mRNA_M-pyrifera_M_contig76487.18030.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76487.18030.1
Unique NamemRNA_M-pyrifera_M_contig76487.18030.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A8C8G0L8_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8G0L8_ONCTS)

HSP 1 Score: 61.6 bits (148), Expect = 3.000e-8
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  478 GAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIA 705
            G A LH AA +G +  +  L+   A ++ +S    G TPLM AAM G  AAV+LLL+ GADPLL++ QGL+A+  A
Sbjct:   30 GWAPLHYAASNGHVAVMGLLLENHAYIDAESPN--GSTPLMMAAMYGTPAAVKLLLEAGADPLLKNQQGLSANDFA 103
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A7C9TBM1_9PROT (Ankyrin repeat domain-containing protein n=1 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=A0A7C9TBM1_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 4.970e-8
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:  478 GAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASIIA 744
            G A LH AA HG L  +  L+   A ++  S    G TPLM A+  G  AAV+LLL  GADPLL++ QGLTA   A   + T  A +IA
Sbjct:  129 GWAPLHYAATHGHLAVLTLLLDNYAYIDAASPN--GTTPLMMASHYGTPAAVKLLLDAGADPLLKNIQGLTAIDFAYRANRTESAEMIA 215
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: UPI001CF64F27 (ankyrin repeat domain-containing protein n=1 Tax=Alcaligenes sp. 13f TaxID=2841924 RepID=UPI001CF64F27)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-7
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  475 LGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            +G + LH AA  G    +R L+S+ A VN  + +  G +PLM AA+SGKRA V +LL  GADP +++AQGL+    A + ++ ++AS +
Sbjct:   19 VGWSPLHYAASKGHEETVRYLLSQKAIVNAPAPD--GTSPLMMAALSGKRAVVDVLLAAGADPSMQNAQGLSPADWARSANHEQLASYL 105
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: UPI001A9FCBC1 (ankyrin repeat domain-containing protein n=1 Tax=Alcaligenes sp. SORT26 TaxID=2813780 RepID=UPI001A9FCBC1)

HSP 1 Score: 62.0 bits (149), Expect = 2.420e-7
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  475 LGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            +G + LH AA  G    +R L+S+ A VN  + +  G +PLM AA+SGKRA V +LL  GADP +++AQGL+    A + ++ ++AS +
Sbjct:  131 VGWSPLHYAASKGHEETVRYLLSQKAIVNAPAPD--GTSPLMMAALSGKRAVVEVLLAAGADPTMQNAQGLSPADWARSANHEQLASFL 217
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A411SW40_ALCFA (Ankyrin repeat domain-containing protein n=4 Tax=Alcaligenes TaxID=507 RepID=A0A411SW40_ALCFA)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-7
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  475 LGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            +G + LH AA  G    +R L+S+ A VN  + +  G +PLM AA+SGKRA V LLL  GADP +++AQGL+A   A + ++ ++A+ +
Sbjct:  131 VGWSPLHYAASKGHEDTVRYLLSQKAIVNAPAPD--GTSPLMMAALSGKRAVVDLLLAAGADPGMQNAQGLSAADWARSANHDQLAAYL 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A4Q7K833_METCM (Uncharacterized protein n=1 Tax=Pochonia chlamydosporia 123 TaxID=1052797 RepID=A0A4Q7K833_METCM)

HSP 1 Score: 62.8 bits (151), Expect = 3.280e-7
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  484 AALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            A LH+AA+ G   +I A++ +GA+VN + +E  GRTPL  AA  G    V+LLL+ GADP +ED   L A   AL   Y R+A +I
Sbjct:  676 AGLHLAAYFGLEKSIAAILGKGADVNLKDSE--GRTPLRQAAGLGHEVVVKLLLENGADPDIEDDNDLDATTAALMNGYGRLAVLI 759
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A2N2HKQ5_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 TaxID=2013746 RepID=A0A2N2HKQ5_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 4.830e-7
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:  490 LHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASIIAHHAHGHSSA 771
            LH AA++G+   I  L+SRGANVN  S      TPL  A+  G  AAV+ LL  GADP ++DA G TA   A    +T + +++      H+ A
Sbjct:   55 LHWAAYYGKADIITLLVSRGANVNASSPY---GTPLTLASQYGFTAAVKALLDAGADPSIKDASGQTAAGYAQQGGFTEIVALLGGAPSQHARA 145
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BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A3G6HKA2_ALCFA (Ankyrin repeat domain-containing protein n=26 Tax=Alcaligenes TaxID=507 RepID=A0A3G6HKA2_ALCFA)

HSP 1 Score: 60.5 bits (145), Expect = 8.010e-7
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  475 LGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            +G + LH AA  G    +R L+S+ A VN  + +  G +PLM AA+SGKRA V +LL  GADP +++AQGL+    A + ++ ++AS +
Sbjct:  131 VGWSPLHYAASKGHEETVRYLLSQKAIVNAPAPD--GTSPLMMAALSGKRAVVDVLLAAGADPSMQNAQGLSPADWARSANHEQLASYL 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: A0A8H9IGU7_9BURK (Uncharacterized protein n=2 Tax=Alcaligenes pakistanensis TaxID=1482717 RepID=A0A8H9IGU7_9BURK)

HSP 1 Score: 60.5 bits (145), Expect = 8.060e-7
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  475 LGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASII 741
            +G + LH AA  G    +R L+S+ A VN  + +  G +PLM AA+SGKRA V +LL  GADP +++AQGL+    A + ++ ++AS +
Sbjct:  132 VGWSPLHYAASKGHEETVRYLLSQKAIVNAPAPD--GTSPLMMAALSGKRAVVDVLLAAGADPSMQNAQGLSPADWARSANHEQLASYL 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Match: UPI001FB986E3 (ankyrin repeat domain-containing protein n=1 Tax=Aquabacterium sp. A08 TaxID=2718532 RepID=UPI001FB986E3)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-6
Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:  478 GAAALHVAAFH---GRLGAIRALISRGANVNQQSTELVGRTPLMFAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIA 705
            G A LH AA H     L   R L+ R A ++  S    G TPLM AA  G+ AAVRLLL+ GADPLL++ QGLTA   A
Sbjct:  110 GWAPLHYAASHVGPASLPITRLLLERHAYIDAASPN--GTTPLMMAARYGQAAAVRLLLEEGADPLLQNQQGLTAVDFA 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76487.18030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A8C8G0L8_ONCTS3.000e-847.37Uncharacterized protein n=1 Tax=Oncorhynchus tshaw... [more]
A0A7C9TBM1_9PROT4.970e-846.07Ankyrin repeat domain-containing protein n=1 Tax=S... [more]
UPI001CF64F272.380e-741.57ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI001A9FCBC12.420e-741.57ankyrin repeat domain-containing protein n=1 Tax=A... [more]
A0A411SW40_ALCFA2.430e-742.70Ankyrin repeat domain-containing protein n=4 Tax=A... [more]
A0A4Q7K833_METCM3.280e-745.35Uncharacterized protein n=1 Tax=Pochonia chlamydos... [more]
A0A2N2HKQ5_9DELT4.830e-740.43Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A3G6HKA2_ALCFA8.010e-741.57Ankyrin repeat domain-containing protein n=26 Tax=... [more]
A0A8H9IGU7_9BURK8.060e-741.57Uncharacterized protein n=2 Tax=Alcaligenes pakist... [more]
UPI001FB986E31.600e-650.63ankyrin repeat domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76487contigM-pyrifera_M_contig76487:10..1020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue6e-17
Seed eggNOG ortholog36331.EPrPI00000018364
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin, TRAF-type zinc finger protein. Source PGD
EggNOG OGs1MDNU@121069,COG0666@1,KOG0297@1,KOG0297@2759,KOG0504@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size930
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.2045228-CDS-M-pyrifera_M_contig76487:9..3651622816664.2045228-CDS-M-pyrifera_M_contig76487:9..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76487 10..365 -
1692278106.306976-CDS-M-pyrifera_M_contig76487:9..3651692278106.306976-CDS-M-pyrifera_M_contig76487:9..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76487 10..365 -
1622816664.2157037-CDS-M-pyrifera_M_contig76487:446..10201622816664.2157037-CDS-M-pyrifera_M_contig76487:446..1020Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76487 447..1020 -
1692278106.3173916-CDS-M-pyrifera_M_contig76487:446..10201692278106.3173916-CDS-M-pyrifera_M_contig76487:446..1020Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76487 447..1020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76487.18030.1prot_M-pyrifera_M_contig76487.18030.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76487 10..1020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76487.18030.1

>prot_M-pyrifera_M_contig76487.18030.1 ID=prot_M-pyrifera_M_contig76487.18030.1|Name=mRNA_M-pyrifera_M_contig76487.18030.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=310bp
PLYSTEAASLGYERLGHRSFLWSKGWSRSDPHTQCIVLALRETRDVALRR
FSAHAQVKHDRHRRRRAKRLQAVALRMEKAMDQFDSVASLACLQAGLPAQ
YEGKNGHTALTVASKTEAVVQAPDTASAHIRGRRMLALVVILESYTTLPR
DLLCHEPALGAAALHVAAFHGRLGAIRALISRGANVNQQSTELVGRTPLM
FAAMSGKRAAVRLLLQLGADPLLEDAQGLTADQIALAKDYTRVASIIAHH
AHGHSSADSGTEDVSREGLRTELCRWGCGARYFIGTQALHESACPRVPVP
CPLDCGEELW
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mRNA from alignment at M-pyrifera_M_contig76487:10..1020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76487.18030.1 ID=mRNA_M-pyrifera_M_contig76487.18030.1|Name=mRNA_M-pyrifera_M_contig76487.18030.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at M-pyrifera_M_contig76487:10..1020- (Macrocystis pyrifera P11B4 male)
CCTCTCTATTCCACCGAAGCAGCATCGTTGGGATATGAGCGGCTGGGTCA
TCGTTCCTTCTTGTGGAGCAAAGGATGGTCACGATCTGATCCTCACACCC
AATGCATTGTCCTTGCACTTCGTGAAACGCGTGATGTTGCACTTCGTCGC
TTCTCTGCCCATGCGCAAGTCAAACACGATCGGCATCGAAGGCGACGTGC
AAAGCGGCTTCAAGCTGTGGCCCTTCGCATGGAAAAGGCAATGGATCAAT
TTGATTCTGTTGCGTCATTGGCATGTCTGCAAGCTGGATTACCTGCACAA
TACGAAGGAAAGAATGGTCACACGGCACTCACAGTTGCTTCCAAAACGGA
AGCAGTTGTGCAGGCACCAGACACAGCATCTGCTCACATTCGAGGGAGGC
GGATGCTCGCATTGGTGGTGATTTTGGAGTCATACACAACCTTACCACGT
GATCTTCTTTGTCACGAACCTGCTTTGGGAGCTGCAGCTTTGCATGTAGC
TGCATTTCATGGCAGACTTGGCGCTATTCGTGCGCTGATTTCACGAGGTG
CCAATGTCAACCAGCAATCTACAGGTGGTGCGTTAGGGAGGATGGATGAG
TCACGTGCAGACGTTGTGGCAGAACAGCACTCTGAGTTTCTAGTACCTTG
GGAAGAACTCGTTGGCCGTACCCCGCTTATGTTCGCTGCAATGTCAGGCA
AACGTGCAGCAGTTCGTCTCTTGCTTCAACTTGGTGCAGATCCACTTCTC
GAAGACGCACAAGGGCTCACAGCTGATCAAATTGCACTTGCAAAAGACTA
CACCAGAGTAGCAAGTATCATTGCACACCATGCACATGGACACAGTTCTG
CAGATAGCGGCACCGAGGATGTATCTCGTGAAGGACTCCGGACAGAATTA
TGTCGTTGGGGTTGTGGTGCACGCTATTTCATTGGCACACAAGCTCTTCA
TGAATCTGCATGTCCACGAGTCCCAGTTCCATGTCCACTTGATTGTGGAG
AAGAGTTATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76487:10..1020-

>mRNA_M-pyrifera_M_contig76487.18030.1 ID=mRNA_M-pyrifera_M_contig76487.18030.1|Name=mRNA_M-pyrifera_M_contig76487.18030.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1860bp|location=Sequence derived from alignment at M-pyrifera_M_contig76487:10..1020- (Macrocystis pyrifera P11B4 male)
CCTCTCTATTCCACCGAAGCAGCATCGTTGGGATATGAGCGGCTGGGTCA
TCGTTCCTTCTTGTGGAGCAAAGGATGGTCACGATCTGATCCTCACACCC
AATGCATTGTCCTTGCACTTCGTGAAACGCGTGATGTTGCACTTCGTCGC
TTCTCTGCCCATGCGCAAGTCAAACACGATCGGCATCGAAGGCGACGTGC
AAAGCGGCTTCAAGCTGTGGCCCTTCGCATGGAAAAGGCAATGGATCAAT
TTGATTCTGTTGCGTCATTGGCATGTCTGCAAGCTGGATTACCTGCACAA
TACGAAGGAAAGAATGGTCACACGGCACTCACAGTTGCTTCCAAAACGGA
AGCAGTTGTGCAGGCACCAGACACAGCATCTGCTCACATTCGAGGGAGGC
GGATGCTCGCATTGGTGGTGATTTTGGAGTCATACACAACCTTACCACGT
GATCTTCTTTGTCACGAACCTGCTTTGGGAGCTGCAGCTTTGCATGTAGC
TGCATTTCATGGCAGACTTGGCGCTATTCGTGCGCTGATTTCACGAGGTG
CCAATGTCAACCAGCAATCTACAGCCTCTCTATTCCACCGAAGCAGCATC
GTTGGGATATGAGCGGCTGGGTCATCGTTCCTTCTTGTGGAGCAAAGGAT
GGTCACGATCTGATCCTCACACCCAATGCATTGTCCTTGCACTTCGTGAA
ACGCGTGATGTTGCACTTCGTCGCTTCTCTGCCCATGCGCAAGTCAAACA
CGATCGGCATCGAAGGCGACGTGCAAAGCGGCTTCAAGCTGTGGCCCTTC
GCATGGAAAAGGCAATGGATCAATTTGATTCTGTTGCGTCATTGGCATGT
CTGCAAGCTGGATTACCTGCACAATACGAAGGAAAGAATGGTCACACGGC
ACTCACAGTTGCTTCCAAAACGGAAGCAGTTGTGCAGGCACCAGACACAG
CATCTGCTCACATTCGAGGGAGGCGGATGCTCGCATTGGTGGTGATTTTG
GAGTCATACACAACCTTACCACGTGATCTTCTTTGTCACGAACCTGCTTT
GGGAGCTGCAGCTTTGCATGTAGCTGCATTTCATGGCAGACTTGGCGCTA
TTCGTGCGCTGATTTCACGAGGTGCCAATGTCAACCAGCAATCTACAGAA
CTCGTTGGCCGTACCCCGCTTATGTTCGCTGCAATGTCAGGCAAACGTGC
AGCAGTTCGTCTCTTGCTTCAACTTGGTGCAGATCCACTTCTCGAAGACG
CACAAGGGCTCACAGCTGATCAAATTGCACTTGCAAAAGACTACACCAGA
GTAGCAAGTATCATTGCACACCATGCACATGGACACAGTTCTGCAGATAG
CGGCACCGAGGATGTATCTCGTGAAGGACTCCGGACAGAATTATGTCGTT
GGGGTTGTGGTGCACGCTATTTCATTGGCACACAAGCTCTTCATGAATCT
GCATGTCCACGAGTCCCAGTTCCATGTCCACTTGATTGTGGAGAAGAGTT
ATGGAACTCGTTGGCCGTACCCCGCTTATGTTCGCTGCAATGTCAGGCAA
ACGTGCAGCAGTTCGTCTCTTGCTTCAACTTGGTGCAGATCCACTTCTCG
AAGACGCACAAGGGCTCACAGCTGATCAAATTGCACTTGCAAAAGACTAC
ACCAGAGTAGCAAGTATCATTGCACACCATGCACATGGACACAGTTCTGC
AGATAGCGGCACCGAGGATGTATCTCGTGAAGGACTCCGGACAGAATTAT
GTCGTTGGGGTTGTGGTGCACGCTATTTCATTGGCACACAAGCTCTTCAT
GAATCTGCATGTCCACGAGTCCCAGTTCCATGTCCACTTGATTGTGGAGA
AGAGTTATGG
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