mRNA_M-pyrifera_M_contig76405.18014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76405.18014.1
Unique NamemRNA_M-pyrifera_M_contig76405.18014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: S4PS37_9NEOP (Alpha-tubulin N-acetyltransferase n=3 Tax=Pararge aegeria TaxID=116150 RepID=S4PS37_9NEOP)

HSP 1 Score: 62.8 bits (151), Expect = 2.510e-9
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  112 AQELGRVLTSAEILRSHPEQHLIV----AVRGD--EMLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKELLE 348
            AQ L RV+T+AE LR+ P+  L +    + +G   E++G+ K G KHLFL     KV + +  C+LDFFVL   +R G GK L +
Sbjct:   55 AQNLNRVITTAEKLRNSPDLILYILKDASAKGGKGELIGLLKVGWKHLFLFDEQDKVRQVEPLCVLDFFVLPDYQRHGYGKVLFD 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: UPI0018D59B70 (alpha-tubulin N-acetyltransferase 1 isoform X3 n=1 Tax=Motacilla alba alba TaxID=1094192 RepID=UPI0018D59B70)

HSP 1 Score: 57.4 bits (137), Expect = 1.970e-7
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            QAQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF++ ES++RRGLG+EL
Sbjct:   10 QAQGLSTPVTSAARMESN--RHVMYILRDTRSPRGAVLGFLKVGYKKLFLLERDGSHVEVEPLCVLDFYIHESQQRRGLGREL 90
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BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: A0A0L7KU63_9NEOP (Alpha-tubulin N-acetyltransferase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KU63_9NEOP)

HSP 1 Score: 56.6 bits (135), Expect = 3.440e-7
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:  115 QELGRVLTSAEILRSHPEQHLIVAVRG-------DEMLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKELLE 348
            Q L +V+T+A+ LR+  + H +  ++         E+LG+ K G KHLFL      V E +  C+LDFFVL S +R GLG+ L +
Sbjct:   56 QGLSKVITTADKLRT-ADSHTLYLIKDASARDGKGEVLGMLKVGRKHLFLFDEQQSVREVEPLCVLDFFVLRSCQRHGLGRALFD 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: UPI00195F4488 (uncharacterized protein LOC120503966 n=1 Tax=Passer montanus TaxID=9160 RepID=UPI00195F4488)

HSP 1 Score: 57.4 bits (137), Expect = 3.750e-7
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  100 IRLQAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            +R  AQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF++ ES++RRGLG+EL
Sbjct:  236 LRQTAQGLSTPVTSAARMESN--RHVLYILRDTRSPRGAVLGFLKVGYKKLFLLERDGSHVEVEPLCVLDFYIHESQQRRGLGREL 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: X6LY28_RETFI (Alpha-tubulin N-acetyltransferase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LY28_RETFI)

HSP 1 Score: 56.2 bits (134), Expect = 6.030e-7
Identity = 28/83 (33.73%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDEMLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKELLEWGL 357
            QAQ+L + +T+A IL+    +  ++++  +++ GI K GTK LF+     ++      C+LDF+V+ S +R+G+G+ L E+ L
Sbjct:   59 QAQKLDKPVTTANILKHTNHKLYLISLGPNKINGILKIGTKKLFVYNEKNELTPITPTCVLDFYVVSSSQRQGVGRLLFEYML 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: UPI0011AECA73 (alpha-tubulin N-acetyltransferase 1 isoform X1 n=2 Tax=Taeniopygia guttata TaxID=59729 RepID=UPI0011AECA73)

HSP 1 Score: 55.8 bits (133), Expect = 9.630e-7
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            +AQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF+V ES++RRGLG+EL
Sbjct:   57 KAQGLSTPVTSAARMESN--RHVLYMLRDTRPPRGAVLGFLKVGYKKLFLLDQDGSHVEVEPLCVLDFYVHESQQRRGLGREL 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: A0A674HMY0_TAEGU (Alpha-tubulin N-acetyltransferase 1 n=1 Tax=Taeniopygia guttata TaxID=59729 RepID=A0A674HMY0_TAEGU)

HSP 1 Score: 55.8 bits (133), Expect = 1.220e-6
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            +AQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF+V ES++RRGLG+EL
Sbjct:   57 KAQGLSTPVTSAARMESN--RHVLYMLRDTRPPRGAVLGFLKVGYKKLFLLDQDGSHVEVEPLCVLDFYVHESQQRRGLGREL 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: A0A674HTF6_TAEGU (Alpha-tubulin N-acetyltransferase 1 n=1 Tax=Taeniopygia guttata TaxID=59729 RepID=A0A674HTF6_TAEGU)

HSP 1 Score: 55.8 bits (133), Expect = 1.260e-6
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            +AQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF+V ES++RRGLG+EL
Sbjct:   57 KAQGLSTPVTSAARMESN--RHVLYMLRDTRPPRGAVLGFLKVGYKKLFLLDQDGSHVEVEPLCVLDFYVHESQQRRGLGREL 137
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: UPI0006C98460 (alpha-tubulin N-acetyltransferase-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C98460)

HSP 1 Score: 55.1 bits (131), Expect = 1.850e-6
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQ-HLIVAVRGDE----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKELLEWGL 357
            +AQ L RV+TSA  LR      +L+V  +G+     +LG+ K G K LF+   +G  ++    C+LDF++ ES++R+GLGK L E+ L
Sbjct:   54 KAQGLNRVITSAIKLRDTDHIIYLMVDNQGNNGLGSILGLLKTGAKTLFMFDENGYHYQVKPRCILDFYIHESQQRKGLGKGLYEFML 141
[Close]
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Match: UPI0006B6FC0A (alpha-tubulin N-acetyltransferase 1 n=1 Tax=Pseudopodoces humilis TaxID=181119 RepID=UPI0006B6FC0A)

HSP 1 Score: 54.3 bits (129), Expect = 3.360e-6
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:  109 QAQELGRVLTSAEILRSHPEQHLIVAVRGDE-----MLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFFVLESERRRGLGKEL 342
            +AQ L   +TSA  + S+  +H++  +R        +LG  K G K LFL   DG   E +  C+LDF++ ES++RRGLG EL
Sbjct:   53 KAQGLSTPVTSAARMESN--RHVLYILRDTRSPKGAVLGFLKVGYKKLFLLDRDGSHVEVEPLCVLDFYIHESQQRRGLGMEL 133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76405.18014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
S4PS37_9NEOP2.510e-942.35Alpha-tubulin N-acetyltransferase n=3 Tax=Pararge ... [more]
UPI0018D59B701.970e-740.96alpha-tubulin N-acetyltransferase 1 isoform X3 n=1... [more]
A0A0L7KU63_9NEOP3.440e-738.82Alpha-tubulin N-acetyltransferase (Fragment) n=1 T... [more]
UPI00195F44883.750e-739.53uncharacterized protein LOC120503966 n=1 Tax=Passe... [more]
X6LY28_RETFI6.030e-733.73Alpha-tubulin N-acetyltransferase n=1 Tax=Reticulo... [more]
UPI0011AECA739.630e-740.96alpha-tubulin N-acetyltransferase 1 isoform X1 n=2... [more]
A0A674HMY0_TAEGU1.220e-640.96Alpha-tubulin N-acetyltransferase 1 n=1 Tax=Taenio... [more]
A0A674HTF6_TAEGU1.260e-640.96Alpha-tubulin N-acetyltransferase 1 n=1 Tax=Taenio... [more]
UPI0006C984601.850e-639.77alpha-tubulin N-acetyltransferase-like n=1 Tax=Cop... [more]
UPI0006B6FC0A3.360e-639.76alpha-tubulin N-acetyltransferase 1 n=1 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76405contigM-pyrifera_M_contig76405:526..966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue7.5e-08
Seed eggNOG ortholog5888.CAK66204
KEGG koko:K19573
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0019799,GO:0032886,GO:0033043,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0050789,GO:0050794,GO:0051128,GO:0051493,GO:0061733,GO:0065007,GO:0070507,GO:0071704,GO:0071929,GO:1901564
EggNOG free text desc.this activity may be independent of acetylation activity. Acetylates alpha-tubulin with a slow enzymatic rate, due to a catalytic site that is not optimized for acetyl transfer. Enters the microtubule through each end and diffuses quickly throughout the lumen of microtubules. Acetylates only long old microtubules because of its slow acetylation rate since it does not have time to act on dynamically unstable microtubules before the enzyme is released
EggNOG OGs3ZDW0@5878,KOG4601@1,KOG4601@2759
Ec32 ortholog descriptionAcyl-CoA N-acyltransferase
Ec32 orthologEc-12_006430.1
EC2.3.1.108
COG Functional cat.H
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.4919848-CDS-M-pyrifera_M_contig76405:525..7711622816663.4919848-CDS-M-pyrifera_M_contig76405:525..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76405 526..771 +
1692278105.8732822-CDS-M-pyrifera_M_contig76405:525..7711692278105.8732822-CDS-M-pyrifera_M_contig76405:525..771Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76405 526..771 +
1622816663.5063744-CDS-M-pyrifera_M_contig76405:852..9661622816663.5063744-CDS-M-pyrifera_M_contig76405:852..966Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76405 853..966 +
1692278105.891304-CDS-M-pyrifera_M_contig76405:852..9661692278105.891304-CDS-M-pyrifera_M_contig76405:852..966Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76405 853..966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76405.18014.1prot_M-pyrifera_M_contig76405.18014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76405 526..966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76405.18014.1

>prot_M-pyrifera_M_contig76405.18014.1 ID=prot_M-pyrifera_M_contig76405.18014.1|Name=mRNA_M-pyrifera_M_contig76405.18014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
VERAIDTLGELSREVCGGDEGGMGFWWSVWMSGIRLQAQELGRVLTSAEI
LRSHPEQHLIVAVRGDEMLGIAKFGTKHLFLRRTDGKVWEKDVYCLLDFF
VLESERRRGLGKELLEWGLR
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mRNA from alignment at M-pyrifera_M_contig76405:526..966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76405.18014.1 ID=mRNA_M-pyrifera_M_contig76405.18014.1|Name=mRNA_M-pyrifera_M_contig76405.18014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig76405:526..966+ (Macrocystis pyrifera P11B4 male)
GTTGAGAGAGCAATTGATACGTTAGGTGAGTTGTCACGTGAAGTATGCGG
GGGTGATGAGGGAGGGATGGGGTTTTGGTGGAGTGTGTGGATGAGTGGTA
TTCGTTTGCAGGCACAAGAGCTAGGTAGGGTATTAACGTCGGCTGAAATC
TTACGATCACACCCAGAACAGCATCTAATAGTTGCTGTACGAGGGGATGA
AATGCTTGGGATCGCCAAATTTGGCACCAAGCATTTGTTTTTGCGTGTAA
GTTGGAGAAATGATAGTGGATGTGAGGTAGAGTAGGGAAGTGGGTGGGAG
GAGGTGATTGCGTTGCATGTTTTGCAGAGAACGGACGGAAAGGTTTGGGA
AAAAGACGTATATTGCTTGTTGGACTTTTTCGTGCTGGAATCCGAGCGTA
GGAGAGGATTAGGGAAGGAATTGTTGGAGTGGGGGTTAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76405:526..966+

>mRNA_M-pyrifera_M_contig76405.18014.1 ID=mRNA_M-pyrifera_M_contig76405.18014.1|Name=mRNA_M-pyrifera_M_contig76405.18014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig76405:526..966+ (Macrocystis pyrifera P11B4 male)
GTTGAGAGAGCAATTGATACGTTAGGTGAGTTGTCACGTGAAGTATGCGG
GGGTGATGAGGGAGGGATGGGGTTTTGGTGGAGTGTGTGGATGAGTGGTA
TTCGTTTGCAGGCACAAGAGCTAGGTAGGGTATTAACGTCGGCTGAAATC
TTACGATCACACCCAGAACAGCATCTAATAGTTGCTGTACGAGGGGATGA
AATGCTTGGGATCGCCAAATTTGGCACCAAGCATTTGTTTTTGCGTGTTG
AGAGAGCAATTGATACGTTAGGTGAGTTGTCACGTGAAGTATGCGGGGGT
GATGAGGGAGGGATGGGGTTTTGGTGGAGTGTGTGGATGAGTGGTATTCG
TTTGCAGGCACAAGAGCTAGGTAGGGTATTAACGTCGGCTGAAATCTTAC
GATCACACCCAGAACAGCATCTAATAGTTGCTGTACGAGGGGATGAAATG
CTTGGGATCGCCAAATTTGGCACCAAGCATTTGTTTTTGCGTAGAACGGA
CGGAAAGGTTTGGGAAAAAGACGTATATTGCTTGTTGGACTTTTTCGTGC
TGGAATCCGAGCGTAGGAGAGGATTAGGGAAGGAATTGTTGGAGTGGGGG
TTAAGGAGAACGGACGGAAAGGTTTGGGAAAAAGACGTATATTGCTTGTT
GGACTTTTTCGTGCTGGAATCCGAGCGTAGGAGAGGATTAGGGAAGGAAT
TGTTGGAGTGGGGGTTAAGG
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