pyrifera_M_contig76512.18031.1 ID=prot_M-pyrifera_M_contig76512.18031.1|Name=mRNA_M-pyrifera_M_contig76512.18031.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
MQLYAVPEIKQEVRDLKARQLLDSGLFQLELIEPSPAAFRRVVAFARTTG
DYPSLSAVDLKVLALTLQLELEENGERFIREEPQPTESESVEEIVKEKET
ESVVESQSVTEEETSVAELETSVATEGETESVESAVNEAETTEREATAEA
SAAEAEAKATADSEEDSDDEGEWVTPDNF
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mRNA from alignment at M-pyrifera_M_contig76512:174..902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76512.18031.1 ID=mRNA_M-pyrifera_M_contig76512.18031.1|Name=mRNA_M-pyrifera_M_contig76512.18031.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=729bp|location=Sequence derived from alignment at M-pyrifera_M_contig76512:174..902+ (Macrocystis pyrifera P11B4 male)
ATGCAGCTCTATGCGGTGCCTGAGATCAAGCAGGAGGTGCGTGACTTGAA GGCCAGACAGCTGCTGGACTCGGGCCTCTTCCAGCTGGAGCTGATCGAGC CCTCCCCCGCGGCCTTCAGGAGAGTGGTGGCGTTTGCGAGAACGACGGGC GACTACCCTTCACTCTCTGCTGTGGATCTGAAGGTTCTCGCACTCACTCT TCAGCTGGAGCTCGAGGAGAACGGCGAGAGATTCATCAGAGAGGAACCTC AGCGTCCGATTTTCTCGGATGATGCACCGAAGCTCCACAGCGCTCTTCCA AAGGCTGTGACAAAGGGAAAGGGAAGTGGAAAGCGTCAGAACAATGGAAA GGGAAAGGGAAACGGAAAGGGAAAGGGAAACGGAAACGGAAAGGGAAGCG AGGGAGCGAAGGGAAAGAAAGAGAGTGAGAGTGTGACTGAGAGAGCGACA GAGAGTGAGAGTGTGGAGGAGATAGTGAAGGAGAAAGAGACAGAGAGTGT GGTCGAGTCACAGTCTGTCACAGAGGAAGAGACTTCAGTCGCAGAGTTGG AGACCTCTGTGGCTACAGAGGGAGAGACAGAGAGCGTCGAGAGCGCAGTG AACGAAGCGGAGACGACAGAGAGGGAAGCGACAGCCGAGGCCTCCGCTGC TGAGGCAGAAGCCAAGGCTACCGCCGACAGTGAGGAAGACAGCGACGACG AAGGGGAGTGGGTCACTCCCGACAACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76512:174..902+

>mRNA_M-pyrifera_M_contig76512.18031.1 ID=mRNA_M-pyrifera_M_contig76512.18031.1|Name=mRNA_M-pyrifera_M_contig76512.18031.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig76512:174..902+ (Macrocystis pyrifera P11B4 male)
ATGCAGCTCTATGCGGTGCCTGAGATCAAGCAGGAGGTGCGTGACTTGAA
GGCCAGACAGCTGCTGGACTCGGGCCTCTTCCAGCTGGAGCTGATCGAGC
CCTCCCCCGCGGCCTTCAGGAGAGTGGTGGCGTTTGCGAGAACGACGGGC
GACTACCCTTCACTCTCTGCTGTGGATCTGAAGGTTCTCGCACTCACTCT
TCAGCTGGAGCTCGAGGAGAACGGCGAGAGATTCATCAGAGAGGAACCTC
AGCATGCAGCTCTATGCGGTGCCTGAGATCAAGCAGGAGGTGCGTGACTT
GAAGGCCAGACAGCTGCTGGACTCGGGCCTCTTCCAGCTGGAGCTGATCG
AGCCCTCCCCCGCGGCCTTCAGGAGAGTGGTGGCGTTTGCGAGAACGACG
GGCGACTACCCTTCACTCTCTGCTGTGGATCTGAAGGTTCTCGCACTCAC
TCTTCAGCTGGAGCTCGAGGAGAACGGCGAGAGATTCATCAGAGAGGAAC
CTCAGCCGACAGAGAGTGAGAGTGTGGAGGAGATAGTGAAGGAGAAAGAG
ACAGAGAGTGTGGTCGAGTCACAGTCTGTCACAGAGGAAGAGACTTCAGT
CGCAGAGTTGGAGACCTCTGTGGCTACAGAGGGAGAGACAGAGAGCGTCG
AGAGCGCAGTGAACGAAGCGGAGACGACAGAGAGGGAAGCGACAGCCGAG
GCCTCCGCTGCTGAGGCAGAAGCCAAGGCTACCGCCGACAGTGAGGAAGA
CAGCGACGACGAAGGGGAGTGGGTCACTCCCGACAACTTCCGACAGAGAG
TGAGAGTGTGGAGGAGATAGTGAAGGAGAAAGAGACAGAGAGTGTGGTCG
AGTCACAGTCTGTCACAGAGGAAGAGACTTCAGTCGCAGAGTTGGAGACC
TCTGTGGCTACAGAGGGAGAGACAGAGAGCGTCGAGAGCGCAGTGAACGA
AGCGGAGACGACAGAGAGGGAAGCGACAGCCGAGGCCTCCGCTGCTGAGG
CAGAAGCCAAGGCTACCGCCGACAGTGAGGAAGACAGCGACGACGAAGGG
GAGTGGGTCACTCCCGACAACTTC
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