mRNA_M-pyrifera_M_contig76435.18018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76435.18018.1
Unique NamemRNA_M-pyrifera_M_contig76435.18018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A7Y4WZH0_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A7Y4WZH0_9BACT)

HSP 1 Score: 133 bits (335), Expect = 3.910e-32
Identity = 85/223 (38.12%), Postives = 121/223 (54.26%), Query Frame = 1
Query:    1 SCVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSWTAD-GSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS--GVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSWTAD-GSTYLVYVTGYSTNTGEFVLT 657
            +CVT+L+T GGVWYT    NGA    STC G  +D+K+ VF+                      ++TA+ G+TY + VTG+   TG F L+ T+ +P   ND+C+ AI I     +   T  G+TTD++ T  C+T+LN+  GVWY     + S   +S CG + YDTK+ +F   C   +CVTG D         ++  + G TY + VTG+STNTG F LT
Sbjct:  296 TCVTTLNTAGGVWYTFV-GNGAPNTISTCTGTAYDSKIGVFSGSCGSLICVTGNDDACGLQSSVTFTANTGTTYYVLVTGFGSATGAFTLTRTSVLP---NDLCTGAITINCGQTITGSTACGATTDAVAT--CVTALNTAPGVWYRFV-GDASPVTLSLCGSS-YDTKIGVFTGTCTALTCVTGNDDFCGVQSQVTFNTNAGVTYYILVTGFSTNTGNFTLT 510          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A7Y2YCW7_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YCW7_9GAMM)

HSP 1 Score: 123 bits (308), Expect = 1.500e-28
Identity = 84/233 (36.05%), Postives = 121/233 (51.93%), Query Frame = 1
Query:    4 CVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXS--WTADGSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS-GVWYTITPAEGSETIVSTC-------GGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXX-----SW-TADGSTYLVYVTGYSTNTGEFVL 654
            C TS +T  GVWY+++   G+ ++ASTC+ A++DTKL+ F                          W ADG   L+ V G+   TGDFDL+VT  VP P NDVC +AI     G +V+G+T  +T D      C TS+ + G+WY +    G+    STC       GGA+YDTK++++   C+V+ C+ G D               W T  G+TY V V G+S++TG+F L
Sbjct:  623 CGTS-NTAPGVWYSVSAPAGSVIIASTCNQANYDTKLSAFNGECGDLECIAGNDDTAGCLFTTELLWAADGDEDLLLVHGFGTATGDFDLTVTCEVP-PENDVCEDAIGPLVAGDIVSGSTTLATLDEPPDIDCGTSVTAPGIWYEVL-GTGNTMTASTCNDGDPATGGANYDTKISVYCADCEVKECIGGQDDNFGAGCAGFTTKFDWPTQAGATYKVLVHGFSSSTGDFDL 852          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A3M1TYJ3_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1TYJ3_9BACT)

HSP 1 Score: 117 bits (292), Expect = 2.070e-26
Identity = 83/222 (37.39%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   31 GVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSW----TADGSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCIT-----SLNSGVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSW----TADGSTYLVYVTGYSTNTGEFVLT 657
            GVWYTI   NG  + ASTCD A++DTK+ V++                      S     +  G TY IYV G +   GDF LS++   P   NDVCS AI I+  G V+ G T  ST+  +  T C       SL  G+WY +T   G    +STCG A++DTK+ +F   CD   C  G D         S+    T  G TY VY++G++  TGEF LT
Sbjct:  574 GVWYTIV-GNGQIITASTCDQANYDTKINVYSGSCDTLNCVAGNNDNFNCSDGSSKVDFVSEAGKTYYIYVNGNNGQRGDFTLSISCNDPSD-NDVCSKAIPISC-GDVIMGNTEFSTSAGVPATDCEAGPFDDSLGPGIWYVLT-GTGENVTLSTCGEANFDTKIDVFTGSCDSLVCYAGNDDGNGCAGFTSFLNMPTVAGETYYVYLSGFAGATGEFTLT 791          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A356FES8_9BACT (Dockerin domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FES8_9BACT)

HSP 1 Score: 113 bits (283), Expect = 2.820e-26
Identity = 74/221 (33.48%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   13 SLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSWTAD-GSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAI--EIAATGGVVAGTTVGSTTDSLLTTTCITSLNSGVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSWTA-DGSTYLVYVTGYSTNTGEFVLTAN 663
            S  T  G+WY++T   G+ + AS C G+++DTK++VF+                      SW  + G+TYL+ V G+   +GDF L+V A + +  ND C  AI  ++A    VV G+TV   T    +  C  S   G+WY+     G       CG +DYDTK+++F+  C   SCV   D          W + DG+TY + V G+ST +G F+LT +
Sbjct:   36 SASTAPGLWYSVTGVGGS-MTASLC-GSNYDTKISVFSGACGGVTCVASNDDSCGLQSVASWVPEEGATYLVLVHGFGSSSGDFTLTVEAVLAMQDNDDCGGAIGLDLATGQAVVEGSTVTGATPDAESGDCGASTAPGIWYSAV-GNGGTMSAGLCG-SDYDTKISVFSGDCGALSCVASNDDSCGLQSVAGWDSEDGATYRILVHGFSTRSGNFILTVD 252          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: UPI002004AC5B (T9SS type A sorting domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI002004AC5B)

HSP 1 Score: 110 bits (276), Expect = 2.820e-24
Identity = 85/243 (34.98%), Postives = 119/243 (48.97%), Query Frame = 1
Query:    1 SCVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSWTAD-------GSTYLIYVTGYSDYT---GDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS--GVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXX-SWTAD---------GSTYLVYVTGYSTNTGEFVLTAN 663
            +C  +++   GVWY +    G  ++ASTC+G +FDT +AVF+                      +  ++       GSTY I+VT +S +T   G F LS+T A P P N  C +A+ I+  G    G+TVG   +     TC+TSLN+  G +Y +    GS+  V+TCG + YDTKL IF   C    CV G D          S+T           G+ Y +YVTGYS+N G FVL  N
Sbjct:  782 ACGPTINDMPGVWYKV-QGTGYSIIASTCEGTNFDTVIAVFSGDCGSISCYANDDDSCDGGVGSTLASEVEFETQLGSTYYIFVTPFSSFTSNPGPFTLSLTCAGPPPPNQACLDAVGISC-GQSTTGSTVGYEINDF--DTCVTSLNTAPGRFYKV-EGTGSDITVNTCGSS-YDTKLGIFRGDCAGLICVAGNDDAPSSAYCGGSFTTQSSVTFSSQAGTVYYIYVTGYSSNAGNFVLNVN 1018          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A6N6KCM4_9BACT (HYR domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6N6KCM4_9BACT)

HSP 1 Score: 106 bits (265), Expect = 9.090e-23
Identity = 80/237 (33.76%), Postives = 117/237 (49.37%), Query Frame = 1
Query:    1 SCVTSLDTTGGVWYTITPANGAEVVASTCD-GADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSWTAD-----GSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS--GVWYTITPAEGSETIVSTCG-GADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSWTAD-----GSTYLVYVTGYSTNTGEFVLTANVT 669
            +C T   + GGVWY      G ++  +TC+ G+++DTKL VF                         T +     G+ Y IYVTG+S  TG+F++S++   P    DVCS+A++I+  G VV G T  +T D  L   C T   S  G+WY  T   G +  V+TC  G++YDTKL +F   C   +C+TG D           T +     G+ Y +YVTGYS+ TG + ++   T
Sbjct:  260 NCGTGSTSAGGVWYHFA-GTGQDIEVTTCNAGSNYDTKLFVFTGSCGSLTCVTGNDDSSCGFSSVRSTVNFSSIPGTDYFIYVTGFSSATGNFEMSISCTTP---GDVCSDALDISC-GDVVTGNTSIATGDGSLPF-CGTGSTSAGGIWYHFT-GTGDDVEVTTCNAGSNYDTKLFVFTGSCGSLTCLTGNDDSSCGFSGLRSTVNFSSVPGTNYYIYVTGYSSATGNYEMSLTCT 489          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A7Y2VJ45_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2VJ45_9GAMM)

HSP 1 Score: 105 bits (262), Expect = 1.380e-22
Identity = 80/232 (34.48%), Postives = 113/232 (48.71%), Query Frame = 1
Query:    4 CVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXS---WTADGSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS-GVWYTITPAEGSETIVSTC-------GGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXS---W-TADGSTYLVYVTGYSTNTGEFVL 654
            C TS +T  GVWY++       V ASTC+ AD+DTKL+V+                       +   W   G    + V G+   TG+FDL+VT       ND+C NA     +G V+AGTT  +T D      C TS+ + GVWY +    G+    STC       GGA+YDTK++++   C+V+ C+TG D         +   W T +G TY V V G+ + TG+F L
Sbjct:  108 CGTS-NTAPGVWYSVNHLG--IVTASTCNQADYDTKLSVYGGTCDELECIAGNDDTAGCGGFTTELTWGGSGEDEKLLVHGFGSSTGNFDLTVTCE-DYAENDLCENASGPLVSGDVIAGTTTTATLDEPPDIDCGTSVTAPGVWYDVI-GTGTTMTASTCNDGDPGTGGANYDTKISVYCADCEVKECITGNDDTSGCSGFSTQLDWPTQEGRTYKVLVHGFGSATGDFDL 334          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: A0A848T2J5_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=A0A848T2J5_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 4.450e-17
Identity = 76/228 (33.33%), Postives = 109/228 (47.81%), Query Frame = 1
Query:    1 SCVTSLDTTGGVWYTITPANGAEVVASTCDG-ADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXSWTAD-GSTYLIYVTGYSDYTGDFDLSVTAAVPVPG---NDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNS-GVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSW----TADGSTYLVYVTGYSTNTGEFVL 654
            +C TS+ T  G+WYT+T  +G+ +   TC G  ++DTKL V++                      ++T+  G+ Y IYV+GYS+ +GDF L V+     P    ND C NAI I   G  ++G+T  +T       TC   + S GVWYT     G    VSTCG A +DT++++F   C   +CV G D         S     T  G+ Y + V G+    G F L
Sbjct:  959 TCGTSV-TGKGIWYTMTGIDGS-ITIKTCGGITNYDTKLHVYSGSCGSFTCVTGNDDNCNLQSSVTFTSILGTNYFIYVSGYSNNSGDFSLDVSCTYTSPPSEPNDSCMNAIAINC-GDTLSGSTANATISQ--GGTCGPPITSPGVWYTHN-GTGLNATVSTCGMASFDTRISVFTGTCGSLTCVGGNDDYNGCGTNTSQYTFGTNLGTQYYILVHGFQNAVGNFDL 1180          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: UPI001F48D85E (T9SS type A sorting domain-containing protein n=1 Tax=Portibacter sp. 10MBP4-2-1 TaxID=2898660 RepID=UPI001F48D85E)

HSP 1 Score: 87.4 bits (215), Expect = 3.550e-16
Identity = 69/224 (30.80%), Postives = 95/224 (42.41%), Query Frame = 1
Query:    1 SCVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXX-----SWTAD-GSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITS-----LNSGVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXXSW----TADGSTYLVYVTGY 627
            +C TS+   G VWY I    G  + AS C+ A+FDTK+ +                             SW  + G  Y IYV G+   TGDF L +    P   ND+C NAI +     V   T   +  D +  + C        L+ GVWYTI    G    +STCG ADYD+K+ ++   C    C  G +         S     T +G TY +YV+G+
Sbjct:  592 TCGTSISAPG-VWYNIV-GTGEFITASVCNLANFDTKIIIIQADDCNSDLFCVAGNDDGPECLGFTSEVSWLGEQGVNYYIYVNGFDGETGDFTLLINCNAPAE-NDLCENAISLDCVDSVEGSTNFATDRDQVGDSDCSDDVFSDLLSPGVWYTI-EGLGKPITLSTCGTADYDSKIDVYTGECGNLVCYAGNEDGPGCPDFTSELTFDTEEGVTYHIYVSGF 811          
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Match: UPI002006C39B (CUB domain-containing protein n=1 Tax=Subsaxibacter sp. CAU 1640 TaxID=2933271 RepID=UPI002006C39B)

HSP 1 Score: 86.7 bits (213), Expect = 6.510e-16
Identity = 66/230 (28.70%), Postives = 115/230 (50.00%), Query Frame = 1
Query:   13 SLDTTGGVWYTITPANGA-EVVASTCDGADFDTKLAVFAXXXXXXXXXXXXXXXXXXXXXXS----WTADGSTYLIYVTGYSDYTGDFDLSVTAAVPVPGNDVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCIT-SLNS--GVWYTITPAEGSETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDXXXXXXXXX---SWTADGSTYLVYVTGYSTNTGEFVLTANVT 669
            SL++  GVW+T T   G+ +++  +  G++FDT+LA+ +                      S      A G+TY IY+T  +  +G+++L++T   P P ND+C+NA  +   G  + G+T  +T     ++TC + SLN+  GVW+    + G++ I     G+++DT L +++  C   SC+   D            +     +TY  YVTGYST++G + +  N T
Sbjct:  591 SLNSGPGVWHTYTNGTGSSKLIRVSTVGSNFDTRLAILSGSCGALSCVTANDNGPTGVTPQSELTFTAAAGTTYRIYITAATGVSGNYNLTLTEIFP-PANDLCANATTMTL-GQTLTGSTSSATLTGAPSSTCSSNSLNTAPGVWFRYV-SSGAQQISVDTEGSNFDTILGVYSGSCGTLSCIASNDDTLTNSQSRVVFTTNTSPTTYYFYVTGYSTDSGNYTINLNNT 817          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76435.18018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4WZH0_9BACT3.910e-3238.12T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7Y2YCW7_9GAMM1.500e-2836.05Uncharacterized protein n=1 Tax=Xanthomonadales ba... [more]
A0A3M1TYJ3_9BACT2.070e-2637.39T9SS C-terminal target domain-containing protein n... [more]
A0A356FES8_9BACT2.820e-2633.48Dockerin domain-containing protein (Fragment) n=1 ... [more]
UPI002004AC5B2.820e-2434.98T9SS type A sorting domain-containing protein n=1 ... [more]
A0A6N6KCM4_9BACT9.090e-2333.76HYR domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A7Y2VJ45_9GAMM1.380e-2234.48Uncharacterized protein n=1 Tax=Xanthomonadales ba... [more]
A0A848T2J5_9BACT4.450e-1733.33T9SS type A sorting domain-containing protein n=1 ... [more]
UPI001F48D85E3.550e-1630.80T9SS type A sorting domain-containing protein n=1 ... [more]
UPI002006C39B6.510e-1628.70CUB domain-containing protein n=1 Tax=Subsaxibacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76435contigM-pyrifera_M_contig76435:17..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.1
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog1122179.KB890451_gene4532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain, Protein
EggNOG OGsCOG3210@1,COG3210@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.7311006-CDS-M-pyrifera_M_contig76435:16..2991622816663.7311006-CDS-M-pyrifera_M_contig76435:16..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76435 17..299 +
1692278106.0757878-CDS-M-pyrifera_M_contig76435:16..2991692278106.0757878-CDS-M-pyrifera_M_contig76435:16..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76435 17..299 +
1622816663.743862-CDS-M-pyrifera_M_contig76435:354..7551622816663.743862-CDS-M-pyrifera_M_contig76435:354..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76435 355..755 +
1692278106.0872142-CDS-M-pyrifera_M_contig76435:354..7551692278106.0872142-CDS-M-pyrifera_M_contig76435:354..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76435 355..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76435.18018.1prot_M-pyrifera_M_contig76435.18018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76435 17..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76435.18018.1

>prot_M-pyrifera_M_contig76435.18018.1 ID=prot_M-pyrifera_M_contig76435.18018.1|Name=mRNA_M-pyrifera_M_contig76435.18018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
SCVTSLDTTGGVWYTITPANGAEVVASTCDGADFDTKLAVFADGCDVQTC
VTGVDDSCDRQSTVSWTADGSTYLIYVTGYSDYTGDFDLSVTAAVPVPGN
DVCSNAIEIAATGGVVAGTTVGSTTDSLLTTTCITSLNSGVWYTITPAEG
SETIVSTCGGADYDTKLAIFADGCDVQSCVTGVDDSCDLQSTVSWTADGS
TYLVYVTGYSTNTGEFVLTANVTGKQAV
back to top

mRNA from alignment at M-pyrifera_M_contig76435:17..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76435.18018.1 ID=mRNA_M-pyrifera_M_contig76435.18018.1|Name=mRNA_M-pyrifera_M_contig76435.18018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=739bp|location=Sequence derived from alignment at M-pyrifera_M_contig76435:17..755+ (Macrocystis pyrifera P11B4 male)
TCCTGCGTCACCAGCCTCGACACAACTGGTGGCGTGTGGTACACCATCAC ACCCGCCAACGGCGCTGAGGTCGTCGCCTCTACTTGCGATGGTGCCGATT TCGACACGAAGCTGGCCGTCTTCGCGGACGGCTGCGACGTGCAGACCTGC GTGACAGGCGTGGACGACTCGTGTGACCGCCAGTCGACGGTTTCTTGGAC TGCTGACGGCAGCACGTACCTGATCTACGTCACTGGATACAGCGACTACA CCGGAGACTTTGACCTTTCAGTCACCGCCGCGGGTACGTATCACAGTAGA GCCGCATAAAGTACGCCAATGCTGACTATTGCATATAGTCCCGGTACCCG GGAACGATGTTTGCAGCAATGCCATCGAGATCGCCGCCACAGGCGGTGTT GTGGCCGGCACTACTGTGGGCTCCACCACGGATTCGCTCCTCACCACCAC CTGTATCACCAGCCTCAACTCGGGCGTGTGGTACACCATCACGCCCGCCG AAGGCTCTGAGACCATCGTCTCCACCTGCGGGGGTGCCGATTACGACACG AAGCTGGCCATCTTCGCCGATGGCTGTGACGTGCAAAGCTGTGTGACCGG CGTGGACGACTCGTGCGACCTCCAGTCGACGGTCTCCTGGACTGCCGACG GCAGCACGTACCTGGTCTATGTCACCGGCTACAGCACCAACACCGGCGAG TTTGTGCTCACCGCCAATGTCACAGGTAAGCAAGCGGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig76435:17..755+

>mRNA_M-pyrifera_M_contig76435.18018.1 ID=mRNA_M-pyrifera_M_contig76435.18018.1|Name=mRNA_M-pyrifera_M_contig76435.18018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig76435:17..755+ (Macrocystis pyrifera P11B4 male)
TCCTGCGTCACCAGCCTCGACACAACTGGTGGCGTGTGGTACACCATCAC
ACCCGCCAACGGCGCTGAGGTCGTCGCCTCTACTTGCGATGGTGCCGATT
TCGACACGAAGCTGGCCGTCTTCGCGGACGGCTGCGACGTGCAGACCTGC
GTGACAGGCGTGGACGACTCGTGTGACCGCCAGTCGACGGTTTCTTGGAC
TGCTGACGGCAGCACGTACCTGATCTACGTCACTGGATACAGCGACTACA
CCGGAGACTTTGACCTTTCAGTCACCGCCGCGGTCCTGCGTCACCAGCCT
CGACACAACTGGTGGCGTGTGGTACACCATCACACCCGCCAACGGCGCTG
AGGTCGTCGCCTCTACTTGCGATGGTGCCGATTTCGACACGAAGCTGGCC
GTCTTCGCGGACGGCTGCGACGTGCAGACCTGCGTGACAGGCGTGGACGA
CTCGTGTGACCGCCAGTCGACGGTTTCTTGGACTGCTGACGGCAGCACGT
ACCTGATCTACGTCACTGGATACAGCGACTACACCGGAGACTTTGACCTT
TCAGTCACCGCCGCGGTCCCGGTACCCGGGAACGATGTTTGCAGCAATGC
CATCGAGATCGCCGCCACAGGCGGTGTTGTGGCCGGCACTACTGTGGGCT
CCACCACGGATTCGCTCCTCACCACCACCTGTATCACCAGCCTCAACTCG
GGCGTGTGGTACACCATCACGCCCGCCGAAGGCTCTGAGACCATCGTCTC
CACCTGCGGGGGTGCCGATTACGACACGAAGCTGGCCATCTTCGCCGATG
GCTGTGACGTGCAAAGCTGTGTGACCGGCGTGGACGACTCGTGCGACCTC
CAGTCGACGGTCTCCTGGACTGCCGACGGCAGCACGTACCTGGTCTATGT
CACCGGCTACAGCACCAACACCGGCGAGTTTGTGCTCACCGCCAATGTCA
CAGGTAAGCAAGCGGTATCCCGGTACCCGGGAACGATGTTTGCAGCAATG
CCATCGAGATCGCCGCCACAGGCGGTGTTGTGGCCGGCACTACTGTGGGC
TCCACCACGGATTCGCTCCTCACCACCACCTGTATCACCAGCCTCAACTC
GGGCGTGTGGTACACCATCACGCCCGCCGAAGGCTCTGAGACCATCGTCT
CCACCTGCGGGGGTGCCGATTACGACACGAAGCTGGCCATCTTCGCCGAT
GGCTGTGACGTGCAAAGCTGTGTGACCGGCGTGGACGACTCGTGCGACCT
CCAGTCGACGGTCTCCTGGACTGCCGACGGCAGCACGTACCTGGTCTATG
TCACCGGCTACAGCACCAACACCGGCGAGTTTGTGCTCACCGCCAATGTC
ACAGGTAAGCAAGCGGTA
back to top